RNA id: XM_043238279.1


Basic Information

Item Value
RNA id XM_043238279.1
length 2502
RNA type mRNA
GC content 0.41
exon number 13
gene id chrne
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14212659 ~ 14220080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGGCAAACAGTAGTGTCCTGTGCAGGAGGCTATTCGGCTGTGTAACAAATTGGAGTATTTGCTACATGTTCAGGAATGAAATTAATCAGTTTTGGTACTGTGGACCCAAGATGATAAATTCATTAAGACGGTCTTTTGGCGACCATGGCCGACCGGTTCGGCAGGACTTGTGTAGTTGCGTTTGTACTCGTGGCCGCCGCGTTACAAGTCAGTGCAAATGAGGAGACCCAGTTAATTGCAGATAAgtttaaaaactacaataaaaatattcgTCCCGCAAGACACCCTGATGAAAAAGTCAAGGTTCAGGTCAAGTTAACTCTCACCAACCTCATCTCCTTGAATGAAAAAGAGGAGACTTTAACTACAAATGTTTGGATTGAGATTCAATGGCACGATTACCGTCTTGCATGGAATACGTCTGAGTATCACGGCATTGATCTGATCCGTGTGCCATACAACACTGTGTGGCTACCAGATATAGTTCTGGAAAACAACATTGATGGCAAGTTTGATGTGGCATATTAcgctaatgtgctgatttggaGTGATGGGTCCATGTACTGGCTTCCCCCTGCCATCTATCGCAGTACCTGTGCTATTGAGATCACCTACTTCCCTTTCGACTGGCAAAACTGCACACTAGTCTTTAGGTCTCAGACGTACAGTGCAAATGAAATTGATATGGTATTGGCAGAAGATGCAGATACAGGGAAGCCTATTGAGTGGGTGGACATTGACCCTGAGGCCTTCACAGAAAACGGGGAGTGGGCGATCAAACATCGGCCGGCTCGTAAGCTGACAAACTCACGCTACTCTCCTGATGATCTGGAGTACCAAGAGGTCTATTTCAACATCATCATCCAGAGAAAACCACTCTTCTACATAATCAACATCATCCTTCCCTGCTCTCTCATCTCCTCTCTGGTCGTTCTGGCCTATTTTCTACCTGCAAAAGCTGGAGGTCAGAAGTTGACTGTGTCCATTTCTGTACTGTTGGCTCAGACTGTGTTTCTCTTCCTGATCGCTCAGAAGATTCCAGAAACATCACTTTCTGTGCCTCTTATTGGCAAgtatttAATCTTCGTCATGTGTATGACCACACTGATCGTGACCAACTGCATCATTGTCCTTAACTTCTCCCTCCGTAGTCCCAGTACACACAACATGTCGCACACTATCAGACATATTTTCCTTGAGGTGGTCCCTCGTTTCCTTGGCATGGCCTCATTTCTGGATGAGGAGGAGCCGGGAGGTGGGACATATGAAATGAGGGAGAGGCGGCGCAGTTCGTTTGGGCTGATGCAGAGAGCTGAAGAATATGTTTTGAAACAGCCACGCAGTGAGATGATGTTtgataaacagagagagagacatggaCTCATGCGCTCAATTGTGGATGAAATTGATGTGAGCAGTACGGCAAACCTCTACAAGAGTTTGGCAAAAACAGCACCAGAAATAAAAGAGTGTGTGGATGCCTGTAACTTTATTGCTGAATCCACTAAGCAGCAAAATGACATTGgatctgagatGGAGAGTTGGGTGCTGATTGGTAAGATGATTGACAAGGTTTGTTTCTGGGCAGCCATGTTGCTGTTTTCTGTTGGCACCGTGGCCATCTTCCTTATGGGTCACTACAACCAGGCACCCGAGTACCCATTTCCTTGGGAGAACAAAAAGTACATACCTGAGTAGACAATAAAAGTCTGtccaaaagaaagaaggaaCTGGTAAAGAGACTGCTTCTGGACTCTTATttgatacagaaaataaataccAAGGCAGGTTGGAGTACAATAAGCTGCACATGATTTAATCAGGATCGACTTGTTACATGATCTTGTCTTATGTTTGACAGTAGGGACTATGGGCGTCCATGCATgcaataacataacattttgtACTCGGATCATGCTCTTTTTTACACTAGGgggatttttatatattacagaaatatacattttgcttATCTTTGTGCAAACAGTAATAATTAgtcaaataataagaaataaatgaactaatcATTTCAGCTTATTTCATACCACGTAGTGGTTCTCCAAGTTCATTGTGGTTGCATGTTGTATTGCTCCGAACCAGTTTTTCATATGTAAACGTATTCATTAACAGCGTGTCACATTCGCCAATTTTTATACAGTGATTGCACTGTAGtatttaatattagtattatagaGATGCATGTTAACTTTTACTTTGTTCTATCTTATGTATCTCtgtcataaaatgttattttaattttactcatGCAATTTTGCATTAAGCATATTATATACTATCAActctttaaatatacaaaaaacttGTGCCATCTTTGCAGTGAATAAACGGATTCTTAATTCACACTGTCTTAAAATATCCAGTGCAAACGCACAAGAAACAAGTttgatgttctttttaaatcctTATTAAGCGATgtgcttttgtgatttttctatATGCACCAAAACGGAGAATAAAATAACTGCCATAAGGtaaaaa

Function

GO:

id name namespace
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04817 CHRNE; nicotinic acetylcholine receptor epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 235589 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 235589 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 235589 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 393325 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 499239 13712680 ~ 13713420 (-) True G36297
TU53878 lncRNA upstream 56016 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 59594 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 90544 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 90882 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 91688 14311768 ~ 14320994 (-) True G36537
XM_043239938.1 mRNA downstream 342 14191695 ~ 14212317 (-) True pld2
XM_043240386.1 mRNA downstream 22187 14156523 ~ 14190472 (-) False mink1
XM_043238378.1 mRNA upstream 5910 14225990 ~ 14238346 (-) True atp1b2b
XM_043238372.1 mRNA upstream 20259 14240339 ~ 14274137 (-) True LOC122344799
XM_043238380.1 mRNA upstream 60201 14280281 ~ 14282620 (-) False znhit1
XM_043238379.1 mRNA upstream 60201 14280281 ~ 14282620 (-) False znhit1
XM_043238974.1 mRNA upstream 73669 14293749 ~ 14299976 (-) False LOC122345141
XR_006250968.1 other downstream 155954 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 155954 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 203123 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 203123 14003214 ~ 14009536 (-) False tmprss13b
TU53547 other downstream 364600 13846378 ~ 13848059 (-) False LOC122345901
TU53907 other upstream 71983 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 985871 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1075938 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 1129936 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1353031 15573111 ~ 15574817 (-) False alkbh2

Expression Profile