RNA id: XM_043238895.1


Basic Information

Item Value
RNA id XM_043238895.1
length 3379
RNA type mRNA
GC content 0.44
exon number 9
gene id tbx16l
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15815277 ~ 15821734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtaaatttaataggttacagattacaaattacattaataagtgtatctttttctatttctttattaaagtaatttatcTGATTACATTTAACTACCTTTTGATAgcttttctaatgttttttaactgttaatcattttgaaaaattttaaGCAGGCAGGGTtaactttatattaatattcagcaCTTATTACTGTCAAGACTTTCAAAATTCTTTTTCACTTGAATTACTGTTATAATACTTTAATTGTGAAATGCAACCACCACAAATTCAAGACTCGCTCATATTTGCTTCGAGATCATAAAGTAATTGAAATGTAACTGATACAGATTACAGTTcaattttttctgtaatttaattatgtaatacaTTAACTGGTTACTTACTCCTCAACAACGCTGGTGGgacaataaaacataacttaAACATGACTGAAGACCCGTGTACTAGACGTGCTGATTCTTTGGTTCTCATAGGAAAATAACTTCTCTAggaaataatttagaatttgTTGTTGGCTACTTTCATGTTAAACATTACTGCCTTGATTTAAATAGTTTAGACAAAAAACAGTTGTATATTAAATGTGCGCACAcattaaaatgtctgaaaagTGTCAAATGTGAGCCAGTCGTTTTAATAGTTATTCATATGATTGCAAACTCCAAAGTTTTCCGTATGCAGGGGCTCAAGTTGATCACATGGGTTTGTTGCACTGATCAACAGAAAGCTACTgcgtttgacttttttttttgctaacaaAATTTCTCTGTCTGAAAGTCTATTTCTTGAAAAACTCAGGTGTTTGTGAAGATAGGTAGAAGTCTTTAACTGCTTCAAACATCTCCAAAACCCAAATAAAACTACACTTACTGCTGTCCAGGATTTTTCTGTTTAGGTCTAATTCAGAGGGTGTTACGATAGAGAAAGTTATTTAGCAGATTTTAATATTCAAGATTAGAAATGATCTGCTGAAATTTGACAGTTTGGCCAGTAGCTAATAAATAGTGACTTCCTGCAGTAATGAGGGGACAAACTGTTGGGGTGATTAACacctatatgtgtgtgtgtgtctgtatgggTTTGGAGGAAGTGTTAGGGAACCCTTGGCCTCTAAAGTCAGATGCACCCCCCTTTCCCCAGATCCAGAGCTTGTTGTTTCTACACACCTTTGTGGGCAAGCTGGAGCACAAACTGGGAACTGCGGGAGACAAAGAGGCAGATCAAAGACGAGACTGATGTTTTGACAGAAGTGCACATACACACCTCTGTCCTCTTTGAAGTTATGGAAAGGTAGCATCCTATGGATAGTCCTAGCAAGTCACTGGCTTCCTACAAACCCCTGGACAAGTCACTTTAGTTTGTTACTCCGGTCTCATGGTCATGTATCTCCCGGAGGAACGGCCTGTGCTGGACCTACCTTACCAGATGAATTATTTGGCTAATAACTATGGATATTATCCACAAGACTGTAAGGATCCCATTTTCCGCACTCAACATGGCCTCAACAGCAGGATGAACAGTCCTGAAGCTGAACTGACCTCGCTGCCAGTTCATGTGTCCCTGCAAGATCGAGAGCTTTGGGACAAATTCAGCAGTATTGGCACAGAGATGCTAATTACTAAGTCTGGAAGGCGGATGTTTCCCAGCTGCAAAGTAACAGTGACAGGACTGAATCCAAAAGTCAAGTATGTGGTGATAATGGACATGGTGCCGTTTGATAACCACAAGTACAAGTGGAATAAGGATCGCTGGGAAGTGAACGGTTCGACTGATCCACACCTGCCCAATCGGTTCTTCATCCATCCAGACTCTCCTGCACCCGGAGAGAAATGGATGCAGTATCCAATCTCCTTTCACAAGCTCAAACTGACCAACAACACCCTTAATTCTAATGGCCTGGTGGTTCTCCACTCCATGCACAAATACCAGCCCCGTCTGCACATAGTCCAGTCTCCAGACCCCTGTAATCCTCACAATCCTGGCGGATATCTGCGCTTCACCTTCCCTGAGGCTGCTTTTACAGCTGTCACAGCCTACCAGAACCAAGAGATCACAAAACTCAAGATTGACAACAACCCCTTTGCTAAAGGCTTTCGTGACAACGGACTGAATAGAAAAAGGTTTAGAGACAAAGAAAGCCAAGAGACCCAGGATTCAATTGGACAAGCCAAACAGCGTTTGACACCAAATGAGCATGTAGGACAGCCAAAGAAAGACGAAGTGGATGTGACTGTATCCAGCTCTGTTGACTGCAGCAGACGCCTGAATTCTTCAGAAGTGGCTTCCTCTGTCACTCCCAACCCTTTCATATCAGCCTTCATAAACCCCAGTACTGCTGGAGAACCTTCACCCCATCAGACCCACACCATTCTCAGCCTCGGTAACAGACACCTGAACAGTCCCAGAGAAGCCAGACCCTCCAGCTTCCATAGTCTGTGTGCAGCTTTGCCCGTGGCCCAGAGCTCCTGCGTCCAGTCCTCCACAGGAGACGTCAACCTCAGCAGACTGCCTTCTCAGATCAGCAGCCCTCTAAACCCTCAGCAGCACCATCACAGCAGCCCAGCCTCTCAAACCCCGGGCCGATCCATCCTCCAGCTCCAGCCTTATTTTCAGCCCCCTCCGCATCCCTCACGACAGTGTCCCGACATGGAGCTCCCCCTTCCTCTGCCTCCCAAACTGAGCCGGATGCAACTCCCTGAAAGTGCTCTGAGGAACCTGGAGATGAATCCAGTCTCTGACTGTATTAATCCGAGGCCCCTCACCAACATCCTCAACAGGATCCATTTTCGATCTTTAGCCTCTGGACCATCGGTGAAGGTCCTGCAAAATCCCCCCCAAGGGGAGCAGTACCTCCGCGGCGCAGACAGAGAGCTGCGTCCGCAGATCTATCCGGCGGTTCAGGAGTACATCGATCAGCAGTTCGTGCTGAGCAGCCAGACTGAACACAGATCGCAGATGGACTACATCAGCGCCAGACCGCTAACTGAATATTACTGCGAACAGCAGACTGGGAAATGAAGTTCATCAGTCATCATCGAATTATCCCTCACTTTGCTCATTTCCAGCAGAGCCTGAGCTGCTCTGCGTTAGTAGTTTACAAAGCAGAATCAAGTCAGGCACCGAGGGCTTCCCAACAAaagaatgtaaatattattttcagtgGGACATGATGTTGTTAGCTGTCACTGACGTCCATATTTATGTTTAGTCTGTTGCCGTCTGTCTGAACTTTAAACTGCTGAACATCTCAACACGAAACCATTCAGAGTTGTAGCTGACTTCAAGCAATTCTGCAGACTACACTTTTGCCGGttccatccattttttttcattttctacatTAAACCTAAATACATAGTTCTGGGTTAAGTTTGA

