RNA id: XM_043238777.1


Basic Information

Item Value
RNA id XM_043238777.1
length 1598
RNA type mRNA
GC content 0.51
exon number 5
gene id pgam5
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5393799 ~ 5398332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAGCTTTTCGGAGATTTCCGGTTTCCAAATATATTCTCTCACGCACGGCGTAGGAAGAAAAACGCCTTTTTATCCAGCCTTGACGACGCACCAGCGAAGGGCTTGTTATTTTGCCTGACGTTGCGAGGAGAGAGGAAACGACAGCGCTTGCTAGCCAGGGTGACTCGGCGCGTCGTCGCTCCGAAGAGCAGCCGTGAACGTTACTCTCCGTTGACTCGTCTCTTTTGGCTCATGTCGTTCCGGAGAGCGCTCAGTCTCGCGTGCGGCGTCGCCGGCGGGTCCGCGGTGCTGGTGTGCGCGGCGGTCGCGGCGGATAAGCACGGCTACTTCGCTGACGGATGCCGGTTGAGAGACGCTTTGGCTGCCGTGCGTGCGGCGCAGCCTCCGGCGTGGCCCGCTGCGAACGGGTGGGATTACAACTGGGACAAACGTGACCCCTCATCTCCGGTGAATGGGAAGAGAAAGGAGAGCGTCGGTGAGAATGGAAGTCCGGACGCGGACAACAGCAAACCCAAAGCCACACGCCACATCTTCCTCATCAGACACTCCCAGTACAACCTCAAGGGGGACGGAGATAAAGAGAGGATCCTGACGGCGTTAGGACGGGAACAGGCCGAGTACACGGGACAGAGATTAGCGGCGCTGGGACTGAAGTACGACGTTCTCATCCACTCTTCAATGACCAGAGCTACCGAGACGGCCAGCATCATCAGCAAATACCTGCCAGGTGTGGAGCTCGTGAGCTGCGATTTGCTGCGAGAGGGTGCTCCGATCGAACCCGTCCCGCCGGTCACGCACTGGAAACCCGAGGCAGCGGGCCCTGCAGTTTCCTCCGGAGGGCTGGCTGAGGATGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTTCGACCCAGCGGCCGCGTGGCTCTCCGAGCGCTGGGAGACTCGGGCTTCATGCCTCCAGATAAACTCACTCGCACATGACGCTCTCAAGCTAGACCAGCATGCCTCAAAACAGCCTAGAACCTAAGGATAGTTGAGGTGGGCAGATGTTAGAGTTGCAAAGGatcaaaaaaaaccaaaaaaaaaaaaaccttaaatgtTCTCctgaaactttttattaaatgccgTTCGAGTcacaatatttcagaatatggATTTCATATTCATCAGCTCCACTAGCTTGTTTAATAAAAACCTTACATAGCTGCAATTTATGAGAATAAGTGACAATTTAATTTGCAACTCTACCATCTGTTGCTGTGAACAGTGACTCCACAAGTGTCTTGAGggtattgattttgtattttttaaaagcgaGCGAGTTAAGAATCATTGATGTTTCTTCAATTATACACTCCCGTGCCATGCTTCGTCTGATCTAAGGTGGAATTAACCAgcaagtgtacttttttttatgtttatgacgAGGTGTCTTTTTCCAGCTTTATGCAAACTCTGGAGGCCTCGCTGAGGCACTTGGTGTGTATTCGCACCGTTTACGATCGTTTTAGAATCAAGGTTTGAGTTTGGTAAAAATGTGAGAGGCTGAGGAGGACTCTGTAGAATTGTTtgtatgttgttgtttatggcagtaaaaattaattcattga

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48972 lncRNA upstream 23286 5368434 ~ 5370521 (+) True G33257
TU48966 lncRNA upstream 57171 5336349 ~ 5336636 (+) True G33251
TU48875 lncRNA upstream 490433 4903128 ~ 4903374 (+) True G33182
TU48870 lncRNA upstream 665969 4644205 ~ 4727838 (+) False fbrsl1
TU48842 lncRNA upstream 800955 4592596 ~ 4592852 (+) True G33167
TU48915 lncRNA downstream 2983 5401315 ~ 5402784 (+) True G33206
XR_006251080.1 lncRNA downstream 57765 5456097 ~ 5468031 (+) True LOC122346031
TU49093 lncRNA downstream 70740 5469072 ~ 5539329 (+) True G33348
TU49099 lncRNA downstream 128517 5526849 ~ 5539398 (+) False G33348
TU49281 lncRNA downstream 419088 5817420 ~ 5870510 (+) True G33454
XM_043240682.1 mRNA upstream 367378 5014113 ~ 5026429 (+) True LOC122346032
XM_043240683.1 mRNA upstream 385198 5002008 ~ 5008609 (+) True ascc2
XM_043240679.1 mRNA downstream 104976 5503308 ~ 5547584 (+) True LOC122346030
XM_043240680.1 mRNA downstream 104976 5503308 ~ 5547584 (+) False LOC122346030
XM_043240681.1 mRNA downstream 104976 5503308 ~ 5547584 (+) False LOC122346030
XM_043240221.1 mRNA downstream 150505 5548837 ~ 5570088 (+) False atp8b5a
XM_043240218.1 mRNA downstream 150505 5548837 ~ 5570088 (+) True atp8b5a
TU48849 other upstream 770747 4622507 ~ 4623060 (+) True G33174
TU48610 other upstream 1249411 3605186 ~ 4144396 (+) False G33015
TU48613 other upstream 1249411 3605186 ~ 4144396 (+) True G33015
TU48185 other upstream 3125613 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 3375348 2010411 ~ 2018459 (+) False LOC122345711
TU49128 other downstream 206001 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 206001 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other downstream 226935 5625267 ~ 5647425 (+) False myo1ha
XR_006251052.1 other downstream 561503 5959835 ~ 5978584 (+) False tnpo1
TU49351 other downstream 688930 6087262 ~ 6088562 (+) True G33494

Expression Profile