RNA id: XM_043238284.1


Basic Information

Item Value
RNA id XM_043238284.1
length 6591
RNA type mRNA
GC content 0.48
exon number 60
gene id LOC122344734
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17260152 ~ 17316269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTGACTCTAAACACCTGCATGTGGATGTGCTCCAAAGACTGGGATTGGTTGGGAAACGACCGTCTGGGACACGCTCCCCACCTCAAGGTGTCATCCCCTTTAAATCAGGAGTCATCCTAAACCAGAGGGCACGAATTGACGTCCCAGTGAGCTCCGTCATCCCGGCATCACTGGGCTCGACGTTCTCTCTCATCCTCAGTGTATGTTCGCATCGCATAAACAATGCTTTCCTCTTCACCGTTGTGACAAAGAGGAAAAGACTGCAGCTAGGGGTGCAGTTCATCCCTGGGCAAATCGTATTTTACTTGGGCCAAAAGAACGCTGTAAATTTTGATTATGATGTTCACAATGGTCAGTGGCACAACCTGGCTTTGGAAATCCAGGCCCAAAGGGTTACGTTATATACTTCTTGTGGGAAGACAAGTGTACAagcaaatttgcattttaaaaatgaggaAACGCTGGATCCAGAGGGCTCCTTTCGTTTGGGAAAAACGAGCCAGAACTCAGTGCAGTTTGAAGGAGCCATCTGTCAGTTTGATATTCATCCCTCTGCTAAGGCAGCTCACAATTATTGtaagtacattaaaaaacagTGCAGGGAAGCTGACACTTATCGGCCAAACCTCTCTCCTCTTTTACCGTTATTACCCCTGGATCCCAATATATCTGTTACCGTTCAGACCCCAAATGTTGTAACAGAGGTAAATGACAGACATCTTTCATTAACACAAGACAAAGTACACATTAATCATGAAACCTCACGAGTCCTAAACACCTCCGTTTTAATTACATCTCAGTCCGTACAAAGCACGTTAGCACCGATGATAGCTCACCCCACACTACAGCTCCCCCTGCAGGCCTCAGCACAAACTGCCATGGCCTCCTTTGGGAGTAGGacatcagaaatatcttcaaAGCCAACTCAGCAAAGCAGTCACAGGAGAAACCTCATAAGGGCAACTGTAAAGCCCCAGATACTAAAAGAGAACGGGATTGCTATCACCTCCACGCCAGCAGGCCAACAGAAGAACAAACTGGATATCCAGACCACTGCCACAACAAAACCTACATCTTCTAGCACATCCAGAGTTTCTGAGATGACAAATATAGCACCACAGAGACCTTTTCCAAAGGAAACCTCCATACCAAGCTCCTTTGAGACCGTCACTCCTGCAGCAACGGAtggtttccaaacttttgaccttGAACCAACCCAATACTCCCTCTTGGCTGGGCCACCAGGACAGAAAGGAGAACCAGGACCACCGGGACCTCCAGGACCTCCTGGAAAGCCAGGATTACCAGGAAAGAGAGGGCCCAGGGGTTCCCCTGGTCCGCATGGAAACCCAGGCCGCCCAGGGACCAACGGGCCCAAGGGAAAAAAGGGAGGCCCTGGGATCTCACCCGGCAAGGCACAAAATGGAATAAagGGGGACCCTGGTATATTAGGGCTACCCGGACTACCCGGTCAAGCTGGTCGGAAGgGACAGCAAGGCCATCCTGGTCCATCTGGCCAACCCGGAGATCAAGGAGAAAGAGGACTGGATGGAAGCCCGGGTGCCAAAGGTTATCCTGGCAGGCAGGGTTTGTCAGGGCCTATAGGAAATATGGGACCAAAAGGTGTACGGGGCTTCATTGGAATCCCAGGCGTCTTTGGTCTCCCGGGACCTGATGGAGAAAGAGGTTTACCTGGTGTTCCTGGGAAGAAGGGCAAGATGGGTAGGCCGGGCTTTCAAGGAGGTTTTGGGGAGCAAGGACCACCAGGACCTGATGGAAACCCAGGGGAGATGGGTGCCCCAGGTCCCGTTGGCATCCCTGGTTTTATTGGTGATATGGGTCTTGTTGGAATTGTGGGTCTTCCTGGATTAATAGGACCAAAGGGAGTACCAGGAAACCCTGGCGAGCCTGGACTGAAAGGTGATAAGGGTGAAGTCGGGTTTCCAGGTGAACCGGGAGAACCTGGATTCCAAGGTGACAAGGGTAATCAGGGCTCATCAGGTTTACCAGGAATTCGAGGAAAGCCAGGACCTCAGGGGCAACCTGGAGATCGAGGCCCAGACGGTTTGCCAGGCCCATCTGGCCCTAAGGGTTTTCCAGGGGATTTTGGACCACCAGGACAAAATGGTGCTGATGGCCCAAAGggGAATGCAGGAACAAGAGGGATTCCGGGCCCTACAGGAGTTACAGGACTTGAGGGAGATCAGGGCCCAGTAGGACCACCAGGGGCTCCAGGACTAGAGGGCAGACCTGGGAGGAAGGGTTTCCCTGGGAATCCAGGGGAGGAGGGAATGAAGGGCGAGCCTGGATTTCCTGGAAATCCTGGGATGCTTGGTGAGAGGGGTCTTATTGGTTTTGTCGGACCTGTCGGTGAGGTGGGGTTTCCTGGAGAAAAGGGAGATCGTGGTGAGATGGGTCTGCCCGGGCCACCTGGAGAAAAGGGAGCGATGGGACACCCTGGGGCCCCGGGTGAGAGAGGCCCATCTGGACCAGAAGGTACACCAGGGCCTCCTGGGTCTAGGGGCCTCAGTGGCACCAGAGGACCCAAAGGCATAAGGGGTGCAACGGGACCAGACGGACCAGGTGGAGACAAAGGAGTGGTGGGAATGAAGGGTCCTGAAGGCCCGCCGGGGAAACAAGGCTTCAGCGGACAAGtgGGTGAAATTGGAGAAACTGGTGAAACCGGACCAACTGGATTTCCAGGTGTTCAAGGACCAACTGGACCTCCTGGTGCAAAAGGCATCTTAGGAGAACCTGGTCCTCAAGGGCCATCAGGAGTATTAGGTCCATTGGGTGAGATTGGAGCAGTGGGTTTACCCGGAAAGGTTGGGGAGCAAGGCCTACCAGGTGAACCCGGAGAGAAGggtGTTGATGGATCTCCTGGGAATATGGGAGAGCAAGGCTTGATTGGAACTCGAgGCGACCCTGGGCTTGATGGGGAGGCTGGCCTGAGTGGCCCTGATGGAACTAAgGGTGAGAAGGGTGACATTGGTATGGAAGGAGAAACAGGTGAAAACGGAGCCATCGGATTTAAAGGAACAGAAGGCCGTGTGGGAGACCCTGGCATAACAGGTTTAAAGGGCCCTGAGGGCAAACCCGGAAAAACTGGTGAGAGGGGAAAACCTGGAGAGAAGGGCAGCAAAGGTCCCCAGGGTCACCTTGGCGAGACTGGACAAATGGGAGAACAAGGTACCATGGGTTTCATCGGGCCAAAAGGAAGCAGAGGAACTATTGGGTTTatgGGTGCTCCAGGGAAAATGGGTCAGCATGGAGAACCAGGTTTAGTGGGATATGAAGGTCATCAAGGACCACAAGGTCCCATGGGATCCACAGGACCAAAAGGTGAAAAgGGAGAGCCAGGTGATGATGGGAAGGTTGAAGGTCCACGCGGTCCTTTAGGTGACATCGGGCCTGTTGGCAACAGAGGAGAAAGGGGACAGCCAGGTGACCCTGGATACCAAGGTCACGAAGGTGTTCATGGGCAAAGAGGAAACCCAGGGGCTCCTGGACTCCCTGGAAATGCCGGGCCAAAAGGTTTTCCAGGGCCTAAAGGATCCAAAGGCAATAAAGGTGCAAAGGGCAAAAATGGCCCGCGCGGGAAATCTGGAAATCGAGGGTCACCTGGTCCTGTTGGTCTCCCTGGCCCCAGAGGAGTTGTTGGTCGTGAGGGTCCTGAGGGTGATCCTGGGATAGAAGGAACCCTTGGGAAAGATGGAGCTAAAGGAATGCCAGGTGAGCACGGAGGTGATGGGGAGGTTGGTCCACCTGGAAAAGCAGGTCCTCAAGGAAACACGGGTGTATCAGGTCTGCCAGGAATTCAAGGCTCTTTTGGGCCAAAGGGTGAAAGGGGCATCCCTGGCCAAGCTGGACCTCCAGGAAAAAGAGGATTTAATGGGGGAATGGGATTTCCTGGAAAACAAGGTGACCgtggggtcaaaggtcaaccTggtGACTCTGGTGAACAGGGATTTCCTGGAGTTCTTGGAATATTTGGACCAAAGGGGCCTCCTGGAGACCTTGGCCCAGTGGGAATCCAGGGCCCGAAGGGTCCTCAGGGTTTAATGGGTATGCAAGGAGTCATCGGACCCGTTGGTATCATTGGGCCTAGTGGTAACCCAGGACAACAAGGAGACAAAGGAAACAGAGGGGAAATGggTGTTCAGGGACCCAGGGGACTTCCAGGTCCTCGTGGACCACCTGGACCTCCAGGGCTTCCTGGTGTATCTCTCTCTCATGAAAGTGAAGCTCTTGGTGCTGCTTTAGTTATGGATTCCCGCTCCACTTTACGGTCCAAGACATATGAAGATACAGACCCTCTAATGCTGGACCAGGGAAGCCAAATCTTTAAGACTCTTCGCTACCTCAGCACTCTGATCCACAGCATAAAGAATCCTCTGGGAACACAGGAGAATCCTGCCAGAATGTGCAGAGATCTGTTTGAATGCGAGCACAGGTTGAACGACGGCACTTATTGGATAGATCCTAACCTGGGCTGCGCTTCTGACAATATTGAAGTGACCTGCAACTTCACCACTGGAGGTCAAACCTGCCTCAAGCCAGTCGCTGTTTCCAAGTTGGAGATTGGAGTGAGTCTGATCCAGATGAACTTCATCCACCTCCTGAGCTCTGAAGCTGTGCAGATCATCACCATTCACTGCCTGAACGTCTCTGTTTGGGCAGCAGGGGACTCCAAAACACCTTCCTCTAGTGCAGTGTACTTTAAAGCCTGGAACGGACAGATAATCGAGTCTGGGGGATTCATCGAGCCTGAGCTGATAAAGGACGAGTGCTGGATGACAGATGGACAATGGCATCAGACACAGTTCATGTTCCAGACGGAGGACCCAAACTTACTGCCCATTGTGGAGGTCCACAACTTCCCCAGCACAAAATCTGGCTCACATTACCACCTTGAAGTGGGGCCTGtgtgctttttataaaaaaaaaaaatcaacaatgaAAGCCTTGAATACCCCGATCAGCAGCATTACAGAGCCTCTATCTGGCCTAGAAACCAACAAAACTGTACATCTCCTCTCCAGCGTGGACTGCAGCCTTTAAACATGAGGAAAGAAGGAACTAGAGCAGCTTTGGAGAAAACAAGACTTCTTATGTGAGCAGCTCGGGATGACAGATTCTTTCTTTTCTGAGCTGGGATTTCTTCTGTTCGAAAACGAGGCCTGGAGATGTGGTTAGAGGTGCTTCCTAAACTCTTAATAGAAGTCTTAATTTATTCGTAGTTGGGTTTTTCCCAAATGATCCGTGTGGACAAGGaacaattaagacattttatttttaatgaagtacTTATTTTGTATTCTATAGTCATACATGatcatgtgtatttatacatgtacgtgtgtgtttgtatattttctgtgtAAAGTGCAATAGAGAATGGacagattgttttgttttttaaagatgaatctTCTGTTTGGCTGTTCTAGGCATTTGAGGTTTTACTGTCATATCATTCAATTCAGGTTCATTGTCTTGTGTACTTGTGTATATACCAGCAGGTCTGTTGTAAAAGCCTTCGATACCAACATGCATACAAAAACACGCATATGCATGAATTCATAGCTAGAATATCAGTTGAGGTGAATCCAGACTTGAAAAGCAACATATAAACGTCTACCTCCCATCTCTCATTTTTTGGTGTTTTGGGACAGTAAATGGATTCACATGCATTTAACTCCTGTGGTaagatttcaaatgtttttaacttaaGTGCCTTTTATACTTTGAAAgggaatatttttgtataaatctttaaaaaggaaaaagatctttttttttcagccaaacATAATTGTAACCCTTTATCTTCTAGTATGCCTTATTTGTACAAATGTTTGAACTTTAAGGGCTGAAGAATTATATTATCATAGCAGACATTGtgttaaaagtgctttatatCACTCAACTCTAGGTCTTTCCATCATTAAGTACATATATGCATTTCCATAAGCCCTATCTGACTGCAGTAGTAATTGTTTGACATGGTCTGTGTCATAATTGCTGATTTTTGTATGTCTTTTGTAAGGCCCGTGTACAAAGATAAATGTTGCAGTTAGAAACTGCAAACCTGAGTTGTAATAAGAAGTTGTTAAACTAAATGAGAACACTAGAATCTTCCACTATATTGGGTCTGTTATGAGCAGTGACTTTGACTTTGAGTCACGGCAAGctaattattgattattatgaGTTATGTATGATATTcttgtgaaatatatatgttgttttcaTCAAAACCGTCAGGAGCCATCTTATCTTGCCAAAAGAGGTTGTTAAATATCTGTTctttatttgtgtacatttacGATCTTGCTGTAATCCACGTTTTGTGATTTCAGAGCAGACAAAGAAAGGTGGATATTTtccaattaatattttatggtcAGGCATTACCTATGAACAACAGCAAACGCCAAAGAACGAAGATTTCAGCGTTTACAAATTAAATCCGTGATACCACAGAAACAGACAGCAGTCTTTATATCTGTTTGCCTTACTAAAGTTCTTGTTTCTGGCCAATCTCGTGTCTCATTTGAATAAAGGAAACATGTTGACAATCTTCA

