RNA id: XM_043239171.1


Basic Information

Item Value
RNA id XM_043239171.1
length 6240
RNA type mRNA
GC content 0.53
exon number 35
gene id arhgef28a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6105795 ~ 6162485 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCTTTGAAGAGCTCGAGCACCGGCGGCGCATCCGTAACCCGTGTGTCCATTCAAAACAGTCGGCGTCGCGCGAGCGCGAGTCACGCACACGGACGTACGGGCAGGACACAAGCGCTTTCAAAAGCCTCGCTTTCGGAAGTTGAAGGTTTTAGACTCGCATGGAGTGAGGTGCTGTCGCTGTAATGGAGCTCAGCAGCGGAGAGGTGCCGCTTTACGGTCAGGTGGAGGTCCGTGCGAAGCTGCAGGTGTCTTCGAGGGTTCAGGAAGAAGCTGACTACTATGTGGTTCTTGTGGGCTCGTCCCTTCACCACGTAACCACCGCTCACAGGGCGGAGGATGAAGGCTCGATTAAATTCACTGTGCCTGGCCACGATGTTCCAGAGAAAGTGTCTGTGGAGGTCTACTGCTGTTCGAGGGACGGCACGGGTCCCATGAGCCTCCTCTGCGATTCAGGACCGCTGTCTCTGGAGTACGTACGGGACAAGGCCCAAGAGCTGGCGGAGCAGCTCATGAACTTGACGTCCAGCAGCTATCAGGATATCTTAAGGAAATTCTGCCcagagaaaatgttttcatctGAGACTAACCATCTAGACCAGACTGGCCGGCATGGGACAGACGGGGTTTGTGATCCAAGGGAATTATTTCGATTGGAAAGCCTAGCAGAACAGGGGCTCAATATTTGTGAACAGGGAAATTTCAGCCAGAGAGAAGCCCCAGGAACATCAGAATTTAACGGAGAGCACAGATGCACGGCGGTTGATGAAAAAATCACACGGGCCCTGGCTAACTTGCACTTTCTGGGCTGGGACAGCCGGGCCGGACAGGATAAGCAAGATCTCCTTTCCAGGGAAACGCCTCTACATGTTGCCATACATATGGGGCTCCCCCACCTCAGTCACTTCCTCCTCCTGGAGTCTGAAGGTCAGAGGATGGTTCCCGTAGTCGACCGAGAAGGCCATAGCCCTCTCACGCTGGCTCAGAAGCACGGAGACCCGACCATCATCAGCGCTCTGACAGATCCCTCGAGTTGCAGTGCGTGGAGGCCGGTGTGGATGTGTCAGATGTGGACGGACGGCTCTCGCCAGCTTCGTATCTGCCCCGTCACCGAAGCTGTTAGTCTGACCGCGAAGAACGGCACACAGATAGATGCACAGCACAGTATCCAGCTGTACAGGGAGAAGAGCGGAGAGACAGATGCACTCGCGAGGGTGGGGCAACCGAGTGAGCCGTCAGAAGAGAGCACACACAGATCCGATGTATGTGACGCAGATTCGAACGGCCAACTGAGAATCGAGGATGAAGCCCTGGTGGACAGTGTCTTTGAAGAACAGCTTGTTCTCTGTCTGGATGAAGAGGATGAAGATCTAAACACATTTAACTCAGaGAAGCTGTGCTCCTCTCCTGGCTCCTGCACTCCATTTCACCTTCATTCCTCAGACGCCGCTGCCGTCAGGCTCACAGCCATGCTCAGAGGCTCCGCTAAGGACAATGACCTCAATATGAAGTACGCTGTTTCAGGCGTCACGGAGGACAGCTCTGGGACAGATAGCGGTGTGTGGCGAATGTCAGATACAGGGGTCTTGTCACCAGGGACTGTAGATATGCCTCCAGCTGTTAAAGATCATGAAGTGCAGAGAGTACGGCAACACgcttctcattctttctctcccACCTCTCCTGCGGGACTGATGCTGGATAGACTCCTGCGTGCCACACGACCTGCTGAGTTGGCATATAACAGCTCTAGCTCACCTACAGAGTCATGTGACCTAAGAAGTCCAATCCTCTCTCTAAGCCCGAGTTTGGTGGCCTTGGAAATGGACAgcgaggaggatgatgatgatgacattttaatgaagaAGCCCCTTCCCCAGCTGCATCCTGAGCTCAAAAACAGCGCAGATGATCGGATTCTGTTTAGGCCCGCCCCTGATCTTACCTGCACGCGTTCTCACTCCGCCTCCTCCGCCTGTAACCCCACCCCTGCAAAGgaTATTGAGCAGGGCATCCGTCTTCGTTCATATTCCTACACCTCCCCCAAAATCAGCCTGCTGCCTCCACGATTCAGTAGGGACGCCCACCCTCCACCCACCGACCTCAACCAGGATGGCGCCCTCTCCAGCAGCAGTGGCAGCAGGTCTCTCCTACAGGCACTGTCTCTGTCTAAATCTCTGTCTCTGCTCAACCCTGTTAAACACCGTGCCTGCAGCACATCAGAGCAGCCTCAAGAAAAAAGGATTGAGGAAGAGGAATGGGACAAATATATCATCCCTTCCAAAACAGAGTCAGAAAAATACAAAGTCAGCCGCACATTCAGCTTTATAAAGAGCCGAATGTACAGCACTCGCAACAAGAGCAAGGggaaaggaaaagagagagagaccaaaGAGAAGCAGGTCAACGGACACCAGTTCACAGCGGGATCTGTCCTGGGGTCAACGCTCTGTGAGATCTGCGGCAAGCCAGCTTCAGGGAAAGAGGTCCTCCACTGCACACACTGTGCAGTGAGTGTCCATAAGGGCTGTAAAGATTCTTCTACGCCATGCCTGAAGAAACCCCAAGATAAATATTCTGTGACAGTAAAAAGCAGGACAGCCTCCCTCCCTCAGAattttatagtgCGTGAAAGTTCCTCCTCGTCCTCTCAGATCCCCGCCTCCGCCTCACTTCCTGTGATGACATCACGAGACTCTACTCCTCTTCCTTGCTCACTGTCTAAAAGTGTGCCTTCGGTCACAGAAAGGCTTAGTTGTAGCCCAGAAGCAGATAGCGAGGCCCCCCCCTGGAGGAACCACATCCAACCAGAGGAGGTCCTCCAAACCATGGAGTCCTCAACATCCACTGATTCCTCCCTTATAGAAGACTCTGTAGATTGCCCCCTACAGAATGAGCTGGTAATGAATGCCGTGGATTTGGAGGCAGAGTCATGGAGCCTAGCGGTGGAGCCCCAGTTCTGCAAGATGCAAGAAAAACGCATCATCAAGAGACAGGATGTCATTTACGAGCTCATGCAGACCGAGCTCCACCACGTTCAGACGCTCATGATAATGGCGGAGGTCTTCAGGCGGGGAATGCGGGAGGAAGTCGGGCTGGATGTGGACACTATCGGTCGGATTTTCCCTTGCTTAGATGAACTGCTTCTTCTCCATCGTGACTTCCTCTCATCGATGAGGGAACGTCGGCAAAGCTGCGTTCAGTCCAGCAGCAGCAAGAACTACCTCATCCACCGTGTGGGTGACATTTTTCTGCAGCAGTTTTCCCAGGAGAATGCAGAGAAGATGAAGCAGTTGTATGGCGAGTTTTGCAGCCGTCACACAGAAGCGGTCAGCTACTTCAAAGAGCTTCAGCAGCAGAATAAGAGATTTCAGCTCTTTATCAAACAACAGAGTAGCAACTCGCTGGTAAAGAGGCGAgaaatcccagaatgcattttattagtgACGCAGCGAATTACAAAGTATCCCGTCCTCCTGGAGAGAATACTGCATTATACAGAGGAGGGCACAGAAGAGCATGCTGACCTGTCTCGTGCGCTAGTCCTGATCCGAGAGCTGATCTCCGCTGTGGACCAGAGCGTGAGTCAGTACGAGCAGAACCAGAAGCTGAGTGAGGTCCTGGGTCGCATGGAGAACAAGTGCTCGACTAAACTCAAGAGCGGTTACACCTTCCGCAAGCAGGACATCACCAGTGGCAGGGCTCTGCTGCACCAGGGTCCACTGCTCTGGAAGACGGCCACAGGAAGACTTAAAGATGTCCTGGCATTTTTGCTGTCTGATTCATTGGTGTTCCTTCAGGAGAAAGATCAGAAATACATCTTTGCTGCTGTGGACCAGAAGCCTCCGGTGATCTCGCTCCAGAAGCTGATCGTGCGTGAGGTGGCCAATGAGGAGAGAGGCATGTTTCTGATCAGCGCGTCTTCAGCTGGGCCTGAGATGTATGAGGTGCACGCAGCCTCTAAAGATGAACGCAATGCTTGGATGAGACTCATCAGAGAGGCTGTGGAGAGTTGCCCTGAAGAGGAGGATGAAACTACAAGTGAGTCAGAAGAGGAAAGAAGAGTCACGGAAGCAAAGGTCCAAAAGATCCACAGGCTACAAGAGTCTTTGTGTGGCCACGATCACCTCATCTGTGCCAATCTGGAGGAGAAGCTACACATCTATGCCGAGCTTTCAGTCATGGCAGGACGACGTGAGACAGGTCCAGAGCCCAGACTGCTGGTACGGCCCAGCACCGAAGACATCCCTCAGGCCGGAGTATTGCTCAGTGCTGCTCTTAAAGAGGCGGAGAACCTGAAAGCAGCGCTCTCTTCTTCTTGTGCTACTACTGCCGCTGTCCTGTCTTGTCCAGAAGAGCAGACCCAACCCGAGCCTTGCTCTCCATCCTCCCCTCTGCCCCCAGAAAACCAGAGTCCACTGATGGACACCCTCCTGAGGGATGAGGACGagtggagaggagaggaaagcTTAGAAACCCAGGCCTTTAATCACAGCTCAGACACTGATCACAATATACACCTAAAGGTGAGTCAGAGTGTGCAGAGTTTGACTCAGCTGCTGTACAGTCTACAGGCAGCAGTCACCATCCAAGACAGTTACTATGAAGTCCAGAGGCTCCTCCTCCTGCTATCAAGCCCCTCCCCTCACCCACATTCCCGCCCACTGCCCATCACTCGCAGCAGCCAGACCCTGCAGGAGCAGGAGCGCCAGCGGGAGGCGGAGCGCCGGCGGGAGGAGCTGGCAGACGTGGTCCGTCTACGGGGCACCCTGGTACGAGAGCGACAGCAGTGGGAACGGGAGTGCCAGGTGCGACAGCTTCAACAGTCTGAGCTGGAGGCGTCCCTGGAGCAGAGAGAGCTGGTGTGCCACCTAGAGGAGCGGAGGCTGCAGAGCGAGCGACAGGAGCTCCAAGAGCAGCTGCAGGAGTACCAGCAAAGCCTGGAGAGGCTCCGAGAAGGCCAGAGGAGCgtggagaaggagaaggagaagctGGATGCTCAGCGGAGGCTGCTGGAGAGTTTAAAGCAGGGCTACCAGCAGAACCTGCCAGCTATGGTCATACCATTGGATGGACAGCAGACACAGGACGCGGGTCACCATCACCTGAGCGGTCAGGATGAGCACGGATCTATTTTTGTGAACGAGGCAGCATTCACGTCTCCCTCCCTGAACAACAGGAACATCCACCTTCAGCATCATCCACACCGCCTTCATCAGACTGTCCACCTGCACTCAGGATACTCGGATTCTCCCAGCGCTCAGAACAGTCTCAATTCACTCCTGGCTCGATCCAACCACAGACAGAGCTCTGCTGGAGTATCCGATGCTCCTGCAGGAcacgagagctggactgaagGAACAATGTGCTCGACCCCTCTGAGAAGCCTAACAGAGATCCCAAACAATGATGTGGGTCAGCTCGGCCATGTCCAAGAACCTTGGTCAGCTGGCGTAACTGGGGCGGGGCTTCATCAAGCAGACGTCCTGCTCGTCAACCAGCCCTTTGTTACCATGGAGACAGAGAACAGAGATACTGATGGAGAGGAGAATATTGTGTATCTCTGAAATGAACGGTCTTCGGTTGGTGTCGAAGCAAAACATTTGGACTTGGATTTGCAGTTTGAGATTTTGGACCGTGATCTGATCCCACtccttattttgtgttttttcttgctTCTTCCTTTAATCCCAGCAAACTTTCGGCCTTCTGTGACATTCTCCAGACTTCGTAGCACTTCATAGGTCCGTGTGTGAGATGGGGCTTGTCTGAGTGGCTGTATTTTGCTTTATAGCCTGGAGCCTGCAATGACAGAATCAGGTTAGGCAGTTTCAGCACAcgttcagacacacacataaaagtCCCCCACCCACATTGCCgcacaatgtatttttctcCAACTGTCCATGTCAGTTTACATCAGGACGCAAAAATACTGACCCTTGCTTTCAGTAGATGAACGCTGACTTGatttataaaagcattcatCGCCTACATGTTTGCGTGTAAAAGTAAGGAATCGCCTTTCAGATTCTCTCACATTTGGAAACTGGTTTCACATATCCATATGAAGGAGAAGGTATAATATGTGTCGTGCTTTACTCTTCTGAAACATTTCAGATTCATTGGTGCTCATGAGCCACGTGtaaatcacgattaatcacatccaaaataagtttttgtttgtgtgtgtgcgcgtgtatatttattatgtatatataatatacacccatgcatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49349 