RNA id: XM_043238940.1


Basic Information

Item Value
RNA id XM_043238940.1
length 1050
RNA type mRNA
GC content 0.51
exon number 4
gene id rom1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26796255 ~ 26800046 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTTGTGGGTAAGATGAAGTTCACTTTTCAGAAAAGGGTCAAGCTGGCCCAGGGTTTGTGGCTGCTCTCATGGTTGGCAACTCTGGGTGGAGCGGTTACCTTCACTTTAGGATGCTTCCTAAAGACTGAGCTTCGAAGGAGGGGAGAGGTAATGGACAACACAGACATCCACTGTGTGCCCAACACCTTGATGATTGTGGGTCTGGCTTCGATGGGCATCAATTACTTTGCCAGTCGAATCTGCCAGGATGCTCTAGATCCTGGGCGTTTCCCACGATGGAAGACCTATCTGAAGCCCTATTTTGGATGCTCAGTATTCTTCACCTCCCTCATGCTGATTTCAGTCATCTTGAGTTACGCCATGAAGGGCAGCCTGGAGACCTCCCTGAAAATCGGCTTGAAGAATGGCATCCGCTTCTACAAGGACACCGACACCCCAGGCCGCTGCTTCCAGAAGCAGACCATTGATCGCCTTCAGATGGAGTTCCAGTGCTGTGGTAATAACGACTACAAGGATTGGTTTGAGGTGCAGTGGATCAGCAACCGTTACCTGGATTTCAGCACTAAGGAAGTTAAGGACCGCATTAAGAGCAATGTGGATGGCCGTTACTTGTTTGACGGTGTGCCCTTCAGCTGCTGTAACCCTAGTTCTCCTAGACCCTGTATCCAGTACAAAATCACCAACAACACCGCCCACTACAACTACGACCACCAGACCGAAGAACTCAACATCTTCATTCGTGGTTGCAGAGAAGCCCTGGTCAACTATTACATGGGACTGATGAACACTATTGGCGCAGTggttctgtctgtctttctgcttCAGTGCTCAGTGTTGGCCAGTGTTCGTCTCCTGCAGACGTCTTTGGAGGCCGTCGCTGGACAGGAGAACGTGGAGATTGAAACCGAGGGCTACTTACTTGAGAAAGCAGTGAAGGAGACCTTCATGGAGTATATGGATCCTGTGCTGAAGCTCCTGTTGCTGAACCAGGTAACCGCTCCTGAAGCCAAACCGGGAGCAGGGGCCACTGGAACCACCACCAGCTAA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 422433 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 642552 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 677172 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 1012664 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 1067785 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 76544 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 76544 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 281955 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 299769 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 315921 27115967 ~ 27146962 (-) True LOC122344810
XM_043239284.1 mRNA downstream 7237 26769931 ~ 26789018 (-) False rps6ka4
XM_043239283.1 mRNA downstream 7237 26769931 ~ 26789018 (-) False rps6ka4
XM_043239282.1 mRNA downstream 7237 26769931 ~ 26789018 (-) True rps6ka4
XM_043239285.1 mRNA downstream 9426 26769931 ~ 26786829 (-) False rps6ka4
XM_043238198.1 mRNA downstream 76509 26673097 ~ 26719746 (-) False flrt1a
XM_043238941.1 mRNA upstream 2338 26802384 ~ 26809937 (-) True si:dkey-273o13.3
XM_043238366.1 mRNA upstream 16874 26816920 ~ 26820637 (-) True cdca5
XM_043239158.1 mRNA upstream 21252 26821298 ~ 26851848 (-) False clip1a
XM_043239159.1 mRNA upstream 21252 26821298 ~ 26851848 (-) False clip1a
XM_043239156.1 mRNA upstream 21252 26821298 ~ 26851848 (-) False clip1a
unassigned_transcript_1081 other downstream 684853 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 686685 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 694846 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 704259 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 706467 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 582875 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1089077 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1455782 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2660539 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2816953 29616999 ~ 29655061 (-) False eng

Expression Profile