RNA id: XM_043238253.1


Basic Information

Item Value
RNA id XM_043238253.1
length 3075
RNA type mRNA
GC content 0.46
exon number 11
gene id abcb9
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9324220 ~ 9329844 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTCTTTTCCCTTCCTGTCACTGCAGCGAGCCGGTAAAGAAGAGGCGATGGATGACTCCTGGAAATTATGGGGCTAAGATAAGTTTTGTAGTCGTGCCGCGAATATTGATTTACGAAGGAAATACGAAGCTGATTCTTAGACGGAAAATGCATTCTGTACTGCCCCACTGAACAAGTCTGTTATAGAGGGTTAAGCCGCGCAGGCCAGCCAACCAACTTGACAGACGCAGTGCATTCACGTAGACTTTGTTTCAGGCGCGCACTTTCTATTACTGCTCCGTACATGTCAGTCCGGTCTGCTGTGTCATTAACATATTTGCTCGCCCTATAGAAATCACGTCCATATAGAATTTTTGCTGCTTACGTTTAGCATTTGCATTTGAGTAGCTTCAAGGCTCTTCAGCGGGTGAATGAAAATGAGGGTTGCCGTGATTGTTAGCGGCAACCTGGTTTTCACTCTGGCGGACGTTGTGGTCACCACGGTCTTGTATGCTCATGGATCAAATCTTGATATATTTTCAGATGAATTAGAGGACTTTGACATACACCGTTCGACTGTGGACTTGTGGGGAACTGTTCTCATACGGGCCAGTCTTCTTTTCGGGGCAACCATCGGGGTGTTCTATAACAGGACTGATGGTCCACAGAGGGTTTCAAACCTGGGGACGCTGGTTTCTCTCGTATGCCTCACCAACATGACTTACGCTCTTGCCAAGTTGTTGATGCTTTCCGAGGAGGGAGCTCTGATGTATGACCCCTGGTTCCTAAGTTTGTTCTCCTGGACTTGTGCATCAGCAGTAGGCATCATGATCTCGTGGAAGCTGCTGTCACAGACTCCCAATTCTGTATCTGAAAGAGAGGATAGTGAGGAGACGGAGAGGCTGGTGGACGGGACAGAGGCTGAGGATGAGTCCAGGAAGAAGAGTAGAAAGGCAAGAAAAGAGCATCCCCGTTCAGGGGCCACAATCAGCCGCCTCTTGTCGTACTGTAAGAAGGACTCTGGTTTACTGGCcattgcttttttctttcttctcctctctgCTGTGTGTGAAGCTTTCATACCTTATTACACGGGGCGAGCAATAGATGGCATAGTTATCCAGAAAAGCATGGATCATTTTGCCAAACCACTGATTACTCTCAGTATTTTGGCTTTGGTCAGctcCATAGCCACTGGGTTTCGTGGAGGTGTCTTTTCTGTCACGTTTGCCAGGTTGAACATTCGACTTAGGAACCTTCTCTTTAGATCACTAATGCATCAGGAGATTGGGTTCTTCGATGCTAATCATACAGGTGACATTACCTCTAGACTTACCTCAGACACTACTCAGGTGAGCGACCTCATCTCTCAAAATGTCAACCTGTTCCTACGCAGCTTTGTGAAAGCTGTGGGCATCTTTATATTCATGTTTGGGATGTCATGGAAGCTGTCTGTAGTCACCATCATGGGTTTCCCATACATAGCTGTGGTCTCCAAGCTGTATGGAGAGTATTACAAGAAATTAACCAAAGAAGTTCAGACAGCACTGGCTCAGGCCAATAAAGTGGCAGAGGAAACGATATCAGCCATGAGAACAGTGCGAAGTTTTGCCAATGAAGATCAGGAGGGAGACTCGTACAACAGCAAACTGCAGGAGATGTTTGTTCTTAATAAGAAACAAGCAGTTGCCTATGCCTGCTTCATGTGGTCCAGCTATATCTCTGAGCTAGCCTTGCAAGTTGCCATCCTGTATTATGGAGGCCACCTAGTGGTGACAAATCAGATGAGCGGAGGGACTCTTATTTCCTTTATCATTTATGAGCTGGAGCTCGGAGAGGCCCTGGAGagtATCTCGTCAGTGTACACAGGTTTGATGCAAGGCGTCGGAGCTGCAGAGAAAGTGTTCGAATACATCGACAGGAAACCTAAACACATCCTTGATGGCCAAGAGGCTCCGGAGACATTTGAAGGGCAGGTGGAATTCAAAAATGTGACGTTTGCATATCCAACACGGCCAGAGATGGATATATTAAAGAATGTTTCATTCAGTCTTCGCCCTGGGCAAGTAACTGCACTGGTAGGGCCCTCTGGTGGTGGAAAAAGCTCATGCGTGTGTTTGTTGGAGAATTTCTATGCCCCTCAGCAAGGCCAGGTGCTAGTGGACGGCCGACCTGTGAACAGCTACCAGCACAAATACTATCACTCTAAGgtAGCACTGGTGAGTCAGGAGCCTGTTCTATTTGCCCGCACTGTTCAGATGAATATTTCCTATGGTGTACCTGAAGCCTCCATGGAGGCAGTCATTAGAGCTGCCATTAATGCCAATGCACATGACTTCATAACAGGCCTCTCCAAAGGCTATGAAGCTgGGGTTGGAGAGAAGGGTGCTCAGCTGTCTGGTGGGCAAAAACAGAGAGTTGCCATCGCTCGGGCTCTTATCAGAAACCCTCGCATTCTCATTTTGGATGAAGCTACAAGTGCATTGGATTCAGAAAGCGAATTCATAGTTCAGCAGGCTCTGAACAACTTGATGCGAGAACACACGGTTTTAGTGATTGCCCACAGACTGAGCACAGTGGAGAGAGCAGATAACATCCTAGTGATCGACAAAGGCTGTGTGGCGGAGCAGGGGCCGCATGCTGAACTCATGGCCAGGGGAGGCCTCTACTGCAAACTGGTGCAGAGGCAGATCTTGGGGACTGACATAGATGCAGATGGTCACAACCCATCTCCAGCCCCACCATGGGAGCTGAAGGAAGGAGATAACGAGAGTGCAGAGGACTGTAGCGACACTGAGTGCGAAGCACGCTACTAAGAAAAACTTTGAAATGTGCTTCATTTGATTGTATGAAAGCCTTAACCCtagatagatatttattttgatgtatttattctAATCTGGGAATATAtcacatattttgcatgtcaAATGGTGCATTACCAGACAGGAGTACTGGGATGAGGAGTAAAGCTTTaagcaataaatatttgatatgctTGATGTACTGTACtgttatttcagaaataaatatattaaataatacagatatataaataaactttattatggaaataaaatgaattgatggactaa

