RNA id: XM_043239750.1


Basic Information

Item Value
RNA id XM_043239750.1
length 860
RNA type mRNA
GC content 0.54
exon number 8
gene id rpl7a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6949318 ~ 6952114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcttcctttccgTCTGAACCAACATGCCTAAGGGAAAAAAGGCTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAGCATGAGGCCAAGAAAGTCGTGAATCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAAGACATCCAGCCGAAGAGGGATCTGACCCAATTCGTGAAATGGCCACGTTACGTCCGGCTGCAGCGCCAGCGGGCCATCCTCTATAAGCGTCTGAAGGTTCCCCCTGCAATCAACCAGTTCTCCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCCCACAAGTACAGGCCCGAGACCAAGCATGAGAAGAAACGGAGACTGCTGGCTCGTGCTGAACAGAAGGCTGCTGGAAAAGGCGACCAGCCCACCAAGAGGCCACCAGTCCTCCGCGCAGGTGTGAACACAGTAACCACACTAGTGGAGAGCAAGAAGGCACAGCTGGTCGTTATCGCTCACGATGTGGATCCCATTGAGCTGGTGGTGTTCCTGCCTGCTTTGTGCCGTAAGATGGGTGTCCCCTACTGCATCGTCAAGGGCAAGGCTAGACTGGGCAGACTAGTGCACAGAAAGACCTGCACCTCTCTTGCCTTCACACAGACCAACCCTGAAGACAAGGCAGCTCTTGCTAAGCTGGTGGAGGCCATCAAGACCAACTACAATGACAGATACGAGGAGATCCGTCGTCACTGGGGAGGCAATGTCCTGGGTCCCAAGTCGACTGCTCGCATTGCTAAACTTGAGAAAGCAAAGGCCAAGGAGCTGGCTACTAAACTGGGTTGAGCTgtcttgtttaataataaaaaattatccCACAAA

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
K02936 RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49676 lncRNA upstream 18533 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 27679 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 252676 6617276 ~ 6696642 (+) False dab2ipb
TU49605 lncRNA upstream 454788 6491552 ~ 6494530 (+) False G33665
TU49702 lncRNA downstream 28603 6980717 ~ 6981993 (+) False kank1b
TU49863 lncRNA downstream 182180 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 182793 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 192946 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 194921 7147035 ~ 7147616 (+) True G33853
XM_043239749.1 mRNA upstream 3741 6943365 ~ 6945577 (+) True c5h9orf78
XM_043240066.1 mRNA upstream 33905 6857880 ~ 6915413 (+) False garnl3
XM_043239746.1 mRNA downstream 2715 6954829 ~ 6957123 (+) True surf6
XM_043239740.1 mRNA downstream 5159 6957273 ~ 6962389 (+) True kyat1
XM_043239745.1 mRNA downstream 5159 6957273 ~ 6962389 (+) False kyat1
XM_043239741.1 mRNA downstream 5159 6957273 ~ 6962389 (+) False kyat1
XM_043239742.1 mRNA downstream 5159 6957273 ~ 6962389 (+) False kyat1
XR_006251060.1 other upstream 125014 6793365 ~ 6824304 (+) False si:dkey-34e4.1
XR_006251059.1 other upstream 125160 6793365 ~ 6824158 (+) True si:dkey-34e4.1
TU49600 other upstream 475127 6473347 ~ 6474191 (+) True G33664
XR_006250986.1 other upstream 694672 6247795 ~ 6254646 (+) False hexb
TU49351 other upstream 860756 6087262 ~ 6088562 (+) True G33494
TU49701 other downstream 26434 6978548 ~ 6981993 (+) False kank1b
XR_006251030.1 other downstream 334476 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 386354 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 386354 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 421792 7373906 ~ 7449497 (+) False LOC122345182

Expression Profile