RNA id: XM_043239829.1


Basic Information

Item Value
RNA id XM_043239829.1
length 4863
RNA type mRNA
GC content 0.44
exon number 11
gene id traf2a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9008526 ~ 9016381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTACCATCCATGAGCAGCTGAAGAGAACACGACGCCTAACGTTACTCACATTTTTAAGAAacactatatattattattattaataataataaattatgaccATGCTTATGACTGCATACGGCAAGAACGCTGAATGTATCTGATACAATGTTTCACAGATCTGCAGGAGGTTTTATAATGTTCGTTGGACCATAATATGTGAAATGTGTAGAAAGATCCGTGTCTCTTCTCCGGAGCCTGGTCACATGCGCGCTCGGGAATAATGGCTGCACAGGAACCCTCACCACCATCTTCATTAGAAGGCAACAAACCTGGCTTCCCCAAGAAAATACTCGCCAACAAGCTGGAGGACAAGCATCTGTGCAATATCTGTCTGAAAATCCTTAGGAGACCGTTTCAGGCGCAGTGCGGACATCGTTTCTgttcttattgttttaataaagcagTGAGCTCCGGACCACAGAAATGCAGTGCCTGTATAAAGGAGGACATATTTGAAGAACCAACATCAATATTGAAACAGGGCTGtgcTTTTCCTGACAATGCTGCCAAAAGAGAAGTAGAAGCTCTTGAAGCTGTTTGCATCAATGAGGAATGCAGCTGGACCGGCACCATCAAAGAATATGAGGCAAACCACGAGGGAAAGTGTGACTTCAGGATCCTTCCCTGCCCATCATGCAAAGAGCTTCTGAGAGCCAATGAACTTGAACGTCACAATGAGAGAGAATGCCCAGAAAGGACTCTTAATTGTAAATACTGCAAGGagccatttcattttaaaaacattaaggCCCATGATGAGATATGCCCTAAATATCCAATGATATGTGAAGGCTGTGCCAAGAAAAAAATCCCCAGAGAGAAATACGTGGACCACATTAAACTGTGCACCAAATTCAGAACACCTTGCAGATTTCACGTCGTAGGCTGTGATATGACGGTGGAAAAGGAGAAGATCCACGATCATGAGCAAGCCTGTTCCTACGAGCACTTAAACCTCCTCTTGCACTTCATCATGGGAATCAAGGTGAACTTGGAGAGTCTGCAGCCTCAGAGTCTGGAGCTGGCCAGCCATAAGATCCACGAGCTGCATCAGTCTCTGCGGGAGCTGGAGCTAAAGATGGGCCAGCTGAGTGGAGCAGGGGCTCCCGTGCAGGGGGCCTGTGCGCCGCTGCCACCACCTCCGGCCCCGACGCTGGGTACATCTTTCACCCCGCTGCCTACAGCCGTCGGGGCAGCCTTGGAGCTGCAGCTACACAGTGAGAAGACCAAAGTGGTAGAGCTCAGCCGTCGCTGTCAGGAGCTGGAGCTGAAGGTAAGCACCTTTGAGAACATCGTCTGTGTGCTCAACCGTGAGATGGAGCGCTCTGCCACCACCATGGAGGCCTATAACCGTCAGCACCGGCTTGACCAGGACAAGATTGAGATACTCAACAACAAGATTTTTATGCAGGTACGGCAGTTGGAGAGGACAGTTGGCCTTAGGGATCTCTCCATCGTGGAGATGGAGGCAAAGATGAGGGAGATGTCTGCTGCCACTTATGACGGTGTATTTGTGTGGAAGATCTCTGACTTCTCGAAAAAGAGACAAGATGCTGTGGCCGGACGGGCACCTGCTATGTTCTCACctgCTTTTTACACAAGCAAATATGGCTATAAGATGTGTTTGCGCATCTATCTGAATGGGGATGGGACGGGACGGGGTACTCACTTGTCTCTGTTCTTCGTGGTGATGAGGGGACACAGTGATGCCTTGCTTAAGTGGCCTTTCAATCAGAAGGTCACCCTCATGTTGCTGGATCAGAACAACAGGGAGCACATCATCGATGCCTTCCGGCCAGacatttcctcttcctccttccAGAGGCCTGTGAGTGACATGAACATTGCCAGCGGCTGCCCTCTCTTCTGCCCTCTCTCCAAACTAGACTCCAAGAACTCCTACATCCGAGATGATACCATCTTCATCAAGGCCATCGTTGACCTCACAGGCCTTTAAGGTGTCAGATGCCGCTGCTCCGCCATGCTCCTCCTCTCTCCAGCCTGTAGTGGTTCCCGTGCAGTACTTTTTTTCCTGAGGCCTGTTCCCTCGGTCCGAGCTCTTTGCCGTGCTCGTGTGAGCCCAAAGAGACTACGGTACCCAGTGCAATACTGCGCTGGGCGCGACACCACTCTGCATTATGTACCAAAATCGTTCCCAGAGTTTGTGCAGTTCTACTGTAATATAGTTGCCCTTTGGGAACCTCTCACTCTCTTGTAGTGGGATAGCTGTCAGCTGTGATTGTAACGTAACTACTTGCCTGTGCCATAGACGTGGCACCTTGCCTTTTATAGAGATTGAGAAGACTTTCTCCACAAGACAGACGTCATTTCATTTCCAAGCGCTTGGCTTGTGTCGCACTCACTATTTAGGTActtttttgctttccttagtGTTTGAGCTACTTGTAAGTGAATGTTTCGTGCGTAGACGGACACGGAGTCACACTAACGAATGATGTCTGACATTCCCTTTGAGCATCGTGTGCCTCGAATGTTTCTCGTTTTCATTGGCTCTCTGTAGTGGTGGACATTGCTTGAATTTAAAGTGCAGAATTTGGGTTTTGATAACCTGCTTGTGAGCTGAGgagtttgttgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgaaGGTGTGATCTGTTTTTTGGCCTTCGTTTCCATTTTCGGTGTTCTTTGATGTATTAGTTTGCATGTTGGATCTGTGGAAGATACATTCAAGTTAGCAGCAGACCAGGTTTACACCCTGAGCCTGAGAAGTGAGGGCAGTTTCATTGTAAAATCGCTGTCGAACGAAAACAACCACATCATGCTGGTGTTAAAACCATCCAGTTTTCCTTTGGACCTCAAATGCCTCTTCAGCCGACGTGGTTATACGCGAATAAAAGATGCAGCCTTTAGCCTAAAGGTAGTGTAAGTAGGACAGGTAATCTCGTGTGCTTTATTGTGACGTGGAAAGGCTGATGTTTGTTagcattttgatgttttcttgtgtttttgggTGTTCCGTTGATATTGTGCTGCTTTGGGCAAACATTATGGATGCCATTAAAACTATATGACTTGCTTTGGACCGTGTCGATCAGTATAAACCAAGCAGGTGTTTGAGAACTCGTAGTCAGTGATTCCTGTCGTCTTTTTCCCAGAAAGACTGTGGGGTTTGCATTCTGTAAATGTGCTAGAAAATGAGGAATGTGATTTGTTATGCCATTTTGAAGTAGCCTCAGTCCTTAATAGACAGTCAGTTCAAATGCATTTAGTCCGTGGgatttcttttggtttatttgCAACCAGAGAAGGCATTACTATACATATACAATGCATAACTCCTACATAAGGGCTTTTAGTATACAGTACGTCTTCCATGTGAGCTTTTTGGTCTGGTTATTTTCTCAAACCGAGTCTGAGATGCTTTTTTTAAGATGCCTTCACGCTAACAAAGCACCTGGACCCAGCCTATTTTCAAACCAGTTCCCACAGATATCGAAACCTCTCTGTGCATGAGATGTTTTGatagagaagaagaagaagaaaaaaatacatatcgTAATTTATTGGTTTACTTTGTAGaccaacattttatttgtattgctttacattttttttatctgttgatTGAGATGCAGTATATGACGGTTATAAATGTGAGTGTGGTATATTGTTAATTTAAGTATAAATAGATAACCTATACGGCGTACACGGTTTTTACGACTGATGTAGCTGTGGATATAACAAATAtgaatcataaatatatatatatatatcatagatTTATATCGATAATACATGTACTATTTCCTGTTGGGATGGTTTCAAAATGTGTTCGGGCTCTTTTTGGGCTTTGGTAAGTTCTCCTTCACTTTGGCAGCATCCCTTGAGGGAATGAGATTCTGAAAGATCTTCCggtttttcctctctctctcaagaACCTGTCTACATGAATAAATCTCACCGTCGTAGATTTCCTTGCTTGCTTTTTGCCCCAATGAGATTTCAAAGTACTTGTGTGAATAGCTCTACAGATGTGATGTGCCTCTGTAGCATAACCGCTTCTATACAAATGTTCTCTATACATAGCTTTAGCTAACATTGCATGTGGCCAGAGTGTTGTATTGTAAATCATATAATATTCTTTAAGAGTTTCGGAAAACACTTTTTAGTTTTGCCTATTATTTGGAGTAGATATCACATGATTTACTAGTAGTAGTGCACACATTTTAGCTTGTGCAATTATACAAGTGTCCTTCCTGTTCTTGAGTGTGAAATCTACTGTTTGCATTCACTCGATCTGGGCTCATGTTCATACGCTGAAGAGGTGAATAGGTGAAATGCTTGACCTAACGTGGGTGAGAGCCCCCTTTATCTGTAAGAAATAATGTTGACTCTGACTCTGACTtgcgttttatttttggataagCATACACTTACACTagaaatatgctattttttaagtttttgcaTACCGTTGAGATTAAAACTCGCAGAACTAATAATTTATGGAATCCAggactgatttttttcttcttcagctgACTAAGatttgtatactttttatttctgaGGTTGCATTTCATAGAGGTTGCTTTAATAATCAGACTTTCTACATAACTTTGTATGCCTTTCTCATGGTGTCTCAGTGCCACTGATCTTCCCGATTCTGTTTTACAGAGCTAGAGATGTTACTGTGAAGGCACTGTAGGTTTCTTCCGCAAATTGTGGTGATCAATGTGCCAAGGAAGGAACCTCTGTGTGATTCATCTTGTGTTATGATTTAATTCTCAGTGAAATCTAAAATAAAGGCTTTTCTGTTCTCCTTTCTCCA