lncRNA upstream 26373 6079083 ~ 6079423 (+) True G33492
TU49303 lncRNA upstream 208430 5863332 ~ 5897366 (+) True G33471
TU49270 lncRNA upstream 225267 5859290 ~ 5880529 (+) False G33453
TU49281 lncRNA upstream 235286 5817420 ~ 5870510 (+) True G33454
TU49366 lncRNA downstream 2920 6165405 ~ 6165623 (+) True G33500
TU49367 lncRNA downstream 3930 6166415 ~ 6166704 (+) True G33501
TU49368 lncRNA downstream 4249 6166734 ~ 6167250 (+) True G33502
TU49369 lncRNA downstream 4878 6167363 ~ 6167586 (+) True G33503
TU49371 lncRNA downstream 11365 6173850 ~ 6174177 (+) True G33505
XM_043239786.1 mRNA upstream 9780 6092249 ~ 6096016 (+) True btf3
XM_043239785.1 mRNA upstream 11057 6092247 ~ 6094739 (+) False btf3
XM_043238336.1 mRNA upstream 73164 6029626 ~ 6032632 (+) True tmem174
XM_043240416.1 mRNA upstream 85956 5983152 ~ 6019840 (+) False fcho2
XM_043239280.1 mRNA downstream 85310 6247795 ~ 6255340 (+) True hexb
XM_043239281.1 mRNA downstream 85312 6247797 ~ 6255340 (+) False hexb
XM_043238155.1 mRNA downstream 360051 6522536 ~ 6591580 (+) True fibcd1b
XM_043238156.1 mRNA downstream 360055 6522540 ~ 6591580 (+) False fibcd1b
XM_043238523.1 mRNA downstream 476762 6639247 ~ 6648360 (+) True zgc:63972
TU49351 other upstream 17234 6087262 ~ 6088562 (+) True G33494
XR_006251052.1 other upstream 127212 5959835 ~ 5978584 (+) False tnpo1
TU49128 other upstream 455911 5604333 ~ 5649885 (+) False G33355
XR_006250986.1 other downstream 85310 6247795 ~ 6254646 (+) False hexb
TU49600 other downstream 310862 6473347 ~ 6474191 (+) True G33664
XR_006251060.1 other downstream 630880 6793365 ~ 6824304 (+) False si:dkey-34e4.1
XR_006251059.1 other downstream 630880 6793365 ~ 6824158 (+) True si:dkey-34e4.1
XR_006251123.1 other downstream 787414 6949899 ~ 6949965 (+) True LOC122346228

Expression Profile