RNA id: XM_043239745.1


Basic Information

Item Value
RNA id XM_043239745.1
length 2507
RNA type mRNA
GC content 0.44
exon number 13
gene id kyat1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6957273 ~ 6962389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttgcataaaatgtacCATAAAAATAACCGAATTACAAAGTAAGCTATCGATTAGAGTTAGCGGTCACTGGCCCCGCCCACAGCGGAAGTACtcttacaaaaataaagtgcgCTTCCAGCTGCTGCCTGAAGGAGGCGCTCTGCTCGCGTTTCATTGGCTCGGATTGAGGAAGACGCTCGAGAAGTCGACGCGTGACGTCTTGAACAGCTGGGGGAACTAAATGAACAAGGTTTGGCGCAAAACAAAGTTTTGTGCATTCGCTTTTTAAGATTACAATATGAAATCGACATTTACCGCGGTGTTGTATGCTTGTCTCTAGAATCTGTAAATCCCAAGGACGAGCCCGCTGTCATGTCACTGATTTATCAACTAACGTTACCGGACATTTAAAGATTGACACTTCGGATGTTAGAGATTCGTTTCTAATCTCGTTATGCGTGTTACTGATTCACGACTTTAGCAGAAACCCGCTTTAAAGGTGTTCTGAAACAGTGGAATGTGGAGAAGAGCGGCGGTGAATGGACCTTGGCTATCAATCAGATCACTGAACGCAGGGCGGCATGTCTCGTAAGTTGCACGCGAGAAGACTTGAAGGAATTGACAAGAATATATGGGTGGAATTTACTCAACTGGCTGCTGACTATAAGACTGTGAATCTGGGTCAGGGGTTCCCAGATTTCCCTCCTCCTGCTTTCATCCAGGAGGCTTTCTGCAAAGCCCTGAGTGGAGGTTTTTCCATGCACCAGTACACGCGTGGTTTTGGCCACCCGACTCTTGTGAAGATCCTGGCCAAGTTCTTCAGCAGGATTGTTGGCCGGGACATAGACCCGATGGAGGACATCTTGGTTTCCGTAGGAGCGTATCAAGCACTTTTCTGCACCTTCCAGGCTCTCATTGATGAGGGTGATGAGGTAATTATTGTGGAGCCGTTCTTTGACTGTTATCAGCCAATGGTGATGATGGCGGGAGGAACAGCTGTATATGTGCCCCTTAAACCGAGAAAAGGCTGTGGTCCTGTTCTGTCCAGTGCTGACTGGGTGTTGTCTCCTGAAGAGTTGGCGAGTAAATTTAACCCTCGTACCAAAGCCATTGTCATTAACACTCCTAACAACCCCCTTGGCAAGgtgttCCAGCGGGAGGAACTTCAGACGATTGCTGACTTGTGCATTAAACACGATGTCATTTGCATCAGCGACGAGGTGTACGAGTGGCTCACGTATGATGGAACAAAACACGTGAAAATCGCCAGTCTGCCGGGTATGTGGGAACGCACTGTCACCATTGGGAGCGCAGGCAAGACTTTCAGTGCCACAGGGTGGAAGGTGGGTTGGGCAATTGGATCAGGACATATCCTGAAACACTTAAAAACCGTCCATCAGAATTCAGTGTATCACTGTGCCACAGCTGCCCAGGAGGCCGTAGCGGTAGGTTTTCAGAGGGAGTATGATGTATTCGGCACAGAGGAAAGCTATTTCCACCAGTTACCCAAACATCTTCATGAAAAGCGACTGAGGCTGGCAGATTGTTTGAAGAGCGTTGGCCTGAACCCTGTACTACCCCAGGGAGGATACTTCATGATCGCGGATATCTCAAATATTAatGTTGATCTTACTGACCCTAGTACCAAAGATGAACCCTATGACCACAGATTTGTGAAATGGCTCATAAAAGAGAAGGGACTGGCCACCATCCCTGTGTCTGCATTCTACAGCCTGGAACACAGAGACGAATTTCAGAAATACATCAGATTCTGCTTCGTTAAgGAGGACTCAACCCTGCAAGCAGCAGAGGACATACTGAGGAAGTGGAGTGacggcaaataaaaatgaaacattctgACAGTGCAGGTCGTGCAAAGACCGACAAACCTGAAAAGCAAGAGATCTTGAAGCATGACGCATCTAAAATGAGTAGTTTGGGATACGAAcggtaattaaaaataaaagtgcttgtCATTAGGCTTAAGACCGACTATATGCTAGATGAACAGATGGTACTAATTGTATCACAAAACAAAGCTATGAAAATCTTGCGTGGCACGTGTGATTAAGAAAAGGAAATGAGAATCATTGTTCCTGTGATAACAATcgatataatgtaattttagtttcactataattttatgtttttggcaTCGTATTGCAACATATTTCCTTCCTCACTGGATTATACATcgaattgcattattattactgcATCCACTCCACATTACAAATTGCACATTAATAGATTTCATTTCATGttcaaactgttttattaatttgtgcaACGTAAGTGTTACGTTGAGCCAATTGCGTATAGAAATATTGCAAACTACCTCAAACAGCTTCATGTAAATCTGAAGGAACTTTCTTTATTGGTGGTCTAAACGCTCATCagttatgtactttttttggaCACATTTCTGCAAGAGAAAGCAAGTATTGTCACACACTAGTCTGTTTAAAAATGGACAAGTTACTCATTgcagtttaaatattaataaatccaAATTGAACGTA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function
GO:0016829 lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49676 lncRNA upstream 26488 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 35634 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 260631 6617276 ~ 6696642 (+) False dab2ipb
TU49605 lncRNA upstream 462743 6491552 ~ 6494530 (+) False G33665
TU49702 lncRNA downstream 18328 6980717 ~ 6981993 (+) False kank1b
TU49863 lncRNA downstream 171905 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 172518 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 182671 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 184646 7147035 ~ 7147616 (+) True G33853
XM_043239746.1 mRNA upstream 150 6954829 ~ 6957123 (+) True surf6
XM_043239750.1 mRNA upstream 5159 6949318 ~ 6952114 (+) True rpl7a
XM_043239749.1 mRNA upstream 11696 6943365 ~ 6945577 (+) True c5h9orf78
XM_043240067.1 mRNA upstream 41860 6866318 ~ 6915413 (+) False garnl3
XM_043239642.1 mRNA downstream 1548 6963937 ~ 6964497 (+) True ifitm1
XM_043239641.1 mRNA downstream 2760 6965149 ~ 6977675 (+) True prkaa1
XM_043238333.1 mRNA downstream 16166 6978555 ~ 6988772 (+) True kank1b
XM_043238334.1 mRNA downstream 18266 6980655 ~ 6988772 (+) False kank1b
XM_043238228.1 mRNA downstream 29833 6992222 ~ 6999388 (+) False LOC122344685
XR_006251122.1 other upstream 5544 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 5907 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 6515 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 6992 6950211 ~ 6950281 (+) True LOC122346219
XR_006251123.1 other upstream 7308 6949899 ~ 6949965 (+) True LOC122346228
TU49701 other downstream 16159 6978548 ~ 6981993 (+) False kank1b
XR_006251030.1 other downstream 324201 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 376079 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 376079 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 411517 7373906 ~ 7449497 (+) False LOC122345182

Expression Profile