RNA id: XM_043238994.1


Basic Information

Item Value
RNA id XM_043238994.1
length 4419
RNA type mRNA
GC content 0.43
exon number 11
gene id mef2cb
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17686501 ~ 17755766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCAAGAGAGTTTGAGGGGCAGCACAACCCACATCGGGTTTCTGTTCAAAGCCAGCTGGTCTGGCTTTATTAATGCAGGGCATttcatttctgttcatttttaatttttttgtaatgactttgaattttttttgtaaccgtTTGATTAACCTGGCCCACAGCTGGAGCTGCAGGGTGTGACTTCCTGGGGAAGCACAAGAACGGCACCGGTGccaactaaacaaacaaaaccacactCTGAAACCTAAGAGGGTCTTCCTGGTAAAACGGCGTGCTGGAGCTGGAAGAACTGAGGCAATTGTGAACGCGGTACAGCTACTGGAATCTTTGAATTGAGCAGAGGAAGTCGAGACAAGAAAGCCTGgtttgaagaaaaagaaagcaaaaacagaGGGACGAAAGAATAAGTTCattggagaaaaagagagacgaAAAGACGGGGACAATGGGGAGGAAAAAGATTCAGATCACACGGATTATGGATGAACGTAACAGACAGGTGACGTTTACAAAGAGAAAGTTTGGCCTGATGAAGAAAGCCTATGAGCTGAGCGTGCTGTGTGACTGTGAGATTGCCCTCATCATCTTCAACAGTACTAACAAGCTGTTCCAGTACGCCAGCACAGATATGGACAAAGTGTTGCTCAAATACACTGAGTACAATGAGCCGCATGAGAGCAGGACCAACTCCGATATTGTTGAGACCCTGAGAAAGAAGGGTCTAAATGGCTGTGACAGCCCAGACCCCGACGCAGATGACTCGGTGGGCCACAGCCCAGAGTCAGAGGACAAGTTTCGTAAAATCAACGACGACATTGATCTGCACATGATCAGCAGACAGAGGATATGTGCTGTGCCCTCTTCCACCTACGAGATGCCCATCCCCGTGAATAACCAGATATACCCAGGCAATCATAACCTGCTTCCACTGGCTCACCATGGCCTGCAGAGAAACAGCATGTCACCCGGGGTCACACACAGACCACCTAGTGCAGGTGGTCTGATGGGCACTGATCTCTCCACTGGCGCAGGCACCAGTGCTGGTAAGGACGGCATCCCCACATACTACAGAAATGGATATGGAAACCACCGTAACTCTCCGGGACTTCTGGTGTCCTCCGGAGGCATGAACAAGAGCATGCAGGCCAAGTCCCCTCCACCGGTGAACCTGGGGATGAACAGCCGTAAACCTGACCTACGAGTTCTCATCCCACCCGGGGCCAAGAACAACATGCCCTCTATTAATCAGAGAATAAACAACTCTCAGTCCGCACAGTCACTGGCGACCCCTGTGGTTTCTGTAGCGACCCCTACTCTACCGGGACAGGGAATGGGCGGCTACCCATCAGCCATTTCCACCTCATATGGTACTGAATATTCTCTGAGCAGTGCGGACCTGTCCTCGATATCCGGCTTCAACAGCGCCAACACTCTGCATCTGGGTTCAATGAGTGGATGGCAGCAGCATCAGATCCAGAACATGCAGCACTCTGCTCTCAGTCAGCTGGGAAATTGCTCTAGCACTCACTTATGTCAGGGTTCAAATCTGTCCCTGCCCTCTACTCAAAGCCTGCACATCAAGTCCGAACCTGTTTCTCCTCCTAGAGATCGATCCAGCAGCACCACGCCCGGCGGCTACGGCCCGCTGCCGTCCCACCAGCAGCACCAGGGCCCGCCCCCGCAGGGGCGACAGGACTCGGGCCGCTCCCCGGCCGACAGCCTCAGCAGCTGCGGCAGCTCGCATGACGGCAGCGACCGCGACGACCACCGTCCCGACTTCCATTCGCCGTTAGGATTGGGTCGGCCCGGCCTGGACGAGCAAGACAGCCCATCCGTCAAGCGCGTCCGCCTCTCGGAGGGGTGGGCCACATGAtaagcctaagcctaagccCCCCTTGTGGACAGCCCCGTCCTCGATCTCGACCTCCCCATGCGAAGCGGCTCGCGCGCTAATCATTGCTCTCCCTTGTTCTCTGATTTGCTGTAGAGAGGGGGAGGAAGTGCTCTCGAAAttacctgtatttttttttattattattattattattattattattttatcagagTGTGTCTGATATACATATTGTTGTGATTGACTGGGTTTTCAGGGAGGGAAGCGGGAAGGAGGACTGATACGCCGGGGTTGGGGAGGGTTTATTGGGTGGGGTTACTATGCATAACTTGTGCAGTGTGTGGAATACAATGTAAAGAATTaccatatatgcatatatatttacacgTTGTGTAGGTGTACATGTATGCAGAGtaacaaaccaacaaaaagtGTCAGGTACTCTTggatcttcttcttcttcttcttttttttttttttttttttttacatgcctCAGTGGCGTTCAGCCACGAGAGGAGCACAGCAGAGAGCGTATCGCGGAGGTGACAGCTTAGCACTTGAGTTGTTGTAACCAGTACAAAATGTAcagattcctttttttttttttttttttttttttagcgccATTCGCTAAATGTATGTTATGGGTGACAATGTCATGTTGCAGGTTCAACGTTATTGTACATAGAGAAAAGGCTGGGACACGGGGGAAGGGTCAAGGTTGCTGATTTCTCACGAACATAACTGTTATGCAAGAATTTCGAAGGATTGTACAGATATATGTGCAGGTTCTTTGGTTAAGTTATGGGGGAGTGGgtatttcatgaaaaaaaaatcaaaaataactaattaaaaaaaaaaaaaaaaaaaaactctcctGCTGAAGGAAAGGAAATAGCGGGACGGAGATGAAGGACTTTAAATTAAGAGCCATGTTACTTCAGACATTTTAACCTAGGATTTGCAGTTGTTGTTCAgtattaaaagaagaaaaagagaaaaaaaaaattgtatgatACACTTGCTTATATTTTCATATCAAAAAGGAATACAATGCAAAGCatttttgtggctttttgtAGTTTATAAGAGCCAGAATGTGTTTTGATAGCTTTGCTTATATGAGAAACGATAGTAAAAGGATGAGAAACCTTGGGCTTTTCAAACCGTAAGCCATGACAGTGAACCCTTGCTTtgctcaatgttttttttgtttttttttcttttctctctctctctctctctttctctctctttgtagaagttttgtttttaaacgtgTATTTCTAAgtatattgaataataatattaagaatctttttaaaaaaaaaaatctgtgaaattaACATGCTTGTGTATAGCTTtctaatatatgaatatatatgataaaaaaaaaaaaattatggtcATAACGTTTTCCCCGTTGCGGGGATGTGCAGTTGCACACGTTTAATCGTCTTTCTTTCccccttctttttttcccttccacCGGACTGAGTCTTTCAGGGGCAAATGCGTTCAAAACGATGCTTTCAAATTGAAGTCGCACTCATAAATATGCCCCCcccctttttttaataagcacAAGGTATCCACTTTGCTCTGGAATACTCACAACCTTTCCAGTGTCACATTAATGGACATTGCACTGAAGATTTTATAATATAAGACAGCACAGTCATAGATACCTCATGACTGCTCGTGTAAGCTTGCATCATCATTTAGTAGATTGTGACTAGTTTTGTTCAattgatatatacatatctatcaTTGTGCATTCTGTGATTTTGACAGGACATATGTTAGTCTGTTTTTTCTACCAAAGACAAAAAGTGATGTTTCGTTTGCCGATCCATTCTCCTTTCTGGGTTTGAGACCATTGTGTTTCTTCACAAGTTGTTCATGCTAGTGGCTGGTACCTCTGACTCACCCTCCCAGTGCCTCAGATTACCTTTCAATGAGTTGGTCTTGTTGAGAATTGGGAACATTCTCCTCTAACTAACAAGTGTACAGTATTGTGAAAAATGCCATTGTTTGTTATATAGATTTCAATTGTCCATATATGACTCTCcggttgttttctttctttttttgttatttttttgttgttttttttggttgacctttttgtttctctctcactatctctctctctctctctctctctctctctctctctctctctctctctctctcgagtgTTGTTTCcattaagtatataaataacaaaataaaaatgaaaaaaaaaaaaatgctgaaaaattctGTAGTAACAAATGTAGCTTGTATAAACCTACAATGGGTAAGGTTGAaagaaagtgtcttttttttgttttctaaccAGGAGAAAGAGGCTTTCAGCGGCACAAGCTGGACTTTGTCGCCACTTGAAGACAAGATGTCATTAAATTAAACCACATCTCTGTATCTCAAGGGACTTGATTCAGCTGTATGTAGTAAAAATTAATGTATGGAATAAAAATTGTTTCTCCTGCTGGGactaaaaaaaaggtatttgtaTTTTGCAGAGAATTCAGTAAAGTTACTGGCTTTCTTAGTTACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060914 heart formation biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250975.1 lncRNA downstream 477 17646096 ~ 17686024 (-) False LOC122345155
