RNA id: XM_043238920.1


Basic Information

Item Value
RNA id XM_043238920.1
length 5454
RNA type mRNA
GC content 0.45
exon number 20
gene id grin1b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8647747 ~ 8673117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACTGATTCCGTGTGACTTAAACATTAACGTTAGAGAATGCATCCAATTAGTTCAATCATGCGGTGCTGTGATGACCTGAGATTTTCCACGCATTAACGCAAACGTTTTGAAGTCTATTCGACCGTGACAGCTCCGCGATATCAGGCGTAATCTGCGAGTGCGCGCGCATCAGTGCGCGAGCTCAGTTCTCAGCACCAAGGACAGCGTCTCTCACAGAGCATCAGGTCACCCTAGACAAAACCTTGACTGCGATTCAATCACGCCAAGAGCGGGACAAGTGGACGCGGACGACTACAACGTCTccgcaaagctgatttttccaCCTTctccacagagagagagagagcgcttaAGCGAGACGACTATCAACAGGAGCGAGCGTCATTCTCCACAAAGGCGGGTTGACATGGTTCTTGAATATGAACGGGTTTCATGAGCGGACTCAATGAGTGAAACCCATTCCTCTGCGGAGTAGACTGTCGGGCGATCGCATTCCAGCGCAGTGAGAGCGGATCGGTCTAATCAACGGGCATCGACACGCATCCTCCACGGGGCACTCGGCTTGACTCCTCTGCCATCCAGGGCAAAATGCGTCTGGTTCTGTTCGCCTTCCTCATCTCGTGCTCCTGTGCGAGAGGCGGATGCGAACCCAAGACTGTGAATATCGGGGCTGTCCTGAGCCAGAAGAGATACGAACAAGTGTTCAAAGACGCCGTCACCCAAGCCAACAATATTTACGGCAAAGATAAGTTCAAGATGAACGCTATTTCAGTCACCCATAAGCCAAACGCCATCCAGATGGCACTCTCCGTGTGCGAGGATCTCATCTCTAACCAGGTGTATGCGATCTTAGTGAGCCACCCACCCCAGTCCAACGATCACCTGACTCCCACTCCGGTGTCCTACACAGCTGGTTTTTACCGTATCCCTGTAGTGGGCCTCACCACCCGCATGTCCATCTACTCTGATAAGAGCATCCACCTCTCCTTCCTGCGCACGGTGCCGCCGTATTCCCATCAAGCCCAAGTGTGGTTTGACATGATGCGTGAGTTCCAGTGGAATCACATCATCCTGATTGTGAGTGACGACCACGAGGGCAGAGCGGCACAGAAAAGACTGGAAACCCTGTTGGAGGAAAGGGAGACGAAGGCAGAGAAAGTGCTCCTGTTCAGCCAAGACACAAATCTGACGGCTCTGCTCCAGGAAGCCAAAGAGCTAGAGGCCCGAGTTATCATCCTGTCTGCAAGTGAAGACGAAGCCGCAGCCATTTACAAAGCAGCTCGCCAGCTCAATATGACAGGCTCTGGTTATGTGTGGCTGGTTGGAGAAAGGGAGATGTCTGGTAAAGCACTGAGTGAAGCCCCAGATGGCTTGCTCGGCCTTCAGCTTATCAATGGCAAGAACGAGTCTGCGCACATCTACGATGCCGTGGCTGTGGTGGCCCAGTCCATTCAGGAGCTCTTTGAGAAGGAGAATATCACAGAGCCTCCTCGAGGCTGTGTTGGCAATACAAACATCTGGAAGACTGGCCCACTCTTCAAACGAGTGCTGATGTCATCCAAGTATCCAGATGGCCTGACAGGCCGCGTGGAGTTTAATGATGACGGAGACAGGAGGTTCGCCCACTACAGCATTCTGAACTACCAGAAAACCCGGCTGGTGCAAGTGGGCGTATACAATGGCTCGCAAGTTGTAATGAACGCTCAGAGGAAGATTATTTGGCCAGGAGGAGAGACTGAAAAACCAAAAGGGTATCAGATGTCAACAAGATTAAAGATTGTCACCATTCATCAAGAGCCCTTTGTCTATGTGAAACCAACGCTTCGAGATGGAACATGTAAGGAAGAGTACACTGTAAATGGAGTCCTGATCAAAAAAGTGATCTGCACTGGCCCCAATGAGACCATTCCAGGTCGTCCCATAGTGCCTCAGTGCTGCTATGGGTTCTGCATTGACCTTTTGATCAAGCTTGCAATGACAATGAACTTCACTTACGAAGTGCATCTAGTGGCTGATGGCAAATTTGGCACTCAGGAGCGTGTGAATAACAGCAACAAGAAGGAGTGGAATGGCATGATGGGAGAGCTCCTGAGTGGCTTGGCAGACATGATCGTGGCTCCACTTACAATCAACAATGAACGAGCCCAGTATATAGAGTTCTCGAAACCGTTCAAGTACCAGGGGCTCACGATACTTGTCAAAAAGGAAATACCACGCAGTACACTGGACTCGTTCATGCAGCCTTTTCAGAGCACTCTGTGGTTACTGGTGGGTCTATCGGTCCATGTTGTGGCGGTGATGCTCTACCTATTAGACCGTTTCAGCCCGTTTGGAAGGTTTAAAGTAAATAgcgaagaggaagaagaagatgcCCTCACGTTATCCTCTGCTATGTGGTTCTCCTGGGGTGTACTTCTGAACTCCGGCATTGGAGAAGGTGCCCCTCGGAGCTTTTCAGCGAGGATTTTAGGTATGGTGTGGGCTGGTTTTGCTATGATTATAGTTGCATCTTATACTGCCAATTTGGCAGCCTTCCTGGTGCTGGATCGGCCTGAGGAGCGCATTACCGGCATCAACGACCCTAGGCTGCGAAACCCATCAGACAAGTTCATCTACGCCACAGTGAAGCAGAGCTCTGTGGACATTTACTTCCGGCGCCAAGTTGAGCTAAGCACCATGTACCGCCACATGGAAAAGCACAACTACGAGAGCGCCGCTGAAGCCATCCAGGCCGTGCGAGACAACAAACTCCACGCGTTTATATGGGATTCAGCAGTGTTGGAGTTTGAGGCCTCGCAGAAATGTGACCTGGTCACCACAGGGGAGCTGTTCTTCCGCTCTGGATTCGGTATCGGGATGCGTAAAGATAGCCCGTGGAAGCAAAATGTCTCACTGGCCATCCTCAGTTCCCATGAGAATGGCTTCATGGAGGACTTGGATAAAACCTGGGTCCGTTATCAGGAGTGTGACTCCAGAAGCAATGCACCAGCCACACTCACTTTCGAGAATATGGCAGGCGTTTTTATGTTGGTGGCTGGTGGCATCGTCGCCGGGATCTTCCTCATCTTCATTGAGATCGCGTACAAACGACACAAGGATGCACGCAGGAAGCAAATGCAGCTGGCTTTTGCAGCAGTTAACGTCTGGAGGAAGAACTTACAGgatAGGAAAAGTGGTAGAGCAGAGCCCGACCCCAAAAAGAAAGCCTCTTTTAGGTCCATCAGTACCAACCTGGCCTCCAACATCAAGAGACGTAGGTCGTCCAAAGACACGCCATATCCAACGGACATTACCGGCCAGCTCAACCTGTCAGACCCCTCTGTGAGCACAGTGGTGtgaaaatggagagagaaagagaatttgaaaggcagaaagaaagagagagagagagagagactggaaaAGCGGGAGGCGGTGGGCTCGAGACAACACCTTCAGCGCCGCCATTTGAGCAAAATCCACCCTGTCTCAGCATATGCACACTGGATATGAAACTTTTATGGACACACTGTGCCAAATTCAACCACACTGGAGCGAATTCACACTGCCACACCAGACTaacgcattcacacacactcacaaaaaaaaaacacaacacacacacacacacatgcgtacacacaaacacaaagtgcttcactttttaaaattttttgcaCATATCTAAAGagttttttgtgaaatatgtatatatatatatatatatatatttagatttcagTTTCTCCACATTATTAGATCACCAttcataataacaaaataataataatactgaatagtttttcacttttatgatTCAGGCATAATTATGTTCCATACAGtacatatgtataatatgtCTTTCTACCTCCACCTAAGATATATGTAGCTTATCTTAACACTTGCGTAGTGTTTTGGTTTTCCCATTTGAAAATAGCAAACACAGAACTTAACTTTTGACTTCTTTGTATATTTAGATTTGAAAAGTAGGTTAGGGTAGAAATTGTGTTGCTAAAAATACTACTGTAGATTTTGATCATCGTTGCACTTTGCCGTTTCTTAATATGCGATTCTCTCCCTTCACTGCCGTCTACAGAACACTCTCCTTAAGCTGTCCGGGTTGCTTAGGACACATACTGTGGATCTTTTTTCgctactttatttatttgttcatgttttgaATCTTTTATACAAAAACAACGATTTTTGGATGAGAATTACGCGAATATCAGCATATTATTCGGGGTCTATCCAGCCAGGGGCTAAATGTAGCAGATCCAACCTCGTTTATCATAAAAGGTTAAAGACAAAACTTCAGATGAACGAAAGGAACCCGCTTATGATAAAGAGTGGCGTAGATGTAATGAAGCAGATATTATTACAGGATCTTTCGAGCTTAATGTTGAACCTTGCTTGAAATTCCCTGTAATAATTTCTGTATCATTGTTGTGAGCTGGTAGCTAGCATCTTTAAGCTACCAAGCTGGGGACCTTTCCTCACATCgtatatatatttcatcatgCCATTATAATATATGAGCAGTATTTTGTCTGTGTGAAATAATAACACTAGATGCTATATACACGGTTTGTTGTTAAGCTTTTGCTCTGTGGACTAGTTGAATGGTTACCGGCAAAAGTGTTCATTTATAATACGAGTCAGTCGTCTTTTTCCGTGGGCTTTTAAAAGTATACTGACCAATAATAGGCGTATTAGATCACTGTATAGATCGTTTGTCTCAAACAATCAATCTGAGGGCTTTGCTAACTATTGTGAGAAGTTTAGAATGTGAACTACGCGTACTGTAACAGTAACCGTTTTATAAGATGAACACATTAATGtgagaaaaatatatgttttagattaaaatggaGAGTTTTTATAGAAAAGCATTAGTTTCATGGTTCAGGGTTTGGTGGTCTTAGCTTGAAAATATTATGCTGGGTCGGGTTCAGCAAGTGTCTGAAGTCCAGTTTTACTGTGAACATGACTGTGAACTGCTTTGTGAAATTCGTTAAGCAGAAACACAAATTCATAATCAGTCCTACATAGAGAAATATATATGCTGCCATACGCACTGCGGTGTCCATCAAGCTGATATTTGATCGTATAATTGAAATCTGTGCGATTGAAACCCACGATGGTGGCAGGGAATAAATTAAAGTGTGTGGCCTGAAGTATTTGCGAGGCTCAAAAGGAAGCACATCTTTGACAAACAAAGCAATGTAACCCTTTCACTGTTGTATGCAAACACGCATTGTTTCTAAAGCTTTAAATAATTGCAAGGCCATTTAGATCTGCTTTCACCATATTTCTCGACCACCAAATGTGCTTTTGATGACTATTCCAATactgtttgtgtaaaaaaaaaacaacaactctgaATTGAATTCAAACAAagatatatgttaaaaaatgtataactgCTATACTCCAGTGtgccaataaaatatatatcaaatgtaaaaatgaaa

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50752 lncRNA upstream 5073 8642191 ~ 8642681 (+) True G34449
TU50715 lncRNA upstream 82258 8564645 ~ 8565496 (+) True G34418
TU50681 lncRNA upstream 108036 8532539 ~ 8539718 (+) True G34409
TU50665 lncRNA upstream 174409 8472435 ~ 8473345 (+) True G34398
TU50654 lncRNA upstream 187515 8456788 ~ 8460239 (+) True G34387
TU50787 lncRNA downstream 189729 8862846 ~ 8864201 (+) True G34466
TU50795 lncRNA downstream 200978 8874095 ~ 8874695 (+) True G34470
TU50798 lncRNA downstream 265148 8938265 ~ 8939370 (+) True G34472
TU50809 lncRNA downstream 320779 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA downstream 320779 8993896 ~ 9001220 (+) False G34480
XM_043239031.1 mRNA upstream 14957 8631391 ~ 8632797 (+) True spaca9
XM_043240152.1 mRNA upstream 54222 8589434 ~ 8593532 (+) True barhl1a
XM_043238585.1 mRNA upstream 58577 8575011 ~ 8589177 (+) True cfap77
XM_043240296.1 mRNA upstream 202843 8436564 ~ 8444911 (+) True bco2a
XM_043238675.1 mRNA upstream 212371 8432779 ~ 8435383 (+) True sdhda
XM_043238925.1 mRNA downstream 4384 8677501 ~ 8685223 (+) True LOC122345092
XM_043238565.1 mRNA downstream 12841 8685958 ~ 8689618 (+) True LOC122344920
XM_043238188.1 mRNA downstream 16700 8689817 ~ 8696328 (+) True nelfb
XM_043240472.1 mRNA downstream 26604 8699721 ~ 8702028 (+) True LOC122345932
XM_043238583.1 mRNA downstream 29169 8702286 ~ 8704230 (+) True LOC122344932
XR_006251032.1 other upstream 343603 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 637155 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 849786 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1081178 7558940 ~ 7566576 (+) False svopb
TU49925 other upstream 1201538 7426981 ~ 7446216 (+) False G33890
TU50789 other downstream 194396 8867513 ~ 8871518 (+) False man1b1b
TU51316 other downstream 1123273 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 1391100 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 2056001 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 2253706 10926823 ~ 10933163 (+) False senp3a

Expression Profile