RNA id: XM_043239636.1


Basic Information

Item Value
RNA id XM_043239636.1
length 4377
RNA type mRNA
GC content 0.45
exon number 8
gene id ptar1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19448258 ~ 19457740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGTTGTTTATCAGGCGGTCGTCCGGTTTAATGCTCAAAGCGGCCTGGACCCTCGCGCTCAGCCGCAGGGAGAACATAGTGCAGCAGCCTGTGTAACTTGCGCAGACAAGACAGCGACTGGCTAACCGGCTACTAAACCAGCGGCCAGCAGCGGAGAGAGCTCGGCAAGCCTCGCTTTTAGACCAGCTCGTGGGAAAAGGTGTCCGCGGCGCCTGTTTAACAAGCACCGCGCAAACGCCGAAAGTTTCTCGGGAGGGAAACGCGAAGCGTGCGTGCTTGTCATGTTGTGGCTAGTAGCCTATTTGGATTTGTTGGTGGCTGGTCAGTGCCCCATCCCAATGGTTTCATCTCGCTCTTCTCCTATGACATTCTTTGATGAAATTGGCCTCATTCCGTGCCCCGAAGCCCGGTACAACAGAAGCCCCATCGTCCTGGTGGAGAATAAGCTGGGAGTAGAGAGCTGGTGTGTCAAGTTTCTGCTGCCCTACGTGCATAATAAACTCCTGCTATATAGGCAGAGAAAGCAGTGGCTCGATCGGGAAGCACTGGTAGATATAACCTGCACACTGCTTCTCCTAAACCCAGATTTCACCACTGCGTGGAATGTCAGGAAAGAGCTCCTGCAATGTGGCGTATTAAACCCCGAGAAGGACCTTTACTTGGGCAAACTTGCACTATCTAAACATCCTAAAAGCCCGGAGACATGGATACACAGGCGTTGGGTGTTGCAGTGGCTGCAGAAGGAGTGCTCTCCTTCCGGACAAGAACTGAAGGATCAGGCCGAACCCAGAGGAGACGCTGTGAGGAGGAGACCGTGCGAGCGGCTGCAGAGAGCCCTGCAGGAGGAGATGAGGGTCTGTACGGATGCAGCCGGCCGTTACCCCAGCAACTACAACGCATGGTCCCATCGCATCTGGGTATTGCAAAACATGGCTAAAGGCAATCTGAAGGTTCTGCATGATGAGCTGTCCTCCACCCGACTGTGGGTGTCCATGCACGTGTCAGATCACAGCGGCTTCCACTACCGTCAACACCTGCTCAAGGCCCTGGCCAGAGAGCTGAGCCAGGTTGGAGAGACGGAGCTCCACCCCAGCCAGCAACCTAATGGAGAGAGCACAGCGGGCGCGTCTGATGACAATCACCATAATGACGTCATCCCTCAGCTCTTCCACAAGGAGATGGAGCTCTGCACCGATCTGATCGAGTCGTATCCGGGTCACGAGACACTGTGGTGCCACAGGCGACATGTCTTCTATCTGTGGCACCAGTGGCGAAGGGAGCACCTCCAGGGGGCAGGGTCACAATCTCCACCTCTCACCCACACCGACGTCCTCCTCAGCGAGGAGCCCTGTGACGACGCCAGCGCCTCCCAGGCCATGGACGTTGACTGTGTTCTGGATGGGAGCAAACATGGAAGCTACACGCAGGACACCAAGCGACTAAAGCGGGGACCTCTGCTTCCCCACCCCGGACTTCCCTCCGAGCACACTTTTGTCTCTAGAATCCTCACGGGCTGCCGGAGCCCCGAGCAAAGCCGCTTTGCCATTGCCTACAGGAAGTGGCTGGACTCCGTTATAGGTCAGTAGCGTGAGAAACACTCCACCCACCAAGATGTGGGAGAGCTGTGATAGGTCAACTTATTTCTGGCTCCAACCGCCCACACCCGCTTCTCTGAAAACGGCTGGACTTCTTGGCCGGTTTGTCAGAGATGCTCTGCCGGAGCAAATTCCCGCTCATGATGAAAACCCATGAACCCGTCTCCACAGTCTAAGCCTGGTCTGTTTCAGCTGCTTTAGTTCAGGTACTGGATATCTCAGGTCTGTTTTCAGTGTACAATCCTTTTCTCTGTCAGACGctacaatttgtatttttttttttcttccatataATTTGGTTGGTTTTTACGTTGTTTAAAGTCTTCCACCACAAATCAATAACAGTGTGCCCTCCTCATGCTGTCTTCAGTTTTATGATTCCTGTCGGGAATCTTAAACGCACACTGTGGTGCACACTTGAAGGGAACACTTAGAGCCCAAAGTGATTCTGACCCAGTTTCCCTCTTTGTTTAATTGAGGGCAGACTGGCTCTGAATTCCATCTACTGCTCCTCTTTGAACTTTTGTACTGAAGCATGAACATTTTTTCAATGAATACCTAGAAGTTTTGCTACAATCAGTAATGTGAGCACAATCATTGAATTTAAAGTTTCCTGGAGCCATTTGATATGAAATATTAGGGCTAAAGACAGACTTGAGTTTTAATAATGGAATAAATTGATAACTGCACATGAAATTTGCCGTTTCTAGGTGCTCTCCTCATTCAGGTGAGTATTTGTATTATATGACATATCTGTTGCAGGGTCAGCATTTCTTCAGTTCATGCAGATGATTCTTGGGCGTTTGTGAATAAATGTTCCTGAAGCACATcagcagcatcatcatcatcatcatcacaataACAAAGGCCACGTTGTCACATGGACTAGCCTCAGCATTTAAGCACAAGTTTTGGGTTCTAGTTCGTCCAGGTGGTCTCACAGATGCATGGGTTTTCATGATGAAAGGGAATTGCAGAAGTAGGAATAGGCTTTTCTCAGCTTGGCCCAAGCGTGGCTGCAGAAATAACATGCTGCCACGTTCAAGCCCATCTGGTGCAGAATGGTGCTTCTTCTCTGCACTGGGGGAGTGTGGACCCCTGAGGGGCCAGGGTTTACaaatgctgctttttgtttAACACTATTTTGAacttaaagtatatttatgcaaatatgaaaAGTGAATTGTTGTTAGCTTCACTTATGTGATTTATTAAAGCTAATAAGCTATTAGACAGTTATGGTTGACTCACTGTTACTCAGTAATTATTCAACTTGTAATAAACTTTGAAGTTTCACAGGCTCAATCTTGCATTGACAACTTACTTCATTCATACAGCTTAGAGTAGGTTGTGAAAATCTGATTAGATTTTATTCGATCTCGCTCTTAAATCAAGGACAGTGCCCATTCTACATATGCAAAACTAGTCTAGTTAGGTGAAACCATATGAACATATTAGCAAAGCTTCTATGAATCCTGTCTTTCAGCATATCTATCAGACTTGCACAGTTCAATCTTAAGTTTCACTTTATAGAAGTCTACTactgttcctttttttttgcacagttgCACAAGAACTAGATTTATGAAAGTAGTCGAGTTACGTAACTTCTAAACTGACTTTATAAAGGGCCATGCCAGAGTGGTTTTCTCTGTTCCTGCATGTCTCGGACcctgacgtttttttttttttttctcctttgagCTGCAGCAGCAAAATTACCAGATGTCTGTCGCATAATTCTAAAAGGTTCCCCCCGAGAATAAAGCCAGCGTTTTCCTCCATGCCATTCCTCTGTTTAACGCAATGTTTAGCAGCTGCGCTGACGGTGTTTGATCATTTTTCTCTCCTTATAATTACAGGTGTGTGCACAGGTGCTTGTTTTAGTTGATGGTGATAACCACACCTGCTGTTAAATAAACATCTGCTAATAGAGTCCTGTTTGGAAGAACAGCCTAAAACTGGAATGGATCTGTAACAAATGGCTTTATATTTTGTCACTCTGATCTGAAGTTATCTTTTTGCATGTACATTATGTGTGTACTGTTGTATTGGGATCAAGGTCACATTGTCATTGtatttgattgcattttattaGACTTTTTTGATTTCATGACCCATACATGCAGAGGCAGAAAACATTGCGTTGCTTTTTGGCTCCCTAACAATTAGCTCTTTGTAATAATGCTATAGGTGGTAAATGTATTGCCTactaacctaaaccctaacgGGCGGTCTTATCAGTTATATTGTTGAAAACGtacaaattacaatatttttgtctttatatcTTTTCAGGGCTTCCTATTTTACATTGTCCGTTCCCCAAACGGTTCACAGGTAGTCCTACATTATCTTAGAggttttaaataatgtacattttaatgtgaaatataCAGAGGAAGCACATAGTATTTCCAGTTATGTCATGTCCGTTTCCATTGATGTAATGTCAGTTGCTGTGTGAATACCAAAAGTTTAGCAGCGGTTACACTGTAAAGCATAAACAGATTTGAACTTACTAGTCCATCTATGCAGAAGCATGACAGAGTGTATTTAGCTTTAGAAAGAACAAATGTAGCCTaagattttgtattttcatgtaTTGTCTGATAAGCTGACAAGGTACTGTAGGTTTTTGTAGGAGCCACAATAACCAACATTTATAGCATCTCAtccattatgtattttatatttatttgtattaaaaaaaaactgtattgacCGTAGATGTTTTGTCAGTTGCCTACCACATTAAATAAAGCTACTCTGAAAAGGTC

