RNA id: XM_043239507.1


Basic Information

Item Value
RNA id XM_043239507.1
length 2513
RNA type mRNA
GC content 0.44
exon number 17
gene id rad17
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10060414 ~ 10065563 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agctttaaagggatagttagcGCAATGTTGCTTGTTACTTGCAACCGCAAATAGTCGCCATTGTATTTCTACAAAGATCACCTGTAGAAATGACTAGGCACAGTTTTGCATGGAGTAACTGAATGGGACATCTGACTTGATGATGTCAAAGCTGTCTCTGGGAGGAAAACAATCCTCGGGAAAAATAAACAGCTGGGTGGAACCATCATTTGGTGAACTTTTGGGAGGAGTCAACAGATCCCTGAAAAAGGGGCCACTCTCAGGGGAAAGCAAAAGTACCCGGTGGCTGTCTACTGGGAACCAAGCAGAGAAAAAGTCCAGGAAGAGGAAAGTAGATCCCAATGTGTCCAGCAACCAGATCAGTGAGTCAAGTGAAGCATATAAACCAGACCAGGATGAGCCTTGGGTGGATATGTATACTCCCCAATCTCAGGCCGAATTGGCAGTCCACAAAAAGAAGGTTGAAGAAGTTGAAGGCTGGTTGAGAGTCCATTTGGACAAATCAAAAAAGGGTGGCGCCATTCTGTTGCTCACTGGCCCCTCAGGATGTGGGAAGACGGCGACTGTTCAAGTTCTGGCCAAGGATTTAGGTTTTCAGATCCAAGAGTGGTCAAATCCCTCCGCCACCTCTCAGTACAAAACGGAGGATTTGTTCAAACAAAGCTTTGATCCAGATTCAAGGTTTAACAGTTTCCATGGTAGCTCACAAACAGGGTTGTTCCAAGAGTTCCTGCTAAGAGCCAACAAATACAACCGTCTACAAATGAGTGGAGAGAAAGTGACCGAAGACAGGAAAATAATTCTTATAGAGgaatTTCCAAACCAATTCTATAGGCAACCAGGGTGCTTGCACGATGTACTCAGGCAATTTATTAAGACTGGCCGGTGCCCACTGGTCATCATTGTGTCCGATAGCCTTAGTGGGGATAAGAACTCTAGACTTCTCTTTAAGGATGTTTTGCATGAGCTTGACATTCACAGCATTAGttttAACCCTGTGGCCCCCACCAGTATGATGAAGGTCCTAAGCCGCATTGTAACCACTGAAGCAGGAAAGaGTTCTGGCAGGATCTCTGTTCCTGATAAAGGTGCTCTAGATCTTCTTTGCTCAGGAAGTTCAGGAGATATTCGCAGCGCCATCAACAGCTTGCAGTTTTCTTCATTTGCCGACAATTGTCTGGAGAAAAGACTTTGGGCTTCCAAGAAGGGCAAATCCACAGCAAAACCTGTCGTGAGGGCAAAGGGCAGGAACAAGTCTTCAAAATCAACCGACATGCAGGACGAATGCCTAGCTATTGGAGGGAAAGATGCTTCTCTTTTCCTTTTCAGAGCTTTAGGGAAAATCCTCTATTGCAAACGTGAAAGCTACGAAAGCTCTCAGTCACCCAAGCTGCCTCCACATTTAACAGATCATCACAGGGACAGACTACTTGTCGATCCtgaaCTTGTCATTGAGCGTTCCCATATGTCTGGGGAATTCTTCAACCTCTACCTGCATCAGAACTACCCTGACTTCTTTTCGGATGTGGAGGATATAGCACGAGCCAGCGAGTACCTCTCTGATGCAGACTTCCTGACAGCAGAGTGGAGTTCAAGGTCGACTATGTTGGAATATGGCTCATCAGTGGCCACTAGAGGCCTTATGCACTCAAACACTTCTCGAGCGCAAGCCAGCAGTCAGTCCAATGCCGGATTCAGGCCTCTTCATAAACCGCATTGGCTACACATAAACAAGACGTATCGAGAGAATTACCTGACAGCTCAGTCGCTCTTCTTAAATTTTTGCCTTACTCCTGTGAGCCTCCTGACAGAAATGGTGCCTTACCTTGCAAAGCTCACCAACCCAATGAGAAATCAAGCTCAAATAGCCTTTATCCAGAATGTTGGCCATCTTTCTCAAAAGAGGGTTCCTGGAAGGCTGAGACTTGAAGCACTTAATGACAAAGACCCTGGCATTTTGGATGCTGACAGTGAAAATGAAGATTCTGCTGCTGCTCAGTCACTTGACCCAGAATCCACAGCAGGAAATGTCACAACTGAACCCGCACTGCCAAACAGCCAGGATCCTCCCGGGGAACTTCCTGCCAGCCAGCCCCAGCCCACAAGCACTGAAGCCCTTTTGGATGAGGAAGACCTCTTAATTGAGGAATACGACAGTGATTGACTGCCATCACATGCCATGGACATATTTAATATCACTTGCCCTGATGCAGTTGTTGTACCTTTTAACTAATAGGTTTATGctgttgtttgttcatgttttaaGATGGTAATTATTAGTAGGTATTTATGTTCCTCAACACAGTATTTTGCTGTAGAGAATtgttcatattcatttttatttgtgttgaaAATGTTCTATTCACAGTTTCAGCTACTTTTGTTTCAGAAGATATTAGtgaaagtataataaaaaaaaatacagtttgacCATTTACAGCCATAATTAATGATTTATGTTGTAACGTTTTGACTGTCAAGTGACTGCAATAAATCAATGTTTGCAACTTTGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51425 lncRNA upstream 26495 10032439 ~ 10033955 (+) True G34911
TU51418 lncRNA upstream 31629 10008047 ~ 10028821 (+) True G34905
TU51323 lncRNA upstream 249600 9808449 ~ 9810850 (+) True G34861
TU51302 lncRNA upstream 292629 9767294 ~ 9767821 (+) True G34842
TU51301 lncRNA upstream 294101 9765970 ~ 9766349 (+) True G34841
TU51473 lncRNA downstream 37322 10102885 ~ 10106441 (+) True G34941
TU51490 lncRNA downstream 196049 10261612 ~ 10264441 (+) True G34957
TU51488 lncRNA downstream 220204 10285767 ~ 10287373 (+) True G34956
TU51492 lncRNA downstream 222861 10288424 ~ 10291861 (+) True G34959
TU51629 lncRNA downstream 260303 10325866 ~ 10326714 (+) True G35040
XM_043238610.1 mRNA upstream 18140 10034953 ~ 10042310 (+) True erap1b
XM_043238603.1 mRNA upstream 32413 9863631 ~ 10028037 (+) False arvcfb
XM_043238530.1 mRNA downstream 501 10066064 ~ 10069834 (+) True ccdc125
XM_043238531.1 mRNA downstream 511 10066074 ~ 10069834 (+) False ccdc125
XM_043238176.1 mRNA downstream 4887 10070450 ~ 10073962 (+) True fam151b
XM_043238151.1 mRNA downstream 24013 10089576 ~ 10089947 (+) True LOC122344631
XM_043240818.1 mRNA downstream 31371 10096934 ~ 10100280 (+) True LOC122346129
TU51316 other upstream 261092 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1188932 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1756299 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2049851 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 2262482 7754074 ~ 7797968 (+) True p2rx1
TU51709 other downstream 663555 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 861260 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 980917 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1858665 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 2183575 12249138 ~ 12255672 (+) True G35720

Expression Profile