RNA id: XM_043238984.1


Basic Information

Item Value
RNA id XM_043238984.1
length 4002
RNA type mRNA
GC content 0.43
exon number 25
gene id lrsam1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7124060 ~ 7133933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGAGAGGGACAATACTAGGTAACACGGAAAACAAATGAATACCGAAACATTTCAACAAGCCCATGTTTTGatgaaatgatttaatttagcgGTTAATCGCGTATATTCGTCTTTTTACATTCGCATGCGCCAGTCAACTGTCACACTAACATCCAGCGGCTTTTGTGGATGTTGTTAGGTTTTGACTAGGCAAACAAAATCTGACTTGCCTCAGGATGTTTCTGTTCTCCAAAAAGAAGAAACCAAGTGAGGATTCAGTAAAACGCCTGGAATACCAGCTATGCTTGGCCAAAGAAGCAGGCGCTGATGATATTCTGGACATTTCTGCCTGTGAGCTTACAGAGGTTCCCTCCTGTGCCTTCTCCATATGTAAAGTCCTCCAGAAGAAAGTGTTAATTCTTCATGGAAATGACCTGAGGTCACTTGTTCCTAAAGGTTGCTGCATTGGTGCCTTAGCAACCTTAAAGGTGTTGGACCTGCATGAAAATAAGCTCACGTCACTTCCTGATGGCATTGGGCAGCTTTTGTCCTTGCagGTGCTGAATGTAGAGAAGAACCACATTAAACAGCTGCCGGACTCTATAGGGGATCTTCGGCATCTACAGACACTTAACGTGAAAGGGAACAGCCTCTCTGTCATTCCTGCATCTGTGGGACACATGAGTAGCCTGCGTACACTAGACATGAGCGAGAACGGCATTAGAGAATTACCTAAAGAACTGGCCAATGTTCGCACTTTGGAAAGCCTGATCCTGGATGCACAGGTTATGAGATATCCACCTGCGTCAGTGTGCACGGCCGGCACAGAGGAAGTGCAGCGCTACCTCTGTTCAGAGATGGGTCTGGAGTATTGCCCTCCATCACAGTATCTGCTGCCTGTACTGGAGCATgatggagggaaggaggaggaggattcTGTTGATGGCGAAGAGATGGCCTGGCAGAGCAAATTCATGGACTATGAGAAAAGAAAGGAGCAGAAACATCTGGAAAAGTTGATCTTTGAGAAAGATCttgaagagaaacagagagagcaCACTCAGCTCCTCCTGCTCAACAACTCTCACAAAGAGGACGTCCTGCTGTCCGTCAAACTGGAGCAGCAAAGGTTGGAGTTAGGTGTGTCTCAGCAGCAGAAGGCCCAGGAAACAGAGAGGCAGAAAATGCTGGAAAAAGTACGCCTGGCAGAGAACAATATCATGAGTCGCATCTCTGACCTCCTGCTTGATAGCAAACGCCAGGCAAAGAGCGCCGAGTTTCTGCAAGCTCTGGAGGAAGACCGtatacgAATGGAGCACCTTACCGCTATCACACAGGATGAAGCCAATTCTCTCAGGAAGAAGGAAGTGGCAAGTGCCATGCAGAGGATGCTGTCAGAGAGCTACTCTGTAAGGTTACTTCAGGAGGCCAGGGAAGCCAAGACACAGATTCTGGTGTCCGAGACCTGCATGAGTTTGGACTATATGGACAGAAGGTTTGACCAGGTGTTGTCTCTACAGCAGCTAGACAAAAGCAAAGCCATTAGTCAGATCCTTGAAGAGGAGGAAATGCAGAAGGCCGCCTTTGAAGCCCTCCAACTCCAGAAGGACAGCGTGCATGCTTATATCCGTAATCAGATTAAACTCATAGAGGCAGAGTTAATGCAGTTGACAAAGCTGGAGGTTAAGAGGAGGAATTTGGACACGGAGAATCTGCAGGAGGTGTTAGCTGACCAGAGGACTGCTCTGACTGATCTACTGCAGCAGTTACTCAAACAGAAGGACCAAAGAGAGGAGGAACTCAGGATAGTTTTGatggcAATGGAGCAGAAAAGTGAATCCAATCAGCAGAACTACTGGATGATCCAGTATCAGAGGCTCCTGGATGCCAAACCTCTGTCTCTGCGGATGCAGGAGGCAGCTGTAAATGCAGATCTGGGGAGTCTGCTGTGTAAACTCTCGGCTCAACACTACCTGCCAATCATAGCTCACCACCGAATCACTGCTGAGGCCTTGCGACACATGACCGCTCGAGACCTTAGAAAGTTGGGGATCAATGAGGTCGGAGTGCAGAAAGCTCTTCTCCACTGGGCCAGAGAACGCACTCTGTCTGACCCATTGCCTAAAACAGCCAAAGAGATGCAGGAAGCTGGTCCATCCACCCCAAGCGCCCCACTTCAGCAGCAGCTCACTCCTCCACTGACCCCCAGTACCCCCCTCACCCCCACTGCCCCAAGTCCTGATAGATGGAGCAGCTCCGAGTGTGTGGTGTGCATGGAGCGTGAGTCACAGGTGATCTTCCTGCCATGTGGGCATGTATGCTGTTGCCAGACCTGCAGCGATGCCCTGCAGTCCTGCCCTCTGTGCCGTGGCTCCTTATCTCAGCGGGTCCGTCTTTACCACGGCTGAGCGTCCTTCCATGGTCAGGATCGTATCTCGTGTGTCATTGTTGCATTCATTTCTCCACTTGCTGCATGAAATCATAGTCTGTGAACCTTCAAGCACTTTAGATGTTACTGGATTTTTTCTTCCACTACAGCTAGCCAATCAAAAAGGAACTTACACAGAACTTATACATTAGTCCAATCGGATAAcgttttattatatatcataaaCCAGTCACATTCCAATAAATTAACGGCAAAAAAGTATTTGACAATggttaatttaattcaaacctAATaagaagataataataataataataatatgactGTTGAACTATAGTATCGCCCTTGATGTACCCGCTCTATGCACTTGTGCCTCTTTTGTATTTGATTTCCACTAAACCCACCCCCAAATAAACTTAAAACATCTGCATGTTCTCTACAGTAATCTTCATGTTATCAACACCGTAGTACAGTAATTTAGCACCATTTAGGGGGATTCACACCAATAAAAgttaaagtttaataaagttTAGTCATCGTTCTAATCGGGGCATCACATCGCAGCTATtatgacaaaaacatacagaatatatCATTGAAATTACTATCAAAACAATTTTTCCAGCGGTTAAAcgttcaaaaaatatttacagccaatcagaatctgCATGACATTAAAGAGCTTCAAATGGCAGCTGACATAGCTATAGCATGCTAACAGATAGCCCGTTGTTGTGGATGCTAATAGTTACCGGTGTGAAAGGGCCTATACTCTGCAGTAGTTTAATACTTTAACCAACTAAGttaaagcaatttttaattttcattcataatgTTTTGAACTGACTTGGCGACACAGCAGTTTAGACGATTATAGGTTGGAGgtaaaacatttctgaaggCGCTGTACTTAAAACACTCCTAACAAATTCACTGTTAGTCCTTTTTACATTGTCAGCCATCCCGTCTCAGCTAATGTAAGTATTGCGAACACATGATGGTGTTTCTGTGTACTTCTGTGAACCTCTCTCCATCCAAGTGCTCTTATATGCAAGTCTGCTTCTCACTGAACACgtacagaatgaaaaaagaacTTAACCtgtctgtaaataaaacaatgatcatttaatttcttattttaaggaATAAGCTTTAAGTGTTTATCGGCAtgatacaaaaatgtttaatgtgtgtgcTTTGTGTGATACAGTTATGCTGTATGGATCAGACTGGACAAAGGTTTTATTAGTTgtgcataaaaaacaaaaaagaaaaaaatgtttagtagaCTTTACTGTAGTATAAACTACTATCTGGTGgcagattattattaatttatgtacaCACTGTAGCTCTTCTgctcttcttttattttataagaacTGATACAGTTTGTGCTCATTTTATACAACACAAATGGCACCTTATCTGTGATGTTATTAGTGAGATTGAATCTCTGTTACATTCATTTACAATGTATGTGTTGCCATTAcatgttttctgttgttgtctACATATTcataatgtacttttttgttttatttaggttttataaTTGTATCCAACCAACCACATCCATTGAAATGCTGCCTATTAATTTTAAGTGTTAATAAACCTGATAGACACCTGTA

