RNA id: XM_043239065.1


Basic Information

Item Value
RNA id XM_043239065.1
length 4106
RNA type mRNA
GC content 0.36
exon number 3
gene id hspb15
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7355694 ~ 7360060 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCAGGATGGCATCATTCTGTTTATGTCAGGTTGTAACAAGGGGGTGAAAGATTTGCCAAGCCTCTTTGTTGACATTCGGGACTGGATAACTGGGTAATTTGGTGTAAAGGTTTAATCGACAAGGACCGTATAAAAGAAGTGAGTGGTAACTTTCAGTAGCGTTTCGCAAGTTAGGAAATCAAATTTCCTGTTACTGCATCAGCATCAGGTATTGGAAGCTCCAAAACAAAGTGTCTTTCAAATTGTTTGAAGATGCCTCGTCCTTTATTTCAAAGAAGCTGTTGCTGGGACCCTTTTCAGGAGAAGACACAAAACCTTTTCAACCAAAACACAGACCTTCCCGGTTTCCTCAGACCCGAAGAGGTTAGCTGGATCGAATCGGCAAGGAAAAGATTAGGAACTTCAACCGGGCCAGAATCTGTACCTATCTTCAGCCATTTGTGCATGGAGATTCCACCTAAATCATGTACTGGATCAGAAGGACACGTTTCTGAAACTTTGTGTGAACAAATGGGACAGCAAAACTGGAAAATATGTTTAGATGTCAGTCCATTTTCTCCAGATGAGATAAACATCAAAACCAATGAGGGATATTTGGAGATaacaggtAATCACGAAGAAAGGCAGGAAAATCACCGGCTGATCTCTAGAAgctttacaagaaaatacaaGCTTCCAGCTGACTTAGACCTAAAACAGATCAGCTCCAAGCTGTCCCCAGATGGTGTTCTCTCAGTTGAGGCCCCATTACCTGGCTCTAATGTCAGTCTCCCTGGAGAGACTGTCATCCCTATTCACATGATGGACAAACAGTTACCTGCAAAATCAGATGAACTATGCCTAACCAGTAACAAGTAAATGTGTACAGGTTAGGCTTAGCCCATCTGATTtcatatgtacagtatgtgtatatgtgtgttgaAAGGATTGAGTGTTTTCCTAACCTTTTGTTGTTAACCtaatttacacaaataaatgctgatcaCACAGCAGTGGAGTAATGCTTCAGGTCACATCCTCTAGATGGTGCTGGTATTTCAAGCTGTAGAGCTGACACCAGATTCGCTGTGCTTTTAACTTCACTCTAACACACTGCTTGTGTGACAGATCATGATACAGTCACTTATGAAACCCAAAGCCTTCCTCCATTGGTTTCCTTCTTGGGGTGTTCAGAAGTATGGAGGCAGGTTTCTCCTTAGCTCCACACTTTTACCTTGACTATTTCTGTATGTGTTACACAGCTTTCATCACATTACTCTGGAGGGAGTCATCAAATGACATGTCTATGCATGGTAAAAAAAGCAGCAATGTGTTTTCAAATACTCAGTATTTCCATTGTTCCATCACTTTTGTATGATTTCATTATATCTGACATATAAGCTGGTACTGAGGAGTTTTTTTAGCATccttaaaatactaaaatgcttCAAATGCTGTCAAAATGTGTGCTGCTGACAGTTAATCAAGCATTTGCCTATACATCTCTCATCTGGATTTGTTGCTTATAGGGCATGAAACAGCTTCATCTGTCATTCCAGCAATTTTTCAAAGGATCAGTATGTGCTCATAACGATTTTCATTACAGGAAAACACAGTTAAGTGGAGAATACAGCTATAAAAAACCTGACAgtaaggatttatttatttcctggCTCAATTATGACTTAATGTATCAACACGTTACTTTACAGAGTCTGAGACTATTAAAATTCTTATGATGATTGCTGTTAGTACATGGCAGATGAAATGAAGAGCTGGAACTAGGCTTGTAAATATACACCACATAACACCGGGTCACCATCGTTTAACTTTGTGCACACATGGTGGACATGCCAAAAATACAGCCAAGGGAGGCTCCTCTTACATGACAAGTCTTAAGTTATTCAGAAGGAAAGAGGGTGTTGAAATAGTGAGAATGCCAAGGAGCTCTGCAGGGGCTGCTTTCTACCGTCTGTGGTATGAGCATCTGTAATGAGTGAATGAGGATTTATGACacaataaaagtttggtttgtCAACATGTTCACAATTCAGTGTTACATGCATAAAGTAGATATATGAACATATCTGTTAATCACGTTTAGGgctttttagttgttgtttttttgtgtgaactttCACTTGGTATACTTTATATATgttcaggaaaaaaacaacaactaaacaaacacaaaaaaaaaggttaaaagtgttttgttcatgttcatgttttctATAGAATAGTATTCCCTGGACTGTAGCATATAAATGACCTTGAATGAATTTTGCTCTTGACCAAGATTGTTTATGACATTAAGGGATTTCCCATGATCATCTCTGTTTgaagtaaataatacaattgtCCTTTATACCaagtaaagttttattttggctaATGTTTAATTTGGTTAATTTTTGCTTATGtctcttttattcatttattacaacCCTAACCTACTTAAAGCTATGCATGCTGAGAATGTGCAGGGCTCAGGGCTACACTCATTTGCCCTGCTGTAAAAAATCTGACAAATGTTATTCTAGTGTTGGTGTCAGTTTTTGAGTGAATgaagccataaaaaaaaaagagttacacATATGTTTAAGGGGGATGTATGGTGATATTACAATAGTCTTAATATCCAATATAACACATGAGAAAACACTTAAGCCCAAGTTGATTTTTTGGCGCATAATTGGAGAGcatattttaagcatatttcaaaaaacagtaatgttatttgttttaaacaaaccgTTTAATCAAAACggttgttaaaaatgttttaaattgataaaacggttaaaaaggcatttgtacACTACGGTTGTGAAATGTTAACGGAACATAGATAATGTTATAAGCTAAACCCGCAATTAACTGTAATTGGTTGTAAATCATTATAAAGAATGTGCCAGAAAAGTGAGAAATTGTCTAACtagcataatttttttgtacatgtgaaactttatttgatattatttctAATGCAATGGAATTTATACACAAAGTAACTTGCATGTCCATCTGAAACAGAATGCTTTTTCAGGGCCAATATATGTGCCAAGTgcaatttaatgcttttaaacgtATTACACAAACCAAAGTTTGACACTCCCCACATAACACTGTCAACATATCTTTCTTTGCTAAATAAAGTGCATGTAAAATATCTcaaactaattaatattaagaCAATATATTTCCATACCCAGTTCTAAAACAACACTCAGGAAAAATAGCATTTActtaagagattttttttaaatataacaaatacttATCTTGAAGTAGGAAACACAATATCCAGTGGTGATGTTGCTGCATAGTGATAACAAAGTCTAGCAGTTCTACATATGTCTCCTTGACATTTAACAGTTACATTAAATAAGAACTAATCCATGTGCGACTAAGACAGTCTTGTTTTTAGAGTCACTGGTGTATCATAGTACATCTGTTGACATTCCATGCATATTTTGAGGCAGTATTGAATGTCATCAAAATTAATTAGTTACATAAATGAAACTGATTTATCCAACAGAAGTATCATATATACTGAAACTTTACATTCATGTGTATCTAAACTTcacagacaaaacaataaaacacaagtaCAATATTTATAATCTAGTggaaatatgcacatatatatatgcagtacaGTAAGTTGTTTCCATTTTTAGAATGATTGTCAGTGGCAAGTGTTTCACCTGATCAATTCCTTTGACTCCCATTTGTGCCATATTAGACATTAGTTAGCCATATTTAACTTTGCTTGGCTGGCAGAACATATCCAATATAAGGCAGTATGGACAAGCCCTGAAGACTGTTCAGGAGACAGCTCTGTTCGTGATTGTGGTGAGAACTCTAATTTCTTCAAGGATTACAGTTTGTCATTGGTTGTAACAAATACACTTACAACAAATGATTAGACGAAAATGGAGACATTCCCGTTcaagttttttcatttataataattacatcaATATACgtgacatattaaaaaatatcacaaatatgTGGTACGATGTAGCTAATGGAGAAATTTGAGTACAGAAAAGTCACCTGAATTTTAAATCTATTACAGGGCTGCTGGAATAACATCACTACTgggaagggaaaaaa

