RNA id: XM_043239212.1


Basic Information

Item Value
RNA id XM_043239212.1
length 6503
RNA type mRNA
GC content 0.49
exon number 35
gene id cntrl
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21046940 ~ 21069517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaaaacccttTGCGCTTGATcactgtgatggcaaagcaaaTTTTTCAATTCTTCAAACTATTCCTTTTcctgctgattttttttcttgttcagtATATTTCACTCCCGTTTGCATGCCTTCTActgtctcttctcttctttccTGCTTCAGTCTCAGCTTCCACATCCTACTCCCCTGCTGGATTCTTTCTGTCAGGTATTCACATGTGCCCCACCAATCAATGTATGATGTCAACATTGTGTTCTCCTGTCCTCTCAGGTGTTCGCTTTAGAGAGCGATGTTGATGCTAAAGCAGAAAACAGTGGAGTTGACCCGGGCCTGTCAGAAACACTATGAGCTTGAGCAGGAGTTGGCTTTTCACAAAATAGATGTCAAGTTTGAACCTCTTCCGTTTTATCCAGATCCTGAGGTGGAGGTAGAGAAGATTTCTAGCGAGAGTCCATACATAGGAAAGTCGCGTCAGAAAAGGAACATCACATTTCCCTCAGAGACTGATAGCGTGGGTGCAGAAAACCAGCAGCAGCCTGCCTCAGCGGACCTGACTGAGACAGACAGCCCAGGAGAACGTGACATGTCCAGACACGCTCAGCTTAGAGctgagGAGCGATTACAACAGTTGCATAAAGAAATTACAGCAAAAGAGCAGCAGATCCTTAAAGCCAGTGAAGAGCTACAGCAGCTAGAGGAGGCAGTTTCTCAGAGACGGATCTGTGAGGCTGAGAAGGATCAGCTCAGGCATGAGCTTCAGAGGAGGATACAGAGGCTGGGAGAGATGAGAGGAGAGATGGAGGCTATGGAGAGGCAGCTGGACAGGCTGAAtgatgagaggaaccaagcccAGGAGGAAATAGACCAGCTGCAGAATCTACTGTACAGCCTGGATCCCAGTGACCCCAGACATGCCCATGTAAAGGCTCAGTTGTCCAAGAAGACACAGCTGCTGGCCATCATGAGCAGAAAGCACCAGGAACTGGAGAACAGGCTGGATGACATGATCACACGCATCCACAAGGAGACACAGGAGATCAAAGAACTAGAGCAACAACTTACTGATGGTCAGATCGCTGCTAATGAAGCACTCAAGCGAGACCTGGAGGGCATCATTGCAGGTCTCCAGGAGTATCTGCAGGGGGTGAAAGACCAAGCACGAAGATCCCTGTTAGATTGCAGGCGTCTGCAGAAGGAGAAAGACGCTCTACAACACCTTCTGTGTGAGAAGGAGCAGCAATGCACACAGCTGCAGAAAGAAGCTCAGAGTGTTAAAAGCGCACAGGAGGAGCTGCAGCATCAGCAGCAGGAATTGGAGGATCTGAGGAAGGAGAATGAAGAGCTGAAGCAGACTCAGGGGCAGGTCAGTGAATATGAGGCAGAGCTGGAGACTCAACTGCAGGAGAGAGTTACTGAAGCTACACAACTGAAGGAGGAGCTGGGCAGACTGCGTCGACTCAGTCAAATGGAGCATTCTGCACTGCAGGCAGAGttgcagaaagaaagacaagCAAAAGAGAACGCTTTGGCACAGATGCAGATGACTGCTGACAGAGAGCTAGAGAACACAGACCTTCTGCAACAGGTCAACACTCTCCAGGAGGAAAGAGACAGTCTTAAGGAGAAGGTGGATGCTCTTCAGTGTGATTTGGAGCAGGTTAGGGAGGAGCTGCTTTGCCCAGAAAGTATCGCTAAATATTTAAGAGAGCTGAGAAGAGGCATAGCTACGGGACAAGAGATACTAAGGTATTATAGCTTTGAAGACCTTGGAGAACCAGTGAATAAGAAATTCATTGAGCTACAACAGGAGGTGCATCATGTTGTTTCTGCTGCTCAGAGAGATAGAGACGAGGCCCAGCGCCGTGAGGAGAGACTTGTTGGAGAGATGAGTTCGCTCAGAGAGAGACTCAAGAAGTACCAAGAAAGATACCAGGTTCAGCAGGCAGCGGAGAGACGGGCCGAGGAGGCGGAGCTCCATAGATTGAGAAAGGAGCTAGAAGATGCTCATGAGCAGCAGTACTTGATGCTGCAGCGTTTAGAGGAGACAGAAATGGACAGGGACCGTCTTCTTGCAGAATTAGAAGAACAAGATAAACAGGTAAAATCCGAAGAGAGCCAGACTCAAGAGCAGCTAGAATCTCTCAGTCTGGAGTTACAGGCACTCAGAAGATCATTTTCCTCCGCTGACAGGATGGCTGCCCAACAACTGACTGCAGCAAAGGACAAAATTCACTCTCTTCATAGCACTATAGAGAAAATTCATCAGGAGAGAGCAGCGAATGCAGAGGAGTTACAAAGCACCAGGATTCAGGCTTCCCAGGCCATTCAGGACTTGGCTAATGCTGAAGAAGAAATCGAGGTTCTCCAGAAGCTTTTGAGAGATAGGGTTCATGAGACAGATGGGAATATTCACAGTGGAACAAACTCTAGTATTCAACAGCATGAATTGGACAGATTAAAACAAACCTTGAAAAGACAACAGGCCCAAACCAAACGTCTCAGAGATCAACTATCACAAGCCAAAGAAGCTAACAACGTGAATCTAGAAGAGCTTCTGGAAGAGATTGGAGCGCTGAGAGAGACTCTTCTACAGCAGAATAACTTCCTGTCCAGTTTAGGAGATCCCCTGCCAAACACAGGATGTTGGCACTATGTCCCGCCAAATCAAAATGCCCCTAGTTTTGGATCTCAGGGCACACAAGACTCAGGTCTGGGCTCTGTGCACCCACAGTCCCCTGAGAGAGGTCGGCGGTCCTGCCACAGAGCACACAAAGAGAGAAAGCCTGTTAATGGAGGATACTGGGTCTATTCCCCCCATCCACACACTCATGGAAAGAGAGATGCACAGATGTTCAGAGACAGTGGAGGAGAGAGCGATATAGAGGGGGTGTCTGGGACACGCTTCACTCCTCCATCCGTCCCTGCTGGATTCACTCTACCTGATGGTACTGCTTTTCCTCCTGGTTCATTTATCTACAATCACCCTGTGCCTGGACTTCCTATTGGCTCAAGTACAGTCCTGTATGGGCCGCCCCCTGATGGAGCCAGGCTCATGTATGGACCTCCTCCCAGCAATCTGACTATTCCTCTGGTGCCCAGTGGGACACTGCACTGTAATGTGCCTGGACATCAGGACTTGgAGCGTGATCTGATGAAGGCAGAGCGTAGGCTGAAAGAGGAGTACGCTGATAGAGCTCACATTGATAAAGAACAGGAAGCACATCGAGAAAAAACAGCAGACCTACAGAAGGAAATCAAACGTCTGCGCAGGACTGTCCACACACTGCAGCGCCACATGAGTGGGCTGAAAGGCTCCTTATCACATGCAGAGGAGGAGCAGTGTGTGCTTGGAGAGGTGGAGTGTGTGGAGAAGACCCTGCTGAAGCGTAAAGCAGAACTCAGAGAGGCTGACAGGCTGCTGCTAGAGGCTGAGACAGAGCTCAAGGACACTCGAGCCAAGaCTAAAGAGAGCGTACAGCGCTACAGTGATGCCAGGAGGCGAGTGGAAGAGACCGAGCGAGAGCTGGTGGAGATGGAACAGAGAGCTCAAGATGGCGCCACACAGCTGGTGCAAACCAAACAACAGCACAGGAATCTTCAAGAGGAGGTTAAGGAGctgcagaaaagaaaacaggagCAAGAACGCACTCTACATGAAGTAGAGGAGGTCCTCGCATGTCAAGATGAAAAGTTTCAAGAAGTCAACAGAAAGCTCGAGAGAGTGACTGACAGACTAGTAAGTGCTGAGAAAGAGCTCAGAGAGACACAGAGCCTGGAGGTCAAACTCTTGCAGAGctgcagagagacagaagacTGTCTAGCACAACGCAAAACAGAACTGGACGAAGTGAGCCATCAGGTAGTGTTGCAGCAGGAGAAGCTCTCTTTGCTGGACAGGAAGCTGGAGCAGTGGAAAAAGGAAGAGGATGTGTTGAAAATTAGTGTGGAGAAACATAGGCAGGGCCTGTTGGATGTGCTCAGACAGGGAGAGGAGGATGCCCAACTTTTACACCAGCGCATTCAGGAGCTCCGTGTGGACGTGCAGTCTCTGGCCGTGCAGAAGGGAGAACTGGACTCTCAGCTGTCTGAGAAGAATAACAGACTGGCACAATATAAGAAAGAGCAGCAGAAGGAGGAGGAAACACTGCAGAATCTCCATTCAgccattaaaaaacataaaacagAGCTGAAGCGTGTGTTGGAAATGGTTCAGCTGGAGACTGGGGAACTAGAGGCTGTAAAGCTTCAGCATACCCAGAAAGAGGACCAGATAGAGAGGAGCCAGGAAACCCTGCTACAGGTGCGTGTAGAACTGCAGGGCGTGCAGCAGGAGCTACAGGAGCAGCGTGGCGAGACTGAGAGACAGATGAACCtgctggagaaagagagagcagagcTGCACAGCCTACAACAGAAGAGCCTCCACCTGCAACAGCAAACAGACACAGCAGTCCAAGAGAGGAGCAGCCTGCAGGAACAGTGCAGAAAGCTGGAGGCCAGACGGACACATGCTCAGAGGTGTTTGGAAACAACAGAAACGAGGGTGAGGACTGCAGAAACAAAGCTGTTTAGACTACAGACCGAGCTGGACAAACTACAACAGgaccagaaacacacacacgataaGAATCAAGAGATCATCAGGGACACGACTGTCCTACAGCAGCAGCATGAGGAGGAGTTGAGCAGATTGAAGAAACAGCTGGTCGAATCCCAAACTCAGTTAGATGAGATCCGAGAGGAGGTTAAGGCTGCGAGAAGGCAGCGGGAAGAGCTTGTGAAGCAACAAAAGGAGCAAAAGGCTGAACTGcaggagaaagaggagaagaTCAGGAGGAGACAACAGAAGCTGGACGGACTGGGTCAACAGCTGCAGGAGCTCAAGGCTGAAGTAGTCACGAAACAGACACAGCTTCAAGAGCATGAGAAGCTGATGAGAGTGCAGGCAGTAGAGAGCGCTCTGGGCCTCAGGCAGGAGCGCATGGAGCAGGAATGCAAACAGTGCACTGCATTACAAGAGCTGGTGGAGAAACTAGAGCAGGAGGTGTGTGAGCGGGACTCCAGACTGCAGGAGGATCTGCTGTCTGACAGAACCGGCGCTGAGGCCCAGAGGAACCACAGCcgcacaaacagacaaaaactgCAGCGAGTGGAAAAGCTGCGGAGCCAAGAAGAGGACAACACTCAGCTACTTGAGATTAAGGACAGCGTGTATTCTCGGAGGTCCCGGGTGAAGGCAGAGCTGGACGATGGGCTGAAGGAGCTGGAGTCGCCCTCTAGTGCCTCCTCAGACACAGACAGCCTGAAAGAGAACCGTCCTGGTGTCACACTGTCCGTGGGTAACCCCGCATACAACACTACGGATGAACAGTGGCGAGGCGAAGCGCTGAGGGAGAGGCTGAGGCAGCAGGAGGACCACTTGAAGGTTCAGCTGCGCAGACGCATGTTCTCCCAGCAGGAAGCTCTGAGTCAGCGCAGACTGCAGACTGAAGGCAGTATTCAGGGTCTGCGCAGACACGTCGACAAGCTGGACCAGCTCCTCAGCAACTCCTCCAAAGACTCCTATTATTCAGATGACCAGGAAGCTCTGCCAAAACAATGCACCATTGAGCCTTTTGTATTGACATGAGCACACGTTTGCATGTGCAGGAACGTAACCAAGCTGCAAATATAAAGGAACTGATTTCAGATTGGAATCATGAAAGATTGAGATTATATAAGTAGGTGGTTAAAGGGGAGCACAGAACTTACCAGAGGAGCAGCTCGATTTAACCCGCTTCTGCCAGAAACAAGCAGTCAGAAACCACTGAGCCAAATTCACGAGACCGTGGCAGTGACTTCCTGCTTCAGTTACAGCAGAGGCTGGATGTGTTGCGGTCTCCTAAATGCCAAAGAAACAAGCTAGCCTCAGCACTTTCCATATACAAATAAGGAAACTTGAGGCAAAAATAAGATGGTGAAAGTTTGTTCTCTACCTCCGATTTGCTCTTGTTGCTTtatgaaattacttttaaacaaatatgtgccTTTTCAAGGTTTGCTCATGTTAAGTAGACGGTGTCTGAATGTTTACAGGTGAAACAGATGCAGGTTTCACGTTTCATCGTGTGACGTCATTGATGCAGGCTGTGCTCCGGAGTTCATTTTTATGTGACTTATCAAAAATGACCTTGTATTCAAAGCCAAGATATGCAGGATATTTATTACAGCACTTTTCTTTATATACAGTTTCTCAaatcaaatacaattaaaattaagtgtgCAATACAATTAGTAGCCATTTTCTCGGTTTCCTCTTCTCAAGATGTCTCAGCATTATTGCTTATATACAGTGATCAATCGTGTATGTGGACAAAAACGCAGTCTACAGTATTGTCTTTattaacataattacaaacaaaagtCACTTACAGAAGACAGAATTGAGCAGAAGATTAATTTTTGCAGATGTCATTAAGATGTGAAAAAAGCAAGACAGTAggagcaaattaaaaatggattGTTCAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251063.1 lncRNA upstream 51223 20981027 ~ 20999088 (+) True LOC122345965