Function

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54610 lncRNA upstream 212 15814853 ~ 15815065 (+) True G37024
TU54606 lncRNA upstream 1029 15813103 ~ 15814248 (+) True G37023
TU54607 lncRNA upstream 1372 15813103 ~ 15813905 (+) False G37023
TU54542 lncRNA upstream 102083 15712977 ~ 15713194 (+) True G36984
TU54451 lncRNA upstream 168170 15643295 ~ 15647107 (+) True G36948
TU54555 lncRNA downstream 158 15821892 ~ 15823751 (+) True G36993
TU54628 lncRNA downstream 38025 15859759 ~ 15860103 (+) True G37038
TU54639 lncRNA downstream 96772 15918506 ~ 15919285 (+) True G37047
TU54775 lncRNA downstream 231298 16053032 ~ 16053819 (+) True G37123
TU54772 lncRNA downstream 231512 16053246 ~ 16053897 (+) False G37123
XM_043238748.1 mRNA upstream 3260 15807811 ~ 15812017 (+) True eral1
XM_043238306.1 mRNA upstream 60092 15733936 ~ 15755185 (+) True LOC122344749
XM_043238309.1 mRNA upstream 60092 15748967 ~ 15755185 (+) True trpv1
XM_043238307.1 mRNA upstream 82442 15728431 ~ 15732835 (+) True shpk
XM_043240508.1 mRNA upstream 89096 15717866 ~ 15726181 (+) True p2rx5
XM_043240590.1 mRNA downstream 39320 15861054 ~ 15875316 (+) False rufy3
XM_043240591.1 mRNA downstream 39322 15861056 ~ 15875316 (+) False rufy3
XM_043240595.1 mRNA downstream 39323 15861057 ~ 15872935 (+) False rufy3
XM_043240592.1 mRNA downstream 42578 15864312 ~ 15875316 (+) False rufy3
XM_043240594.1 mRNA downstream 42585 15864319 ~ 15875316 (+) True rufy3
TU54012 other upstream 1094790 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1163366 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1509973 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1509973 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1522777 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 662268 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 662268 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 664886 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1543135 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 3021085 18842819 ~ 18847674 (+) True arsk

Expression Profile