TU55246 lncRNA downstream 491 17646099 ~ 17686010 (-) False LOC122345155
TU55242 lncRNA downstream 1706 17646099 ~ 17684795 (-) True LOC122345155
XR_006250974.1 lncRNA downstream 1728 17646096 ~ 17684773 (-) False LOC122345155
TU55241 lncRNA downstream 6851 17646099 ~ 17679650 (-) False LOC122345155
TU55259 lncRNA upstream 136191 17891957 ~ 17893318 (-) True G37439
TU55274 lncRNA upstream 190781 17946547 ~ 17946764 (-) True G37453
TU55276 lncRNA upstream 198734 17954500 ~ 17954747 (-) True G37455
TU55277 lncRNA upstream 199785 17955551 ~ 17955769 (-) True G37456
TU55279 lncRNA upstream 206077 17961843 ~ 17962070 (-) True G37458
XM_043239832.1 mRNA downstream 54339 17616213 ~ 17632162 (-) False tmem161b
XM_043239831.1 mRNA downstream 54422 17616213 ~ 17632079 (-) True tmem161b
XM_043239051.1 mRNA downstream 94144 17586823 ~ 17592357 (-) False ccnh
XM_043239049.1 mRNA downstream 95054 17586823 ~ 17591447 (-) True ccnh
XM_043239050.1 mRNA downstream 95079 17586823 ~ 17591422 (-) False ccnh
XM_043240158.1 mRNA upstream 137742 17893508 ~ 17895933 (-) True mblac2
XM_043240157.1 mRNA upstream 143998 17899764 ~ 17904335 (-) True lysmd3
XM_043240294.1 mRNA upstream 271455 18027221 ~ 18034972 (-) True arrdc3a
XM_043238311.1 mRNA upstream 281821 18037587 ~ 18042062 (-) True LOC122344755
XM_043240295.1 mRNA upstream 287748 18043514 ~ 18046387 (-) True LOC122345814
TU54999 other downstream 973334 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 973334 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1053380 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1308006 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1429762 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 2111620 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 2111620 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 2113048 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2295893 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2369823 20125589 ~ 20127390 (-) True G38140

Expression Profile