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49903 lncRNA upstream 11616 7343209 ~ 7344078 (+) False G33878
TU49919 lncRNA upstream 21916 7333469 ~ 7333778 (+) True G33888
TU49918 lncRNA upstream 26075 7329347 ~ 7329619 (+) True G33887
XR_006250915.1 lncRNA upstream 114984 7222397 ~ 7240710 (+) True LOC122344649
TU49945 lncRNA downstream 60080 7420140 ~ 7440356 (+) False G33891
TU49935 lncRNA downstream 61744 7421804 ~ 7443225 (+) True G33891
TU49936 lncRNA downstream 61744 7421804 ~ 7443225 (+) False G33891
TU49944 lncRNA downstream 62307 7422367 ~ 7443225 (+) False G33891
TU49931 lncRNA downstream 62835 7422895 ~ 7443225 (+) False G33891
XM_043239063.1 mRNA upstream 459 7345990 ~ 7355235 (+) True dab2
XM_043239064.1 mRNA upstream 459 7345990 ~ 7355235 (+) False dab2
XM_043240724.1 mRNA upstream 19147 7334377 ~ 7336547 (+) True gas1b
XM_043240174.1 mRNA upstream 29665 7320999 ~ 7326029 (+) True fbxw2
XM_043240525.1 mRNA upstream 37046 7304216 ~ 7318648 (+) True ncs1a
XM_043239058.1 mRNA downstream 219 7360279 ~ 7370368 (+) True LOC122345181
XM_043239059.1 mRNA downstream 219 7360279 ~ 7370368 (+) False LOC122345181
XM_043239061.1 mRNA downstream 13548 7373608 ~ 7398735 (+) False LOC122345182
XM_043239062.1 mRNA downstream 13548 7373608 ~ 7384157 (+) True LOC122345182
XM_043239060.1 mRNA downstream 28414 7388474 ~ 7398735 (+) False LOC122345182
TU49900 other upstream 11616 7338468 ~ 7344078 (+) True G33878
TU49901 other upstream 11616 7338468 ~ 7344078 (+) False G33878
XR_006251030.1 other upstream 55883 7286590 ~ 7299811 (+) False gpr107
TU49701 other upstream 373701 6978548 ~ 6981993 (+) False kank1b
XR_006251122.1 other upstream 403965 6951658 ~ 6951729 (+) True LOC122346227
TU49954 other downstream 13846 7373906 ~ 7449497 (+) False LOC122345182
TU49933 other downstream 60080 7420140 ~ 7440775 (+) False G33891
TU49922 other downstream 65645 7425705 ~ 7446216 (+) False G33890
TU49927 other downstream 66197 7426257 ~ 7446216 (+) False G33890
TU49925 other downstream 66921 7426981 ~ 7446216 (+) False G33890

Expression Profile