RNA id: XM_043239192.1


Basic Information

Item Value
RNA id XM_043239192.1
length 1140
RNA type mRNA
GC content 0.40
exon number 4
gene id c5h9orf85
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10273023 ~ 10275197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTATTATACATTTGTTGAGCGAACGAGAATTAAATATTAGAGCTCACTACCTTTAACGTCAGGTGTGTTTTGTGAAGTTGGAAATCTTTCGTTTGGAGTTGAAAAGCATTAGCCAATTGCTATTTACTTCCGCTATTTTCGCATTGCGTCAATGTTCTCTTTAACGTGTGAAGCCACGCGGTTTCTCATTTAGGCGTTTTAAACGGTTACTACGTGTATATATTACGTATACTTTGGGGTAAAATGAGTTCTCAAAAAGGAAACGTTTCCCGGTCGCGAGGCCAAAAACACCAGAATGTAACCGCCTTCAAAAATGACAAGTACGGTGCAAGCGCACAAGTTAAGAAAGCCAAATCAAAGATTCACGATAGTCTGTGCCAGCGCTGCAAAGATGTGCTAGAGTGGAAAgtcaaatacaataaatacaagaCCCTTACACAGCCGCGAAAATGTGTAAAGTGTCTTCAGAAAACGGTGAGGGACGCCTATCATATCATATGCAAGCCATGTGCGCTAAAGCTGGAGCTTTGTGCAAAATGTGGGAATAAGGAAGAGATTGTCATCCCgctTGACaagaaggaagaagaagaggtaGAGGGCACCAGCCAGCCAAGTAAAGGAacgagacagaaaaaaagagaaaagaaggaGGAGGACGACAACGACGACAATGAAGATTTTGATGATATGGGCTTTAGCAATGATGACTGTGATAGTGATTCAGAAGTGGAaggaaattaacattttaaagtcttCTGTATGCATTACCAGCAAACAGCTAAACTTAAGAACAGTGTCTCCAAGGAAGACTGGGGTTGGATACTGGACATGTAATCACCTGTTCACCCGCTGTTAATTGGGAAAGACTCCCAggaggtgtttttttgtttccattACTGTGATCTTGCGGGAACCGGCACAGTCATTTGCGGAAACCcggtcttgttttttttaatcacacaaaCATTTCGATAGCAGTCATATTATTTATGAATGGCCATTTCACATTGGGAAGCTGTGTGAATTGAATGCGTTTCATaagcatttttgtaaattacaaaaaacagaaatagaaattaaacaattaataaatgacCTACAAGCAAATGCTGTGCTGTctgtttagaaaaaaactgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51490 lncRNA upstream 8582 10261612 ~ 10264441 (+) True G34957
TU51451 lncRNA upstream 133290 10064217 ~ 10139733 (+) False fam219ab
TU51449 lncRNA upstream 154897 10064217 ~ 10118126 (+) False fam219ab
TU51473 lncRNA upstream 166582 10102885 ~ 10106441 (+) True G34941
TU51425 lncRNA upstream 239068 10032439 ~ 10033955 (+) True G34911
TU51488 lncRNA downstream 10570 10285767 ~ 10287373 (+) True G34956
TU51492 lncRNA downstream 13227 10288424 ~ 10291861 (+) True G34959
TU51629 lncRNA downstream 50669 10325866 ~ 10326714 (+) True G35040
TU51630 lncRNA downstream 51834 10327031 ~ 10327461 (+) True G35041
TU51631 lncRNA downstream 54692 10329889 ~ 10330322 (+) True G35042
XM_043238927.1 mRNA upstream 158238 10109179 ~ 10114785 (+) False fam219ab
XM_043238928.1 mRNA upstream 158238 10109186 ~ 10114785 (+) False fam219ab
XM_043240818.1 mRNA upstream 172743 10096934 ~ 10100280 (+) True LOC122346129
XM_043238151.1 mRNA upstream 183076 10089576 ~ 10089947 (+) True LOC122344631
XM_043238176.1 mRNA upstream 199061 10070450 ~ 10073962 (+) True fam151b
XM_043240753.1 mRNA downstream 1670 10276867 ~ 10282029 (+) True gda
XM_043240292.1 mRNA downstream 21935 10297132 ~ 10306693 (+) True tmc1
XM_043240424.1 mRNA downstream 34412 10309609 ~ 10318604 (+) True tmc2b
XM_043240831.1 mRNA downstream 44463 10319660 ~ 10324635 (+) True LOC122346143
XM_043240832.1 mRNA downstream 44488 10319685 ~ 10324635 (+) False LOC122346143
TU51450 other upstream 154897 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 473665 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1401505 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1968872 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2262424 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 453921 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 651626 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 771283 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1649031 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1973941 12249138 ~ 12255672 (+) True G35720

Expression Profile