RNA id: XM_043238610.1


Basic Information

Item Value
RNA id XM_043238610.1
length 3221
RNA type mRNA
GC content 0.46
exon number 19
gene id erap1b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10034953 ~ 10042310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAAgcgcttttattttaaaaaacaacttcCCATGATGCAAATGTTGAAGAATTGTATTTTCACTTTCACATTCTTTGATTAGAATGCACAGCTGAACCAAACCTAACACATTGGAGATTTTAACCGAGAAGCGTAGTTCCTAATCTGTAGTACTGGGCAGCCATGATTCGCTTTGCTCTGCTTGTGAATCTTTTAGTTTTGCCCATTTACCTCTGGGCTGCAGACACTCAAGAGACAACTTTATTTCCCACATCAATTAATGGAGAACCATTCCCGTGGAACAAAATGAGGCTTCCGGACACAGTATTACCCATTCGTTATGATCTCCTTATCCACCCCAACCTCACAAGTTTAGACTTTACTGGAATGGTGCAGATCCAAATTGAGGTCCTTGAAATCACCAAAACAATCATACTGCATAGTAAGGATCTTCACATTTCCAAAGCAAGGTTGCTAGGATCAGACATAGGTCAGCTGCAGGCCCTGAAGGTGCTAGAGTACCCATACTTCCAGCAGATTGCACTTATATCTGAGCATGCAGTGCTGAAGAGAGGCCATGTATATTCAATTCAACTGGAGTTTGCCGCCAACCTCTCTGAGAGCTTTCATGgattttacaaaagcacataTCGTACCAGCAAGGGAGACCTCAGGTTTGTGGCTTCCACGCAGTTTGAGCCAACTAGTGCCCGGGCAGCTTTCCCCTGTTTTGATGAACCTGCCTTCAAAGCCAACTTTTCCGTGCGGATTCGCAGAGAAGCAAAGCATATTGCCCTCTCAAACATGCCTAAGCTGAGAACAGTAGAGCTGCCAGACAGCCTGTTTGAGGACCAGTTTGATATGAGTGTTAAGATGAGCACATACCTGGTGGCCTTCATTGTTTCTGACTTTCTGTCTATCAGCAAAACGAGTCAGCATGGAGTCCAGATTTCAGTGTATGCTGTGCCAGAGAAGATCGACCAGGCAGAGTTTGCTCTAGATGCTGCAGTGAAGCTGCTTGACTTCTATGATGACTACTTTGACATTCCCTACCCTCTACCAAAACAGGATCTTGCTGCCATACCAGACTTCCAGTCTGGAGCGATGGAGAATTGGGGTTTGACCACCTACCGGGAATCAGGCCTTCTTTTTGACCCTCACAAATCTTCTGCTTCAGACAAGTTGGGCATTACAATGATCATCGCCCATGAACTGGCCCATCAGTGGTTTGGAAACTTGGTGACCATGCAGTGGTGGAATGATCTGTGGCTGAATGAAGGTTTTGCCAAGTTCATGGAGTTTGTGTCTGTCAACATCACCAATCCTGAACTGCAAGTTGAGGATTATTTCTTAGACAAGTGTTTTGAAGCCATGGAGGTGGACTCCTTGAGCTCCTCTCACCCAGTGTCCACACCGGTGGAGAACCCTGCTCAGATACAGGAAATGTTTGATGACGTTTCCTATGATAAGGGAGCTTGTATTCTGAACATGCTGAGAGAGTTTCTGACTCCAGATGCGTTTAAATTGGGTATTGTGAAATACCTAAAACGCTACAGTTACCAGAATACAGTCAATAGTAACCTGTGGGAAAGTCTGACCAATGTGTGTGACTCTGATGGTCTGGATGAAGGGAGACTGAAGGGTGATGAGTCCTGTCGGCGCTCAGTCTCACACTCTGGAGCTTCTaAATGGCACTCTGAGGATGAGCTGGACGTTAAGGCTATGATGGAGACATGGACGTTGCAGGAGGGCTTTCCACTCATTACGGTGGAGGTCAAAGGTCGCGAAGTTAGACTAAGTCAAGAGCGTTACCTCAAGAGTGATGACCCCTCACAAACATCcagCTTCCTGTGGCACGTTCCGTTGACTTACATTACCAGCGACTCGACCACAATTCACCGCTTCCTGCTTAAGGCCAAAACagATGTTTTGTATCTGCCGGAGGAGGTGGACTGGATCAAGTTTAACGTGGACATGAGTGGATATTACATTGTTCACTATGAGGGTTCCGGCTGGGATGACCTCATCGCGCTGCTCAAACACAATCACACAGCGCTCAGCAGCAATGACCGGGCCAGCCTCATCAACAACGCCTTCCAGCTGGTCAGTGTTGGTAAGCTTCCCCTGGATAAGGCTTTAGACCTGACACTGTACCTGAGCAAGGAAACTGAGATCATGCCAGTGACGCAGGGTTTCAGTGAGCTTGTGCCTCTGTACAAACTGATGGAGAAGAGAGACATGCTGGAGCTGGAGAACCAGATGAAGGGCTACATACTGCAGCTGTTCAGGAAGCTCATAGACCAGCAGTTGTGGACTGATGATGGCTCTGTGTCTCAGAGGATGCTGCGCAGCTACCTGCTCCTGTTCGGCTGTGTGCGGGGTCATCCTCCCTGTGTCAGCACCGCTACCCAGCTCTTCAACCAGTGGAGGGACACCGATGGGAAtatgagCCTTCCGAATGACGTTACTATGGCTGTGTTTTCTGTTGGCGCCCGGACTGAAGATGGCTGGGAATTCCTATTTGAGAAGTACAAGGAGTCCATGTATGTCTCGATGAAGAGCAGGATAAAGATGGCCCTCACGACCAGCCCTCTCGATCACAAGCTTAAATGGATGATGGAGCAGAGTCTGGTGGGAGAGGTGATGAAGACTCAGGATCTGCCATATATTGTGTCTTCCGTCAGTAAAAATCCTAAGGCCTACAAACACGCATGGGACTTTTTAAAAGCTAACTGGGACTCCCTGATTAAGAAGTTTGAGCTTGGCTCATACTCTATAGCGCACATGGTAGTGGGAGTGACCAACCAATATTCCACCAGAGAAATGCTAGCTGAGATTCGTAGTTTCTTCACTTCCTTGCGGGCTGAGACCGGAGCTGAACTGAGATGTATTCAGCAAGCCTTGGAGAACATTGAGGAGAACATTCGCTGGATGGACAAGAACCTCCCACTACTGAAGGCCTGGCTGCACAGACACTATGACCAGCAAAAGAAAATAGAGCTGTGAAGCACATACTGTAAATGTCAAAGTCATAGgtgtatacattttatagtgCAGCTTAAtagaatgcaaatgttttgataAGAACTTCGGTAAAGTGTGTGAAATAAGTGATACTGAATTTGTGAATATGGGGTGAATATTTTTGAAGAGCTGTACCATTGCTTGTAAAGGTAAAATGTAAGAATGTCATCTGTTTAAGAacatttcatcttaaaaaaattttttttgtgaactgga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09604 ARTS1; adipocyte-derived leucine aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51425 lncRNA upstream 998 10032439 ~ 10033955 (+) True G34911
TU51418 lncRNA upstream 6132 10008047 ~ 10028821 (+) True G34905
TU51323 lncRNA upstream 224103 9808449 ~ 9810850 (+) True G34861
TU51302 lncRNA upstream 267132 9767294 ~ 9767821 (+) True G34842
TU51301 lncRNA upstream 268604 9765970 ~ 9766349 (+) True G34841
TU51449 lncRNA downstream 21907 10064217 ~ 10118126 (+) False fam219ab
TU51451 lncRNA downstream 21907 10064217 ~ 10139733 (+) False fam219ab
TU51473 lncRNA downstream 60575 10102885 ~ 10106441 (+) True G34941
TU51490 lncRNA downstream 219302 10261612 ~ 10264441 (+) True G34957
TU51488 lncRNA downstream 243457 10285767 ~ 10287373 (+) True G34956
XM_043238598.1 mRNA upstream 6916 9863630 ~ 10028037 (+) True arvcfb
XM_043238596.1 mRNA upstream 6916 9863630 ~ 10028037 (+) False arvcfb
XM_043238601.1 mRNA upstream 6916 9863630 ~ 10028037 (+) False arvcfb
XM_043238599.1 mRNA upstream 6916 9863630 ~ 10028037 (+) False arvcfb
XM_043238607.1 mRNA upstream 6916 9863631 ~ 10028037 (+) False arvcfb
XM_043239505.1 mRNA downstream 18104 10060414 ~ 10065563 (+) True rad17
XM_043239506.1 mRNA downstream 18119 10060429 ~ 10065563 (+) False rad17
XM_043239507.1 mRNA downstream 18140 10060450 ~ 10065563 (+) False rad17
XM_043238530.1 mRNA downstream 23754 10066064 ~ 10069834 (+) True ccdc125
XM_043238531.1 mRNA downstream 23764 10066074 ~ 10069834 (+) False ccdc125
TU51316 other upstream 235595 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1163435 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1730802 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2024354 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 2236985 7754074 ~ 7797968 (+) True p2rx1
TU51450 other downstream 21907 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 686808 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 884513 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1004170 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1881918 11924228 ~ 11942072 (+) False smarca1

Expression Profile