RNA id: XM_043238250.1


Basic Information

Item Value
RNA id XM_043238250.1
length 1148
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122344704
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15500502 ~ 15504606 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGCGATTTTGCTTCTCTGCGTGAGCTTATACTTCTTGAGGATTTCAAGAAGTGTTTACCTGAACGCATCGTATTATATCTAAATGAGCAAAAGGTGACGACGTTATCgattgctgctgttttggcCGATGAATTTGCGCTAACGCATAAAAACGTGTTTTCTGTTGTGCGCGGTGACAGGCCTGGTGTTGTGGCTGCATCTTTGAATACTGTACCGGCCAAGATCAATGGGGAACGGTTTAGAGAAAAACGTGAGTGTTTTTATTGCCATAAAGTAGGTCATGTCATTGCTGACTGTATGGtattaaagagaaaatcaaATCCGGTTAAAACGCAGTCAGTAGGTCTTATCAAAACTTCTTTAGTACAGGCTGATTCAGGGTATGAACCATTTTTGTTAGATGGTTTTGTGTCTTTCAGTGGTCAACTTGAGGACCGAGTTGCAGTGAGAGTGTTGAGGGACACTGGTGCTGCTCGCTCGTTGATGCGCGGTGATGTTTTGCCTTTCTCCAAGGAGTCTGGTTTGGATTCCAGCATTTTAGTGCAAGGTATTAGTATGGAAGTAATAAAAGTCCCATTACATCGAGTACATTTGCAATCTGAGCTTGTAACTGGCTTTGTTGACGTGGGGGTACGACCTACCTTACCAGTTCCTGGTATTGAGTTCATTCTGGGTAATGATTTAGCAGGGGGTCGTGTGTTGCCAGTTTTAGAGGTTTTGGATAATCCTGTGATTACTCCTACTTCAGCAGAATTGACTCAGAGATTTCCAGAAGTTTTCCCAGCGTGTGTCCTGACTCGGTCTCAGACGAAGAGGATGGGAACGGAGTTTACACTAGATGACACCTTCATGTGCACTGATCATCCAGTTCAAGTTGATGTGGAGTCTGTCAGTGTCAAAGAGCATCCATGCCAGGAGTCAGAATCAGAACAGAGGTGGATGCTAGTGCCGTTGGAGCTGGTGCTGTGCTCTTACAGGAAGATAAAGAAGgTTTCTTTATTGGTTCGCCTGACCATCTGGGAGGATCTGGATGTCCAATCAGGAGACGCGATGCAGAATTTAAATGGAATTGGTGTGCATGTTTCGGGGGCGGTGGAGTTGTGGCTAGCTTCACCGCACCTCATTTGTGCTGTGGTTTTCTTTTGA

Function

GO:

id name namespace
GO:0010942 positive regulation of cell death biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043068 positive regulation of programmed cell death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54300 lncRNA upstream 5552 15494658 ~ 15494950 (+) True G36847
TU54279 lncRNA upstream 23470 15454480 ~ 15477032 (+) False G36830
TU54273 lncRNA upstream 44807 15454480 ~ 15455695 (+) True G36830
TU54221 lncRNA upstream 157638 15327099 ~ 15342864 (+) True G36793
TU54177 lncRNA upstream 200146 15295704 ~ 15300356 (+) True G36765
TU54308 lncRNA downstream 568 15505174 ~ 15505753 (+) True G36852
TU54425 lncRNA downstream 73512 15578118 ~ 15583662 (+) True G36926
TU54414 lncRNA downstream 90842 15595448 ~ 15600161 (+) True G36918
TU54436 lncRNA downstream 117219 15621825 ~ 15623293 (+) True G36937
TU54451 lncRNA downstream 138689 15643295 ~ 15647107 (+) True G36948
XM_043239299.1 mRNA upstream 29085 15463434 ~ 15471417 (+) True LOC122345300
XM_043238421.1 mRNA upstream 37547 15457352 ~ 15462955 (+) False fancg
XM_043238420.1 mRNA upstream 37547 15457538 ~ 15462955 (+) True fancg
XM_043238423.1 mRNA upstream 37547 15457538 ~ 15462955 (+) False fancg
XM_043238422.1 mRNA upstream 38082 15457538 ~ 15462420 (+) False fancg
XM_043239932.1 mRNA downstream 51316 15555922 ~ 15563758 (+) True cfap251
XM_043239937.1 mRNA downstream 59540 15564146 ~ 15568246 (+) True bcl7a
XM_043240510.1 mRNA downstream 180197 15684803 ~ 15705172 (+) True pigl
XM_043240509.1 mRNA downstream 205373 15709979 ~ 15712715 (+) True ubb
XM_043240508.1 mRNA downstream 213260 15717866 ~ 15726181 (+) True p2rx5
TU54012 other upstream 780015 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 848591 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1195198 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1195198 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1208002 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 979396 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 979396 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 982014 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1860263 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 3338213 18842819 ~ 18847674 (+) True arsk

Expression Profile