RNA id: XM_043238230.1


Basic Information

Item Value
RNA id XM_043238230.1
length 2670
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC122344685
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6992222 ~ 6999388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACACagacagaaaAGGTTACAGGAACAGACTTGTATAGCGTAACAAGGGTTTTTGGCTTGCTGCGCCAAGTACAGACTCTTCTGAATGTGCTTTTTGCTAGCACCCTGCATGTTTTGTGTGCAGCGCTTTCAGTTGTGCGACTGTGCATGcaagcagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtgtgcaTTCCATTATTATGCTGTTGATTATTAGGCCTCCTTCCTTCCACATGGTCCCCTGGGGTACGTGTGAATAAATGCATTCCGTGTGTTTCTCTGCGCTCTTTCATATTTGTCTTCCGCCCGCGTAGAGGATATTTGCATGAAATGTTCGCGTCTGTGTGAGGGCTGTTCTCTCACGTCAGTACATCGCCGTCTTGTTTCGTCTGATTTCTTGGtgcatataaaagtatattagaGCGTTTTGTGCGCCGCGCTCGTGTTTGATTTAGACATCAATGGCTGGCGCTGCCTGCATAGCGTCATACTcagaattcatattttcatCCCTCTCATATGCTCTCTGCGGCAGGCATATCACTGCACTTTAATTGCCTTTGTGTAAAACACAGACtcgacagcacacacacacacacgcacgcgcgcacgCAGCGAATTCCGCATTTGCTTATTATTACACGTGAGGCGCGTGCATGTTGCTAGCCGCTGCGTTCCAGCGCCGTTTTTAATGAAACGCGCTCGGCGTCCGTCACCGTTCCGTTAAGTCAGGCGTGTTGGCTGGAGATCGGCATCGCCGTAAACGTCAATCATTTCATTCACAATGGGACTGAAGATCGGCGTACCAGCGTCTCCTGCCTCCCCAGCAGCCCCCGTGCTGGATCGTACAGAGCTAGTGGGACATTGTTAAGTGATTctttatcaaatattaaaatggaagtGAAAGCAGCTGCTCGCGTTAGAGGGGACTGAAGATTGAAGGCAGATTGCCTGGTGAGACGTATAGCCAAGATGATGATGAGTTGGACGTGTTCGGAGGAGAGGCCAGAAAGTTCATGCCTAtctcaggccatccaaaacGGAGTGTCTGAGGTTATGGAGGAGGAAAGTAACTTAAAGAAACGAAAAAGCGATCAACAAGGCAACCAGGTCTCTGAGACTGGTCAGGAGGTGGTGGAGAAGGTCAAAAAGCGACGGGGTCGCCCTCCTGCCGAGAAACTGCCGCCCaaccctcccaagctcacaaaACAGATGAACACCATCGTAGACATGGTCATCAACTACAAGGACACGTTGGGGCGACAGATCAGTAAAGGTTTCGTTCAGCTGCCCTCAAGAAAAGAGGTGCCAGAGTACTATGAGCTCATCCGCAAGCCAGTCGACTTCAGGAGGATCAGGGAGAGAGTACGTAATCACAAATACAGGTGCATTGCTGACCTGGAAAAGGATATCATGCAGATGTGCCACAATGCTCAGACGTTTAATTTGGAAGGATCTCAGATCTTTGAGGACTCCATTGTTTTGAAGTCTGTTTTTGAGAGCGCGAGACAGCGAATAGTGGAGCTCAGCGCCGAAGACAATGATGCCGTTGGAAGCAGTGAAGCAGACGGTGGTCGTCTTTTAAATCTAGAGCCTCCCGTTTCGAAATCAACAAATCCCAAGCTGGacggaaaaaaaggaaaaaataaatccgATCCTAGTAATTCCAGTTCAAAGGAAGTCACAAACAGTGATGAAGACCTTGGCAAAGAATGTGAGAATAACACAAGAGGACTATTAAATTAGACCCCAAATGACAGTCTGGTATAAAAATCATTGTATGCCATTTCAAGAACATTGTATGGCCATTTCAGTCTGGTTTTCTTGATGTTTCGGTCAAGGAATTGCTCAGAATGTGATCTCTCATTATTATGGTTGCTTAAAACTCCTTTGTAAAACCTTTGTATTCTAAAGATAACATTGTTAATGCAGTGCTTCTGCAGTGATACATCTGAAATTGGCTctgttttcatgtatttataaaatgtaaataagtcaTAAACCcaaaatagatataaaatatcatggtaaaaaaaaaaaaaaaaaaaaggtctgtaaGTTCGGACTGCCTGAAAACGttcactctttttttccccaaggaTGGAAAAACGGTGATATGACATATTATGATATTGTATGATCATTTAAACGGATGCATTCAATCTTTCAAGATGGTATAAGCTGTGCTAAATTTGCAAGCTATTATGTCTCTGTTTCAGAGaatttttaatctgtggtttTTGTGACTATGAGCACTTTGTCATCTCCTCTTTGTACGTTTCCCTTTCCTTCATTAACTgttaacatcaaaaaaaaaaaaaaaaaaaacaagaaaaaaggaaaatttttattcagcagCTCTTTATCTTTCTTTAGTTATCACAGGATCTTAACTGTCAGTACATAGAGAAGTCGGGGCATGATGGCAATGTATTCTTTGGTGACAGATCAGATACTGCCCTCAAAGAGAGGCACCTATTGATGATGCTGTCACGTTTGTGTGTTCAGTTTATGATGGATGGGAGAAGTGGTGTGTTTGTGGAGAGATGGAATTAAAGTGTATGGGGTTTATATGATGTGAAAGGGAAAGTTTTAAGTCACcgtattacaaaaataaaaatttttatgaaATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49702 lncRNA upstream 10643 6980717 ~ 6981993 (+) False kank1b
TU49676 lncRNA upstream 61851 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 70997 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 295994 6617276 ~ 6696642 (+) False dab2ipb
TU49607 lncRNA upstream 498106 6491552 ~ 6494530 (+) False G33665
TU49863 lncRNA downstream 134906 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 135519 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 145672 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 147647 7147035 ~ 7147616 (+) True G33853
TU49878 lncRNA downstream 167220 7166608 ~ 7168142 (+) True G33857
XM_043238333.1 mRNA upstream 3864 6978555 ~ 6988772 (+) True kank1b
XM_043238334.1 mRNA upstream 3864 6980655 ~ 6988772 (+) False kank1b
XM_043239641.1 mRNA upstream 14961 6965149 ~ 6977675 (+) True prkaa1
XM_043239642.1 mRNA upstream 28139 6963937 ~ 6964497 (+) True ifitm1
XM_043239743.1 mRNA upstream 30247 6957273 ~ 6962389 (+) False kyat1
XM_043240926.1 mRNA downstream 53582 7052970 ~ 7059426 (+) True glipr2
XM_043240928.1 mRNA downstream 53582 7052970 ~ 7059426 (+) False glipr2
XM_043240930.1 mRNA downstream 53583 7052971 ~ 7059426 (+) False glipr2
XM_043240929.1 mRNA downstream 53585 7052973 ~ 7059426 (+) False glipr2
XM_043240908.1 mRNA downstream 63591 7062979 ~ 7065087 (+) True zgc:55461
TU49701 other upstream 10643 6978548 ~ 6981993 (+) False kank1b
XR_006251122.1 other upstream 40907 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 41270 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 41878 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 42355 6950211 ~ 6950281 (+) True LOC122346219
XR_006251030.1 other downstream 287202 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 339080 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 339080 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 374518 7373906 ~ 7449497 (+) False LOC122345182
TU49933 other downstream 420752 7420140 ~ 7440775 (+) False G33891

Expression Profile