RNA id: XM_043239813.1


Basic Information

Item Value
RNA id XM_043239813.1
length 9720
RNA type mRNA
GC content 0.47
exon number 48
gene id abca2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10469676 ~ 10524790 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCAAAGATCACAGACTTCGTGCAATCCTCGACAGCCTCAAAATAAAACGTGATCTCGACGAAGTCTGTCCAGCCAGGAGGGATCACCTCGGTCCCAGAAGTAAAGCTAAAGATGGTGAGATTAAAATGTTGCCACATCGATGGAGTTTCTAAAAATAGCCAGGCGTCGCAGAATGATGAGGATTCAGCAGCGCATCAGTAATCCAGCTGAGGCAGCCGCTAGATTGCCATAAAAATCACATCTGATCTACCTGACACATCGGTCGCTCCCTCAATGCGCTCAAGTTACTATAGCAATAAGAAACGTTCGTTCGCTAGGTTTGGCTGAAGCTGGCGGGAGTATCTCCGCCCACTGCTCAATGAGATGCGAATATCTACATCTGCTGCTACCAAAAGAGCATTTTGTTCACAAACCCAACCCTCGTAATTCAGGATGTTTGGCTTTGTCACACGCCGGGGAGGACAAAATGCAGAGGGAGCGGAatctcaaaacaacaacaacactgtgatgaatatattataatttgcGACTTCATTCTCCAACTCATCGAAAATGGGATTTCTTCACCAGCTGCACCTTCTTCTGTGGAAAAACGTGACTTTGAAGCGCAGGGGACCGTGGGTTCTTGCATTTGAGATATTCATCCCTCTGGTGCTCTTCTTTATACTTCTGGGCTTGCGGCAGAAGAAGCCAGCCATTCCTGTGAAAGAAGTGTCCTTCTACAGCGCGGCCCCTCTCACCTCGGCGGGCATCATTCCCATCATGCAGTCTTTGTGTCCGGATGGTCAGCGGGATGAGTTTGGCTTCCTGCAGTATAAAAACTCCACTGTGACTCAGTTGTTAGAAAGGATCAGTGAAGTCGTGGAGCAGAATCACTTGTTTACGTCAGACAGACCCAGTCTGGGAGAGGAGCTGGAGTCACTGCAGCAGCACCTTGAAAGTCTGAGCTCAGCACAAGGCCCTCTAGAGAGCCACTACAACAACAGCCATGGTTTCACTGTGGGAAGTGTCCTCAGGAACCAGTCGATGTTTCAGCAATTCCTGAGCAGAAACCTTTCCCTGCCAAACGACACCGCCAGCCTGCTGCTATCCTCCCCCATCAACCTGAAAGAGGTGTATAATCTCATCTTTGGGACGTATCCTAAAGTGGGATCAAAGGTAGGAGAGAAAGATGAAGGACAGCATGAGCCCCACAGTCCTGGAGAGAAGCTTGTACAGCTCGAGTTACGTCTGGAGCAGTCCAACATATCCGGTCTTTTGGATCAATCCCATCTCGGCGCTTTACTGAAGAACCTGGCGGATGTAGAACGGCTCTTGAGGGATGTGGATTTGCTGTCAGGTCTGGCCAGACTGCTCCCTAAAGGGGCCTGCGCAGGCCACCAGCCTCCTCCTGTAGCCAACACCACCTCTTGGAGCTCTAACACAACAACATGGGGATCCAACACAACAGACAGCCCTGTGGAGGAAGGAGAGGGAGCAGCAGGAAATGAGGCAGAGGCTGACAACCCTAGATCACAGTTTTCTGCCTTTGTTCAGCTGTGGGCAGGTCTTCAGCCCATTCTTTGTGGGAATAACAGGATTATTGAGCCAGAAGCTCTGAAACAGGGCAATATGAGTTCCCTGGGCTTTACCAGCAAAGAACAAAGAAACTTGGGATTACTTGTCCATCTCATGACTACAAATCCAAAAATCCTCTACTCTCCCATTGGCTCAGAGGTGGACAAGGTCATACAAAAGGCCAATGAGACGTTTGCTTTTGTGGGGAACGTGACTCATTATGCCCGTGTGTGGCTCAACATCTCCGCTGAATTAAGGGCTTTTCTAGAAGAGGGTAAATTGCACAATCACCTGATGTGGCTCCAGCAGTTCATTGCAGACCTGAAGAAACACCATGAACTGTTGAACGTCTCAGACAGCGAGCTGATGAACAGTCTGCTGGAGGAGAACTTCACCCTGCCAAACACAACCACTCTACTGGAGCAGCTGCACACCATTGATAATGCTGCCTGTGGTTGGACAAACTTCATGTCAAAGGTCAGTGTGGATATCTTCAGAGGTTTCCCTGATGAAGAGAGCATTGTCAATTACACGCTGAACCAGGCCTACCAGGATAATGTCTCAGTCTTTGCAAGTGTGATTTTCCAGGCCAATAAAGATGGATCTTTGCCACCCCATGTTATGTACAAGATTCGACAGAACTCCAgcttcacagagaaaacaaatgaaattcgCCGAGCTTATTGGCGCCCTGGCCCGAACACGGGTGGCAAATTTTACTTCCTTTATGGCTTTGTGTGGATCCAAGATATGATTGAGCGGGCAATCATCAACACGTTTGTGGGCCATGATGTTGTTGAGCCTGGAAACTACGTGCAGATGTTTCCCTATCCGTGCTACACTAGAGACGATTTCCTGTTTGTTATCGAGCACATGATGCCTCTGTGCATGGTCATATCCTGGGTCTACTCTGTGGCCATGATGATCCAGCACATTGTAGCAGAGAAGGAGCAAAGACTGAAAGAGgtgatgaagatgatgggCTTGAATAATGCAGTGCACTGGGTGGCTTGGTTCATCACAGGTTTCGTGCAGCTTTCGATCTCAGTGACGGCTCTCACTGCCATACTGAAATACGGCAAAGTCCTCCTCCACAGTGATCCATTTATCATCTGGCTCTTCCTCACTATCTACGCCGTTGCCACCATCATGTTCTGTTTTCTTGTGTCGGTGTTGTACTCCAAAGCCAAACTGGCTTCAGCATGTGGAGGAATCATCTACTTCCTAAGTTACGTGCCGTACATGTATGTGGCCATAAGAGAAGAAGTGGCTCATGACAAAATCACTGCCTTTGAGAAGTGCATAGCGtctTTAATGTCTACCACAGCGTTTGGTCTGGGATCTAAGTACTTTGCCCTGTATGAAGTTGCTGGGGTTGGAATCCAGTGGCGTACCATCAACCAGTCACCTGTAGAGGGGGATGACTTTAACCTTCTGCTTTCTATGGTTATGCTCACCATTGATGCCATTGTATATGGTGTACTGACCTGGTATATAGAGGCTGTGCATCCAGGGATGTACGGACTGCCCCGGCCATGGTATTTTCCCTTGCAGAAATCCTATTGGTTAGGAAGTGGCCGCATAGAGACGTGGGATTGGCCCTGGGGTGGCAGCACCAGGCTGAGTGTGATGGAGGAGGACCAGGCTTGTGCTATGGAACACAGACGTTCAGAGGAAACTCGTGGAATTGAAGAAGAACCCAGTCACTTGCCACTGGTGGTATGCATAGACAAACTAACTAAAGTCTACAAGACAGGCAGCAAGCTGGCCCTAAACAAGCTGAGCCTAAACCTGCACGAGAACCAGGTTGTCTCCTTCTTGGGACACAATGGGGCTGGCAAGACCACTACTATGTCTATACTGACTGGATTGTTTCCACCAACCTCTGGCTCTGCCACCATATATGGCCATGACATCCGCACAGAGATGGAGCGCATCAGGCAGAATTTGGGCATGTGTCCCCAGCACAATGTTCTGTTTGATAAGCTCAGTGTGGAAGAACATCTGTGGTTTTACTCACGTCTGAAGGGCATGGCCGAGGAAGATATCCGGAAGGAGATGGACAAGATGATAGAGGATCTCGAATTGTCCAACAAACGTCACAGTCTGGTCCAGACTCTGTCTGGGGGAATGAAGAGGAAGTTGTCGGTTGCAATTGCGTTTGTAGGTGGGTCCCGGGCGGTAATTTTGGATGAACCCACGGCTGGAGTGGACCCGTATGCTCGCCGAGCAATCTGGGACCTCatacttaaatataaacaagGTCGCACTATCCTGCTCTCTACTCACCACATGGATGAGGCTGATTTGCTTGGAGACCGTATTGCTATCATCTCACATGGCAAACTCAAGTGCTGCGGTTCCCCCCTATTTCTCAAGAGCACATATGGAGACGGCTACAAACTTACACTTGTCAAGAAACAGAGTGACTCACACACTGCAGATCAGTCAAGCCAGTCTCCCGCCTCTTCCATATCTCCATGTTCAGAGAGCAGAGTGACACAGTTCATCCGTCAGTACGTTGCCTCCTGTCTGCTTGTGTCCGACTCCAACACGGAGCTCTCTTATGTCCTGCCGTCTGAGGCTGTCAAGAAAGGCTGTTTTGAGAGGCTGTTTCAGGCTCTGGAGCAGAGTTTGGACAGCTTGGCCTTGACCAGCTTTGGTGTGATGGACACCACGCTGGAGGAGGTATTTCTGAAAGTATCAGAAGAAGATCTTTCATTGGAGAACAGCGATGCAGATATGAAGGACTCTCCTGGTGGAGCATCAGCTGGGAAGCCCTCTAATCTGTTAGGAGGACCACAGTGTGAGGGGGCACCAGCTGCTGCTGTGATCCGGCCAGAGGTGGAGCTCAGTAACCTGATGATGTGCTCCAGGCTGAGCCCAAGCCAAGCATCCTTACAGTCCGGTTCTTCTCTCGGCTCAGTGAGAGGGGATGAAGGGGGCCTTTATTCTGACTTCTATGGAGACTACTGCCCATTATTTGACAATGGCCAGGACCCTGACTCAGCCAGTCTCAGAAATGAAGAGTCCTCTCCGGAGCCGACCATACACGAGGGCCAGGGCAGCTTTAAGCTTGAGGGCTGGTGGCTGAAACTCCGGCAGTTTCACGGGCTGATAGTGAAAAGGTTTCACTGTGCAAAGAGGAACACCAAGGGCATTTTCTCACAAATCCTATTGCCTGCTTTCTTCGTCTGTGTGGCAATGACTGTAGCTCTGTCTGTGCCTGAGATTGGTGACCTTCCTCCGTTGATTCTGTCTCCATCTCAGTATCACAACTACACACAGCCTCGTGGAAACTTCATCCCTTACGCCAATGAAGACCGGCTTCAGTACAGGAGTAAACTTTCTCCAGATGCCAGTCCGCAGAGGATTGTTAACACCCTTCGTCTACCCTCTGGAGTTGGTGCGACATGTGTACTGAAAACTCCCTTCAACAGCACACTGGACCAGCTGGCCCAAACCCTAAATCCATATGCCAACAACTCCAAAACTCTAGCAGCCCGCTACTTTGACTCTATGTGCCTGGATTCTTTCACACAGGGTGTGCCTTTATCAAATTTTGTGCCCCCGCCTCCTTCTCCTGCCCCCTCAGATGACCCAGATGCACATTTTGAAGATGGCCTTTGGAATTACACTGCTGCTCCTCCCACAActgtcagagAGATGGCAACGTCTCCCCCCACGCTGCCCTTGACCATCCGGGAGCCAGTGCGCTGTATCTGCTCCATGCAGGGCACGGGCTTCTCCTGCCCCAGTGGAGTTGGGGGTCGACCGCCCCTTATGAAGGTAGTAACTGGAGACATCTTGGTGGACATCACAGGTCGCAACGTGTCTGAGTATCTCCTGTACACCTCTGATCGTCTCAGATTACACAGATATGGAGGCTTTACTGTAGGAAACATTCAGAAATCCGTCCCAGCATCCTTTGGGAGAAAAACACCACCTATGGTGCGCAAAATAGCAGTGAGGAGATCCTCACAGGTGCTTTACAATAACAAAGGATATCATAGTATGCCTACCTACCTAAATGTCCTGAACAATGCCATTCTCAGAGCCAATCTGCCCAGTAGTAAAGGAAACCCTGCTGCATACGGCATCACAGTGACCAATCATCCCATGAACAGAACCAGTGCCAGTCTTTCTCTGGATTATCTGCTCCAGGGCACTGATGTGGTTATTGCCATCTTCATCATTGTAGCCATGTCCTTTGTGCCAGCAAGCTTTGTGGTCTTCCTGGTAGCAGAAAAATCCACCAAGGCCAAACACCTGCAGTTTGTCAGTGGATGTGACCCTGTCACTTACTGGCTAGCTAACTACATATGGGACATGCTGAACTACCTGGTTCCAGCGACGTGCTGTGTCCTaattctgtttgtgtttgaccTTCCTGCGTACACGTCACCTACAAATTTCCCAGCagtgctctctctcttcctcctttaTGGCTGGTCTATAACCCCCATTATGTATCCAGCCTCTTTCTGGTTTGAGGTGCCCAGCACAGCTTATGTTTTCCTTATAGTCATCAATCTCTTCATTGGCATCACAGCCACGGTGGCCACTTTCCTCCTACAGCTGTTTGAGCGTGACAAGGATCTAAAGTTGGTAAACAGCTATCTAAAGTCCTGTTTTCTCATCTTTCCCAACTATAACCTGGGTCATGGATTGATGGAGATGGCCTATAATGAGTATATCAATGAGTATTATGCCAAGATAGGCCAGTTTGATAAGGTGAAGTCTCCATTTGAATGGGACATTGTGACACGGGGACTGGTGGCAATGACCATTGAGGGTTTTGTTGGCTTTCTCATTACAATTCTGTGCCAGTACAACTTCCTCAGGAAAGCCCAGAGAGTGCCTGTCAACAGTCAGCCGGTTGAGGACGATGATGTTGATGTGGCCTGTGAGAGACGCAGAGTGCTGAGGGGAGATGCTGACAATGACATGCTGAAGATCGACAACCTAACCAAGGTGTATAAGTCTCGCAAGATGGGCCGGATCCTGGCGGTGGACCGTTTGTGTCTGGGGGTCCGTCCTGGGGAGTGCTTTGGGCTGCTGGGAGTGAATGGAGCAGGAAAGAccacaacatttaaaatgttgacagGAGATGAGAGCACAACAGGGGGCGAGGCCTTTATTCAGGGACACAGTATCTTACGGGAGCTTTTACGTGTGCAGCAGAGCATTGGTTACTGCCCTCAATTTGACGCTCTATTTGATGACCTGACTGCTCGAGAACATCTGGAGCTGTACACACGCCTCCGTGGCATCCCCTGGAAAGATGAGGAACGGGTGGTTCAGTGGGCTCTGGAGAAGTTGGAGTTGTCCAAGTATGCTGACAAACCTGCTGGCACCTATAGTGGAGGCAACAAACGCAAACTCTCCACAGCTATTGCTCTGATTGGATATCCCTCACTCATTTTTCTGGATGAGCCCACCACAGGTATGGACCCAAAGGCTCGTCGTTTCTTATGGAATCTGATTCTTGACATCATCAAAACCGGACGCTCTGTGGTGTTGACGTCACACAGCATGGAGGAGTGTGAAGCATTGTGTACGAGACTGGGCATCATGGTTAACGGCAGGTTCAAGTGCCTGGGAAGCATCCAGCATCTCAAAAACAGaTTTGGGGATGGATACATGATAACAGTACGCACTAAGACCACAGCTAGCGTCAAGGAAGTGATACGGTTTTTCAACAGGAATTTTCCAGAGGCCATCCTTAAGGAGCGGCACCACACAAAGATTCAGTACCAGCTGAAGTCAGAGAACATCTCTCTGGCTCAGGTCTTCAGCAAAATGGAGCAGGTGGTCGAAGTGCTGAGCATCGAAGATTATTCTGTCAGCCAGACAACTTTGGACAACgtcttTGTCAACTTTGCAAAAAAGCAAAGCGATAACTTACAACAGCAAGAAAGTTCCCCATCTAGTGCTGGTCAGTCGCCACTGCAGAGGCTGCTCAGCATCCTCCGGCCGCGTCCTGCTAACACAGAACTTAACGCCCTTGTAAGTGAAGAGCCAGAAGAGCTTGAGAGTGATGACGATGAAGGACTGATCAGCTTTGAGGAAGAGAGGGTGCAGCTGTCTTTTAATACAGACACTCTGTGCTGAAACAGCTGTTAATCTCACAGACGGagagatgttaaaaaaaaaaaaaaaaaaaagcctcaagTTCAGACCCGTGTCTGTACGGTCAAAGACATTTGTgcgtttttttctctctggaGAGGATCCGTCTCTCTGGCCCAGAGAGTGGCTTGTTCTTGTTTCCATTTGCACTTCCAGTAGCGGAGCGAGAGAACGGCTCTTCTGGGAACTCTAACAGAGATGCAGACACAGTCGGTGCCTGGACGTGATCGGGCCTCCCCTCCTGCGTTTTGGAGATGATGGCTTATGGAATCGTGTATTACCATACTTTATATTCAAGCCTGCTGGATGGGAATTAAAGAGAATGTATTTCTTAGATAGGCTATGGCCGTATGGTTTATTTTGGTATCGCTTTACATTTGAATATGATCGTACTATCGGATCACGttgaattgttttaattgtagTGTTGATGTCATAACATAATCATCCCTCAAGGAATAGGACTCTTATGGGTTCGGCCTCTGCAacttgttcttttatttttatgactgtTTACCTTCACGTTGAGTTGaaactgatcttttttttctttacttggACCTACTGTTTGATTTGTACCTGCATTGAGAGCATGCTATAAAAGACAAGCCTGTCGTGTTGTGGGTTGAAGAACTTTTACTATGCTTAAATGTTTCGAACAGACCTGTTGTTCTTGTTGAAGAATGCAAATGTACCCGTGCACCTTCATTGAAGTTTTGAAATCGGACACATCGATAGTGAATGACCCGTGACCGATTCAAAGGCCTTTAGTCGAACCGGACCGAACCAGCCCTGCTGTGGAGATGTTTGTGGTCTTGTAATTGAATGTAAACGGCATACGTGTTTTGTGCTGACTTTGTGTCTCCCGAACCAAGGGTTCtctcttttatttaatgaatgcattctGAAATAAGTTGTAATTGATTCCGGTGTCTGTCTCGGTGGAAAAATTTGCGTTGCATTACGGTCAAAAGCCGAGTAATTCCAGATGTCAGTTGAAAGAGCTCCTACACCAGATGTCAGTAGAAAGTTCATAATAATTGTCACGCTATCACTGTGAAGCCAAAGGTGAACTCTTAGTCACTATTAATACAGATAGACAGAAATCAGGTCATTGCTATCGATTACTGTATTCATGAGAACCcttgaaatgtttgtttattgaatAGCAGGAGGTTTTGACTTTTTGTCGTTTGCACTGTAATGTAACGCAAgtgtacatttttctgttttgaccTGAAATTAGTCGATCATGTTGTtccttttgaaatgaaatgatgctTCTCCTTCATGTCAGTGATGTACATGATGGTTAGGTCCTATCGCTCAGTGACAGTCTAACCGTGCTTAATCTCTGAATCTCGCACAGTTGTCGGCACTTAGTACTATAATGGTGTCTTATTTTTCTGGCATTgctgcgtaaaaaaaaaaaataggatcaATATTATCAAAGAGAAGAAAGCTGAGACCGATAAGGAGGCCCTCTGTACATTTCCGTGTACTACGACCAAAGGgtttttgaaatgtgtaaaTTTAATTGTGACCAGCTTTGTGAAAACTGACCTACTGAACACATCTTTGCGTAACGATCGGGCATCTGGGCCACTTCTGAATATATTTCCTGCTAACGGAGAACCTCAACAGCCTAACTAAAGATCAGTGCAAGCTGCTTTTCACTTTGGAAATTAACATGTGCAGTGATTTAAGACACCAGCAAACATGAGTGTGGTTCTGTATCatataaaatagcattatgGTTAAGGAGGTGATTTAGTTTTATCTTTCTTGTAAGTGCGTTGGAATGTAAATTCAGTACATGTGAATACGATTCGATATTTATGAACGTTTTATTTTCATCCAGTAATACCTGTGTTCAGGTGGATTCCCTTGTAACAAGATTGACTGGACCTTTTCGGCTTGTTTTCAATTACTTTTGTTTCCATAATCTTGTGCTAACTGGGGTGAActgatgtttttaatattaaaagggagaaaagagaaaaattaaatcaataaattgttaaattga

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51632 lncRNA upstream 135868 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 139354 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 142215 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 142962 10325866 ~ 10326714 (+) True G35040
TU51492 lncRNA upstream 177815 10288424 ~ 10291861 (+) True G34959
TU51689 lncRNA downstream 22431 10547221 ~ 10547625 (+) True G35081
TU51833 lncRNA downstream 288667 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 313222 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 420266 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 612262 11137052 ~ 11147242 (+) False LOC122346180
XM_043238899.1 mRNA upstream 35983 10408635 ~ 10433693 (+) True rorb
XM_043240706.1 mRNA upstream 108609 10342197 ~ 10361067 (+) True mfsd3
XM_043240707.1 mRNA upstream 108609 10342216 ~ 10361067 (+) False mfsd3
XM_043240819.1 mRNA upstream 128556 10337223 ~ 10341120 (+) True anxa1a
XM_043240832.1 mRNA upstream 145041 10319685 ~ 10324635 (+) False LOC122346143
XM_043239817.1 mRNA downstream 2300 10527090 ~ 10531080 (+) False dph7
XM_043239816.1 mRNA downstream 2302 10527092 ~ 10531080 (+) True dph7
XM_043239818.1 mRNA downstream 2685 10527475 ~ 10531080 (+) False dph7
XM_043239815.1 mRNA downstream 8397 10533187 ~ 10546933 (+) True pnpla7b
XM_043239680.1 mRNA downstream 28185 10552975 ~ 10608867 (+) False emid1
TU51450 other upstream 351550 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 670318 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1598158 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2165525 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2459077 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 204328 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 402033 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 521690 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1399438 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1724348 12249138 ~ 12255672 (+) True G35720

Expression Profile