RNA id: XM_043238953.1


Basic Information

Item Value
RNA id XM_043238953.1
length 1555
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC122345124
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30520606 ~ 30523419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCCCGCTTCTGCGGAGGACGCGCGTGCGTGTCGCGCACTTCTGACGCGACGGCGTGCGGTTCCGTTCGACGCGCGTCTCGGCAGCGCGTCAATAAACTCAATGGCCGTGACCGAGAAACTGATCCAGAGCGTCCACGCTTACCCGGTGCTTTATAACGTGTCGCTGCACGATTATCGCAGCGCGGAGCGGCGCGTGAAAGCGTGGAGGGAGGTCGCCGCGTCCGTCGGTCTCTCCGTGGTGGAGTGCAAGCGGCGCTGGAAGACGATCAGGGACCGGTACATCCGCGAGCGGAGGCTGTGTCAGCTGCGGAGGGAAGAAGGCGGCCGGAGGCTTCATTTCTGGCCACACAGAGAAAGCCTGTCGTTTCTGGACGCTCACGTCAGGAAGAGGAAGCGTCTCGGTGAGCAGCCGGACGACTCTCTGGACGAGTCCAGCGGCGGAGACTCCAAGCCCGGCTCGGACACGGTCCAGGAGCGTCCGCTCAAAGCTCTGTCCATCGTCAAGCCGGTGACCCAGCTGCTGCTGACCGGTCTGCCTCCGGGCCTGAAGCTGCCCCAGCCGCCCGCTCCGAGCCCAGCGCCGCCGGCCGTCACCGGAGAGATCGACGGCAAGACGGAGAAAGACAAGGAGAAGGCCTTCGACGAGGACGAGCTGTTTCTCCTGAGCTACGTCCCTGCCCTCAAAAGACTGACGCCGCAGAAAAGAGCCGCCGTCAAGATGCAGATCCAGCAGATCATGTTTGACGCAGAGTTCAAAGAGCAGCTCTGACCCCGGATGTGCTTCCTTTAGTCACGTACCGCCACAAGAACTAGCTCTTCAGCTTTTTCAAACgcaacatttctttcttttttctctaaatgctcaccaatttttttttttataaagatacagcaaaagcagtgatattgtgaaatatttttactatgtaaaatgtctgttttctatgtgaatgtTGAACtgtagtttatttctgtgaattctttcagtcttcagtgtcacgtgaaattattagaatatgcttatttgctgctcaagaaacatttcagatttttatcaATGTAGAAAACAGTTTAGtccatttttttcaggattctttttatatataacttgtGGGGGGTGGCAtagaaaaatatacttttatttaactaaGATGCTTTAAAAAGTGACTCAATGGCTCACAAAAAACGTTAATAATGTAGCAAAGGATTTCTTTTTCAgctaaatgctgtttttcaaaACCTTCCATTTGTAAGAAACCTGAAAAAGTCTAATTGGctgttttcaacaaaataatgcatgttttttgagcagcaaatcagaatattagggACTAATCATTATTGGACTAATGATACggaaaaaaatcagctttgaaatcacagaaataaatgaaagctgaGGTTCGGTGAGCAGAAACTTCTCTGGTAGTTTAAGTAGAAGTTAGTTTGTCGTGACGCTATTCGTtgaatgcatttctaaaaatattttcagcattaattGTCAGATTTGCTCTACTGCTAAAGAGAGAATAAAATGTGTGCCAACGACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60202 lncRNA downstream 2151 30516065 ~ 30518455 (-) True G40684
TU60191 lncRNA downstream 7636 30504796 ~ 30512970 (-) True G40680
TU60182 lncRNA downstream 29728 30490514 ~ 30490878 (-) True G40671
TU60188 lncRNA downstream 36364 30484016 ~ 30484242 (-) True G40677
TU60187 lncRNA downstream 38380 30482021 ~ 30482226 (-) True G40676
TU60181 lncRNA upstream 40698 30564117 ~ 30564377 (-) True G40670
TU60183 lncRNA upstream 42265 30565684 ~ 30566156 (-) True G40672
TU60224 lncRNA upstream 43832 30567251 ~ 30570100 (-) True G40698
TU60227 lncRNA upstream 66778 30590197 ~ 30590640 (-) True G40701
TU60251 lncRNA upstream 107609 30631028 ~ 30733360 (-) False G40711
XM_043240155.1 mRNA downstream 9327 30491031 ~ 30511279 (-) True mbd2
XM_043240156.1 mRNA downstream 9343 30491333 ~ 30511263 (-) False mbd2
XM_043238724.1 mRNA downstream 356589 30122226 ~ 30164017 (-) False trabd2a
XM_043238723.1 mRNA downstream 356589 30122226 ~ 30164017 (-) True trabd2a
XM_043238950.1 mRNA downstream 427030 30087966 ~ 30093576 (-) True rnf170
XM_043240129.1 mRNA upstream 12415 30535834 ~ 30537915 (-) True LOC122345715
XM_043238655.1 mRNA upstream 17078 30540497 ~ 30542440 (-) False LOC122344973
XM_043238653.1 mRNA upstream 17078 30540497 ~ 30542440 (-) True LOC122344973
XM_043238652.1 mRNA upstream 52869 30576288 ~ 30580328 (-) True LOC122344972
XM_043240921.1 mRNA upstream 67424 30590843 ~ 30613109 (-) True fubp3
TU59790 other downstream 427093 30091949 ~ 30093513 (-) False rnf170
TU59791 other downstream 427093 30091949 ~ 30093513 (-) False rnf170
TU59650 other downstream 593773 29926385 ~ 29926833 (-) False LOC122344966
XR_006251000.1 other downstream 865545 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 1030402 29460585 ~ 29490204 (-) True G40182
TU60232 other upstream 77482 30600901 ~ 30603493 (-) False fubp3
TU60233 other upstream 81425 30604844 ~ 30613141 (-) False fubp3
TU60256 other upstream 107609 30631028 ~ 30696688 (-) False G40711
TU60253 other upstream 127522 30650941 ~ 30696688 (-) False G40711
TU60266 other upstream 266214 30789633 ~ 30792719 (-) True G40713

Expression Profile