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035672 oligopeptide transmembrane transport biological_process
GO:0001916 positive regulation of T cell mediated cytotoxicity biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0042825 TAP complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046978 TAP1 binding molecular_function
GO:0046979 TAP2 binding molecular_function
GO:0046980 tapasin binding molecular_function
GO:0042288 MHC class I protein binding molecular_function
GO:0042605 peptide antigen binding molecular_function
GO:0015421 ATPase-coupled oligopeptide transmembrane transporter activity molecular_function

KEGG:

id description
K05656 ABCB9, TAPL; ATP-binding cassette, subfamily B (MDR/TAP), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51096 lncRNA upstream 72430 9248259 ~ 9251790 (+) True G34688
TU51097 lncRNA upstream 76207 9246910 ~ 9248013 (+) True G34689
TU50825 lncRNA upstream 323000 8993896 ~ 9001220 (+) False G34480
TU51161 lncRNA downstream 31015 9360859 ~ 9433507 (+) True G34725
TU51186 lncRNA downstream 148761 9478605 ~ 9565907 (+) True G34747
TU51300 lncRNA downstream 435292 9765136 ~ 9765347 (+) True G34840
TU51301 lncRNA downstream 436126 9765970 ~ 9766349 (+) True G34841
TU51302 lncRNA downstream 437450 9767294 ~ 9767821 (+) True G34842
XM_043240179.1 mRNA upstream 682 9319497 ~ 9323538 (+) True zgc:113436
XM_043240186.1 mRNA upstream 7679 9295196 ~ 9316541 (+) True slc4a5a
XM_043240185.1 mRNA upstream 7679 9295196 ~ 9316541 (+) False slc4a5a
XM_043240551.1 mRNA upstream 36692 9279117 ~ 9287528 (+) True zgc:110329
XM_043240637.1 mRNA upstream 200343 9107949 ~ 9123877 (+) True zgc:162952
XM_043240257.1 mRNA downstream 489 9330333 ~ 9340363 (+) True vps37ba
XM_043240253.1 mRNA downstream 11621 9341465 ~ 9371922 (+) True ppp3cca
XM_043240255.1 mRNA downstream 11623 9341467 ~ 9371922 (+) False ppp3cca
XM_043240254.1 mRNA downstream 11623 9341467 ~ 9371922 (+) False ppp3cca
XM_043240256.1 mRNA downstream 11625 9341469 ~ 9371922 (+) False ppp3cca
TU50789 other upstream 452702 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1020069 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1313621 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1526252 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1757644 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 466546 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 734373 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1399274 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1596979 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1716636 11046480 ~ 11062314 (+) False map7d2a

Expression Profile