Function

GO: NA

KEGG:

id description
K03173 TRAF2; TNF receptor-associated factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50809 lncRNA upstream 7306 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA upstream 7306 8993896 ~ 9001220 (+) False G34480
TU50811 lncRNA upstream 7306 8995398 ~ 9001220 (+) False G34480
TU50814 lncRNA upstream 7306 8999260 ~ 9001220 (+) True G34480
TU50798 lncRNA upstream 69156 8938265 ~ 8939370 (+) True G34472
TU51097 lncRNA downstream 230529 9246910 ~ 9248013 (+) True G34689
TU51096 lncRNA downstream 231878 9248259 ~ 9251790 (+) True G34688
TU51161 lncRNA downstream 344478 9360859 ~ 9433507 (+) True G34725
TU51186 lncRNA downstream 462224 9478605 ~ 9565907 (+) True G34747
TU51300 lncRNA downstream 748755 9765136 ~ 9765347 (+) True G34840
XM_043240274.1 mRNA upstream 17503 8972917 ~ 8991023 (+) True npdc1b
XM_043240275.1 mRNA upstream 17503 8972919 ~ 8991023 (+) False npdc1b
XM_043240270.1 mRNA upstream 36458 8950384 ~ 8972068 (+) True niban2b
XM_043240078.1 mRNA upstream 70454 8886982 ~ 8938072 (+) True whrnb
XM_043240079.1 mRNA upstream 122662 8878270 ~ 8885864 (+) True noxa1
XM_043240196.1 mRNA downstream 56399 9072780 ~ 9104866 (+) False tncb
XM_043240195.1 mRNA downstream 56400 9072781 ~ 9104866 (+) True tncb
XM_043240197.1 mRNA downstream 56400 9072781 ~ 9104866 (+) False tncb
XM_043240198.1 mRNA downstream 56400 9072781 ~ 9104866 (+) False tncb
XM_043238680.1 mRNA downstream 89119 9105500 ~ 9107204 (+) True b3galt8
TU50789 other upstream 137008 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 704375 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 997927 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1210558 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1441950 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 780009 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 1047836 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1712737 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1910442 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 2030099 11046480 ~ 11062314 (+) False map7d2a

Expression Profile