Function

GO:

id name namespace
GO:0018342 protein prenylation biological_process
GO:0008318 protein prenyltransferase activity molecular_function

KEGG:

id description
K14137 PTAR1; protein prenyltransferase alpha subunit repeat containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55663 lncRNA upstream 160066 19288016 ~ 19288328 (+) True G37734
TU55492 lncRNA upstream 521392 18925437 ~ 18927002 (+) True G37620
TU55491 lncRNA upstream 522961 18925210 ~ 18925433 (+) True G37619
TU55490 lncRNA upstream 523718 18923302 ~ 18924676 (+) True G37618
TU55385 lncRNA upstream 698339 18678596 ~ 18750055 (+) True G37540
TU55830 lncRNA downstream 136330 19594070 ~ 19647075 (+) True G37843
TU55986 lncRNA downstream 301971 19759711 ~ 19760204 (+) True G37951
TU55992 lncRNA downstream 336703 19794443 ~ 19867398 (+) True G37956
TU55996 lncRNA downstream 415502 19873242 ~ 19874144 (+) True G37958
TU56081 lncRNA downstream 530544 19988284 ~ 19998252 (+) False col27a1b
XM_043239115.1 mRNA upstream 153433 19289551 ~ 19294961 (+) True slc14a2
XM_043239116.1 mRNA upstream 153433 19289597 ~ 19294961 (+) False slc14a2
XM_043238712.1 mRNA upstream 172245 19224925 ~ 19276149 (+) True setbp1
XM_043240561.1 mRNA downstream 618 19458358 ~ 19506727 (+) False apba1a
XM_043240560.1 mRNA downstream 3933 19461673 ~ 19506727 (+) True apba1a
XM_043240562.1 mRNA downstream 3933 19461673 ~ 19506727 (+) False apba1a
XM_043238574.1 mRNA downstream 63688 19521428 ~ 19533070 (+) False LOC122344925
XM_043238573.1 mRNA downstream 63688 19521428 ~ 19533069 (+) True LOC122344925
unassigned_transcript_958 other upstream 30225 19418098 ~ 19418169 (+) True trnap-ugg_3
XR_006251073.1 other upstream 449115 18962322 ~ 18999279 (+) False msh3
TU55500 other upstream 507499 18938813 ~ 18940895 (+) True G37626
TU55503 other upstream 507499 18938813 ~ 18940895 (+) False G37626
XR_006250966.1 other upstream 600729 18842819 ~ 18847665 (+) False arsk
TU55947 other downstream 249598 19707338 ~ 19709926 (+) False nrarpb
TU56198 other downstream 685543 20143283 ~ 20151585 (+) False lix1
TU56199 other downstream 690681 20148421 ~ 20151585 (+) False lix1
TU56217 other downstream 727295 20185035 ~ 20513916 (+) True G38092
TU56241 other downstream 826883 20284623 ~ 20287317 (+) False LOC122345823

Expression Profile