Function

GO:

id name namespace
GO:0048666 neuron development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10641 LRSAM1; E3 ubiquitin-protein ligase LRSAM1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49702 lncRNA upstream 142127 6980717 ~ 6981993 (+) False kank1b
TU49676 lncRNA upstream 193335 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 202481 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 427478 6617276 ~ 6696642 (+) False dab2ipb
TU49607 lncRNA upstream 629590 6491552 ~ 6494530 (+) False G33665
TU49863 lncRNA downstream 361 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 974 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 11127 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 13102 7147035 ~ 7147616 (+) True G33853
TU49878 lncRNA downstream 32675 7166608 ~ 7168142 (+) True G33857
XM_043238991.1 mRNA upstream 3158 7119341 ~ 7120962 (+) True pole3
XM_043240908.1 mRNA upstream 59033 7062979 ~ 7065087 (+) True zgc:55461
XM_043240928.1 mRNA upstream 64694 7052970 ~ 7059426 (+) False glipr2
XM_043239708.1 mRNA downstream 15225 7149158 ~ 7157235 (+) True ptpa
XM_043240193.1 mRNA downstream 143052 7276985 ~ 7280143 (+) False ntmt1
XM_043240194.1 mRNA downstream 143079 7277012 ~ 7280143 (+) True ntmt1
XM_043240209.1 mRNA downstream 152635 7286568 ~ 7300729 (+) True gpr107
XM_043240210.1 mRNA downstream 152657 7286590 ~ 7300729 (+) False gpr107
TU49701 other upstream 142127 6978548 ~ 6981993 (+) False kank1b
XR_006251122.1 other upstream 172391 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 172754 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 173362 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 173839 6950211 ~ 6950281 (+) True LOC122346219
XR_006251030.1 other downstream 152657 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 204535 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 204535 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 239973 7373906 ~ 7449497 (+) False LOC122345182
TU49933 other downstream 286207 7420140 ~ 7440775 (+) False G33891

Expression Profile