TU56438 lncRNA upstream 99313 20946345 ~ 20950998 (+) True G38209
TU56426 lncRNA upstream 107198 20938833 ~ 20943113 (+) True G38199
TU56422 lncRNA upstream 162645 20887084 ~ 20887666 (+) False pappab
TU56273 lncRNA upstream 303431 20744558 ~ 20746880 (+) True G38118
TU56564 lncRNA downstream 45108 21114625 ~ 21114831 (+) False tecta
TU56609 lncRNA downstream 220414 21289931 ~ 21297824 (+) False G38297
TU56611 lncRNA downstream 220414 21289931 ~ 21424704 (+) False G38297
TU56613 lncRNA downstream 220414 21289931 ~ 21425456 (+) True G38297
TU56607 lncRNA downstream 226703 21296220 ~ 21424704 (+) False G38297
XM_043240153.1 mRNA upstream 3667 21031727 ~ 21046644 (+) True c5
XM_043238704.1 mRNA upstream 19374 21026850 ~ 21030937 (+) True prdm12b
XM_043239566.1 mRNA upstream 69925 20973946 ~ 20980386 (+) True surf4l
XM_043239565.1 mRNA upstream 76845 20968218 ~ 20973466 (+) False ciz1b
XM_043239213.1 mRNA downstream 5653 21075170 ~ 21081018 (+) True gsnb
XM_043238932.1 mRNA downstream 15431 21084948 ~ 21120840 (+) True tecta
XM_043239759.1 mRNA downstream 51646 21121163 ~ 21151843 (+) True usp2b
XM_043239760.1 mRNA downstream 72359 21141876 ~ 21151843 (+) False usp2b
XM_043239132.1 mRNA downstream 88918 21158435 ~ 21174715 (+) True tlcd3a
TU56423 other upstream 190911 20850235 ~ 20859400 (+) False pappab
TU56219 other upstream 487959 20558827 ~ 20562352 (+) True G38094
TU56215 other upstream 536395 20432347 ~ 20513916 (+) False G38092
TU56300 other upstream 634956 20407768 ~ 20415355 (+) False LOC122345834
TU56242 other upstream 763034 20284623 ~ 20287277 (+) False LOC122345823
TU56565 other downstream 48578 21118095 ~ 21118839 (+) False tecta
TU56600 other downstream 111022 21180539 ~ 21200612 (+) False LOC122345215
XR_006250979.1 other downstream 192037 21261554 ~ 21270874 (+) False adora2b
TU56674 other downstream 613762 21683279 ~ 21685619 (+) True G38318
XR_006250959.1 other downstream 766832 21836349 ~ 21842194 (+) False znf541

Expression Profile