Function

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030282 bone mineralization biological_process
GO:0005581 collagen trimer cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55036 lncRNA upstream 370175 16889197 ~ 16889977 (+) True G37308
TU55017 lncRNA upstream 432676 16827125 ~ 16827476 (+) True G37291
TU55011 lncRNA upstream 447735 16787830 ~ 16812417 (+) True G37286
TU54978 lncRNA upstream 599409 16660521 ~ 16660743 (+) True G37260
TU54917 lncRNA upstream 775037 16474708 ~ 16485115 (+) False G37227
TU55085 lncRNA downstream 34322 17350591 ~ 17350922 (+) True G37330
TU55096 lncRNA downstream 34887 17351156 ~ 17353096 (+) True G37333
TU55087 lncRNA downstream 38337 17354606 ~ 17357759 (+) True G37331
TU55088 lncRNA downstream 38337 17354606 ~ 17355806 (+) False G37331
TU55156 lncRNA downstream 209773 17526042 ~ 17527444 (+) True LOC122345691
XM_043238282.1 mRNA upstream 6253 17229394 ~ 17253899 (+) True LOC122344732
XM_043240527.1 mRNA upstream 97262 17035795 ~ 17162890 (+) True edil3a
XM_043240528.1 mRNA upstream 97262 17035796 ~ 17162890 (+) False edil3a
XM_043240526.1 mRNA upstream 97262 17035800 ~ 17162890 (+) False edil3a
XM_043240931.1 mRNA upstream 705588 16543835 ~ 16554564 (+) True LOC122346216
XM_043239182.1 mRNA downstream 3591 17319860 ~ 17328414 (+) True LOC122345236
XM_043239181.1 mRNA downstream 3591 17319860 ~ 17328414 (+) False LOC122345236
XM_043239178.1 mRNA downstream 5195 17321464 ~ 17328414 (+) False LOC122345236
XM_043239177.1 mRNA downstream 5197 17321466 ~ 17328414 (+) False LOC122345236
XM_043239180.1 mRNA downstream 5392 17321661 ~ 17328414 (+) False LOC122345236
TU54920 other upstream 698411 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 699420 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 699420 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 2539665 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 2608241 14647489 ~ 14651911 (+) False fgf5
TU55097 other downstream 48600 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 1526550 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 1526550 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 1622544 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 1622544 18938813 ~ 18940895 (+) False G37626

Expression Profile