RNA id: XM_043239641.1


Basic Information

Item Value
RNA id XM_043239641.1
length 4072
RNA type mRNA
GC content 0.44
exon number 10
gene id prkaa1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6965149 ~ 6977675 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctttccctctctatctctatctcgctcgctctctctctcaggtagGGCCTCAGAGCGAAGATGGCGACGGACAAACAGAAACATGAAGGCAGGGTGAAAATCGGACATTATATTCTCGGAGACACCCTGGGAGTGGGCACGTTCGGAAAAGTCAAAGTGGGCCAGCATGAATTGACCAAGCACCAGGTGGCGGTAAAGATTCTGAACCGGCAGAAGATCCGCAGTCTGGACGTGGTGGGCAAGATTCGACGAGAGATCCAGAACCTCAAACTATTCCGTCACCCGCATATCATCAAACTTTATCAAGTCATCAGCACACCAACAGACATCTTTATGGTAATGGAGTATGTGTCAGGCGGAGAACTCTTTGACTACATCTGTAAAAATGGAAAGTTGGACGAGAAGGAGAGCAGGCGTCTTTTCCAGCAGATCATCTCAGGGGTGGATTACTGCCACAGACATATGGTGGTGCACAGAGACCTCAAGCCTGAGAACGTCCTGCTGGACGCGCACATGAATGCCAAGATTGCAGACTTTGGCTTGTCAAACATGATGTCAGATGGAGAATTTTTAAGGACGAGTTGCGGTTCTCCTAATTATGCTGCTCCTGAAGTCATCTCTGGAAGGTTATACGCAGGTCCTGAGGTGGACATCTGGAGCAGTGGAGTGATTTTGTACGCCCTGCTGTGCGGAACGCTGCCGTTTGACGACGACCACGTGCCAACACTGTTCAAGAAGATCTGCGATGGCATCTTCTTCACGCCTCAGTACCTGAACCCCTCCGTTATTAGCCTTCTGAAACACATGCTCCAGGTGGACCCCATGAAGAGAGCCACTATTAAAGAGATTCGGGAGGATGAGTGGTTTAAACTAGATCTCCCCAAGTATCTGTTCCCAGAGGACGCTGCGTATAGCAGTAATATGATCGATGAGGAGGCACTGAAGGAGGTGTGCGAGAAGTTTGAGTGCACTGAGGAGGAGGTGCTCAACTGCTTGTACAGTCGGAATCACCAGGATCCTCTTGCTGTGGCCTATCACTTGATCATAGACAACCGGCGCATTATGAGCGAGGCCAAAGATTTCTATTTGGCCTCCAGCCCCCCGGACAGCTTCCTAGACGACCTGCCCGCGCACCACTCCGCGAAGATTCACCCCGAGAGAGTGCCATTCCTGGTGACCGAGTCCCAGCCACGACCTCGACACACACTGGATGAGCTCAACCCCCAAAAGTCCAAGCATCTCGGTGTCCGGCGGGCCAAGTGGCACCTGGGAATCCGTAGCCAGAGCAGACCGAATGATATCATGAGCGAGGTCTGTCGTGCTATGAAGCAGTTGGACTATGAGTGGAAGGTAGTTAATCCTTATTACTTGCGGGTGCGGAGGAAGAACCCAGTCACTGGCATACATACAAAGATGAGCCTCCAGCTCTACCAAGTGGACAGCAGGACCTACTTACTAGACTTCAGGAGCATAGATGATGACATGATAGAAGTGAAATCAGGAAGTGCCACACCTCACCGCTCTGGCTCAGTCGGTAACTACCGGACTACCCTAAAGAACGACAGGAACGAGAAAAACGAATGCGAGGATGCAGCAAAGGGCGACACGTCCGCACCCTCCACGCCTCCCATATCCGGAGGGAAAGCGGCAGAAGGCTCTCTGGCTTCTTCTCTTACCTCCTCAGTGGATTCCACAGGGGGAGAGATCCTCCCCCGCCCAGGAAGTCACACCATAGAGTTCTTTGAGATGTGCGCCAACCTCATCAAGCTGCTAGCGCGATAACTTGTGGTTCCTCTGATGccttctctctcactctcctctGTCTTCCCTCTCACTCTCTggcttttttctctttcctctggAATACTGTCTACCTCTTCATCCTCTGATATCCGTGTCATCGTCCACAGCGGCCCTTCTATCTCTGttctttttgtctctctttctctctctcagcgtCTTTAGAGCAATAAGCATGCGGACGGACTCGAGACTCCATGCATCCCATTCGCATGAACGCGCTGAGCGGTCTGTGGCACTGCGGTCACCAACATCAGCCTGTTTAGAAGCATTGAGAAAAGGTACAAGAAGGAAAAGGACGGAGGTTGCTGTGTTTCTGTGCCACAGTTAAGATGTCAGAAAGATTGCTAACTCTTTTAGGGATGGTTTTACAGTTCTTTTCTGGGTTCTATAGCGAGGATTTCCTCGCAGGGAGTGAGACGTTGAGGTGCATTTAAATGAGTTATACACTGAGCTAGCTGTACTGTACACAATGCTGTTGCTATTCTTGGTGGACCAAGAGAGATATAAAGAGCGAGCCCTTGTGAGGCATGTGGGACGACAAGAAAGGCAGAAAGCGCTTTTGCACAGTTTTACCTGTAAGTTTTTGTGGGCCAGTGTCAGAACTGGTTATCCCATTGAAGCGGCCTACTGGGAAGGGCACTCAATTAGGAGGAGCCACCTTAAAAGCAAGGCCAATTTAACGTGGTGGGCACTTTAACACAAAGGGACAACTTGATAAATCAGCCTTTCTTAAGGAAGAGACcaatattaaacacatttatccTGAAGGAGTGCAAAGTCCTTGCCTCCGTTTCatagatttttgttgtttgtttttgtttgtctgtcacactttagtttttttttttttttttttttttctactcgCTCACATTTTACAGAAATTTAAGTATATACAgaatttaaacatgcatttggATTTATATTTATCAGTGCTTTAAACGGGGTTGTAGATTGTATTAAAATTGTGATATCGGactggattttttaaaaaatatttgattgtatCGCTGTAAGATGTTTTATTCCATACACTGCTTTatcaaaaactttttcttttttttttttttactgttctttTAGTTGTTTTACAAAACAGTGGTTGCTTGAAAAAGACATTCTCATTAAAGGAAATGTATCCCCCCCAACTTTTACAAATGAAGTCTATTTGGTAAGACGGGTCAAGTATTAAAACGTTTTACGTTTACGGCTGAGatgtaataaacacacacacacacacacacagctgaggtGTCTAATTAAGTTTATCACCacaatgaaaatggaaaaaaagatccAATTAGAATTGAAATATTGACGCATCCCGATCGATCTTCATACTCACGTCTTAATGCTGTGATTGCAAAGTCATACGTGTAAGATCAGAAAAGAGGATAGCGCTTCCTACTCGCATGTGACTTTATGTGCCCTTGTACGAAACTGTGTCATAAACAGAATTCTACAAAAGTCCACAAAGAACTGCAACCCGTTAACAACGAATGCAATTATGTAGGAGCTCACTGATGTCTTCAGAGCAGTTGTTTCatagatgaaaaagaaaacaatgcaaGTTTTAAACTACTTTACTCGGAGCTCCAGCTCTGTTCAAATGAAATATCCAATATAGAAAAATCTAACacgtaatttaaaaataatacattaattgtATCGCAcagcatatttacattttaaagtcgTTCTTACCGCGTTTAAAACTCTTAGTTCTTACAAATGCAGCAGTGTCTCGTTCTCAAAAAGAATAGGAGATTTAAGGCCGGTATTTCTGATTTGACCTTCTGGAATTCTTGAGTCTTTTGTTACGTGCGTTTCCTAAAAGGATGGTgacggttttttttttgtcgtcaACTGCACTGTCATTTCAGAATCTCCCATTAATGAGATTTCAGAGCTAAAACTTGACAATCTGTGCTTTGCAAGTCAGCTTAAGACAAATCCAGGGAAATTTAGTTTTGCTCCGTTCCCTTTATCCCCCCCTCCCAAAGGTTATTTCCCCATGTAGCTGTCTAATCAAATGTTAACTCTTCTTTATCACTAGGGAAGCATTTCAGTGTCTCCACGGGTTGTTTATTCAGCCAACGCAAAGAGGTTTAGAAAATCTGTTGTTCTTCTCTTAACTGCAGTTATGTTGATTATCTGTGCAGAAATGCACCTTGCCAATGTAAATTGACAGATATTTACTGATAATTTACAGTTGAAAAGATGATTTGTAAATACAACTGCCTAATAAAATGATACATGAAAAAATGA

Function

GO: NA

KEGG:

id description
K07198 PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49676 lncRNA upstream 34364 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 43510 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 268507 6617276 ~ 6696642 (+) False dab2ipb
TU49605 lncRNA upstream 470619 6491552 ~ 6494530 (+) False G33665
TU49702 lncRNA downstream 3042 6980717 ~ 6981993 (+) False kank1b
TU49863 lncRNA downstream 156619 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 157232 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 167385 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 169360 7147035 ~ 7147616 (+) True G33853
XM_043239642.1 mRNA upstream 652 6963937 ~ 6964497 (+) True ifitm1
XM_043239740.1 mRNA upstream 2760 6957273 ~ 6962389 (+) True kyat1
XM_043238333.1 mRNA downstream 880 6978555 ~ 6988772 (+) True kank1b
XM_043238334.1 mRNA downstream 2980 6980655 ~ 6988772 (+) False kank1b
XM_043238228.1 mRNA downstream 14547 6992222 ~ 6999388 (+) False LOC122344685
XM_043238229.1 mRNA downstream 14909 6992584 ~ 6999388 (+) True LOC122344685
XM_043238232.1 mRNA downstream 14913 6992588 ~ 6999388 (+) False LOC122344685
XR_006251122.1 other upstream 13420 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 13783 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 14391 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 14868 6950211 ~ 6950281 (+) True LOC122346219
XR_006251123.1 other upstream 15184 6949899 ~ 6949965 (+) True LOC122346228
TU49701 other downstream 873 6978548 ~ 6981993 (+) False kank1b
XR_006251030.1 other downstream 308915 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 360793 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 360793 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 396231 7373906 ~ 7449497 (+) False LOC122345182

Expression Profile