RNA id: XM_043239842.1


Basic Information

Item Value
RNA id XM_043239842.1
length 5895
RNA type mRNA
GC content 0.44
exon number 27
gene id ube3b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5653575 ~ 5666827 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGATTAGAGCTGCGGTGTCTGGGACGCTCTTTTGTTTACATCAGTTTTCAATTTATTCTCAAACGCTCAGGTAAACGAAACCTTCCAGAAAACCCTAAAGACTTTCTTTGCTTTTCAACCGAAACACAAGTATCAAGTGACAACATTTCCCAAGCGTTGCCAGCTCGCTGAACGCCGCAACTGTAGTCCAATGGACCTCCAGAACgaaaaatgttaatatgtgATAGCATTCATGTGACCCGTGGAAGCAGAAGTATTACCAGTCACTACATTAGGTCAAgTTTGGAGTGAAAACATGTTCACTGCTACCCAAACCTCCAAATCCCAGTTCCTGGATAAAGCCAGGATAGCGCGGGAGGAAAGGAAAGggtataaagagaaagaaaaagctgCCACGCAAATCCAGGCTCTGGTCAGAAGGTTTATCTGCCGTTGCAGACTGCAAAGAGAAATAAGGAAGGAGGTCGACGACTTTATTGCAGTCAGCGATGCAGGTTCAACAAAAAGAAATGCGTTGTCCATCTTCAAAATCGctagaaaattattatttatattgagCAAGGAGGATAAGCTGAGGTTTGAGAAGCTATGTAGAATCATACTTAGCAGCATGGATGTGGAAAATGAACCTAAAGTATGGTATGTATCCCTGGCTCTTTCAAAAGATCTTACCATCCCCTGGCTGAAACAGATTAAAGATGTGCTCTGGGTCTCTTGTGAATTTCTGAAAAAACTGAAGCCTGACATACTGCAAGATAATAAATTGGTGACACTGTACCTGACAATGCTGATAACCTTTACTGACACGTCCACATGGAAAATCATCAGAGGGAAGGGCGAGGCCCTCAAGCCTGCTTTAAACAGAATTTGCGAGAACATCATGGGACATCTCAATCAGAAGGGCTTCTACTCTGTTCTTCAGATTCTACTTACAAATGGATTGGCAAGATCCAGACCTTCCCTTTCCAAAGGAACCCTCACGGCCATTTTTACGCTGTCACTCAGGCCTGTTATCGCTGCACATTTCTCAGACAACCTGCTGAGGTCTTTCCTTCTCCACATCATGTCTGTTCCTGCGTTCATCTCGCACCTGAACACGCTCACTCCGGATTGCATGATCACTATCCAAACCCATGACCTTTTCCGCaagtttgtcttgtttttaagtCGAGAGGAGCAGTGCTTGGATATCTGTGTTTGTCTGGAGGGAAGCCACACTCTCTGCTTGCTGGGTAACCTCATTCAGCTGGGATACTTCAATGTAAAAGTTCTAGAGCAGGAAGCCGGTCACTTTGTCAAGGATCTGACAGATATGTTGTCCTACTGTCAGAGATACGTGTCTCAGAAGAAATCAAATCTAACACACTGGCACCCGGTGTTGGGCTGGTTCTCTCAGACTGTTGACTATGGGCTTAATGAGTCTATGCCGTTGGTGACGAAGCAGTTGCAGTGTCTGTGGGGAGTTCCAGTGATCTGCACTCTCTTCTGTGATGTTCTCAGCAAAAAGCTAGAAACTCAAGATCCCACTCCACCTCCCCCTCCTGCACAAAGCTCACTACAGAATAATCTGCCGGTCAAAAATCTGTTCAAGAGAGCATTCCAGAAGTCTGCGTCTGTGAGGAATATCCTGAAACCGGTCGGAGGGAAGCGTGTGGACTCGGCTGAGGTCCAGAAGGTGTGCAGTATTTGTGTGCTGTATCAGACGGCCCTCACCACACTCACGCAGATCCGCCTGCAGATCCTCACAGGACTGACATATCTGGATGAGCTGCTGCCTAAGCTGTGGGCATTTATCTGTGAGCTTGGCCCTCAGGGGGGACTCCGACTCTTTCTGGAGTGTCTCAATAATGATACggaagagtccaaacagcttcTGGCCATGCTGATGCTCTTCTGTGACTGCTCCAGACATCTCATCACGATTCTGGATGACATAGAGGTCTATGAGGAacagatttctttcaaaatggaAGAGCTTGTTACAATCTCCTCGTTCCTCAACACATTTGTTTACAAGATGATCTGGGATGGTATTTTAGAGAATGCCAAAGGAGAGAAGCTGGACTTATTCCACAGTGTTCACGGCTGGCTGATGGTTCTGTATGAGCGGGACTGTCGCAGGAGATTCACACCTGAAGATCACTGGCTCCGCAAGGACCTGAAGCCCAGCCTGTTGTTTCAAGAGCTGGAGAAAGGCAAAAAACGAGCACAGCTGCTACTTCAGTACATTCCTCATGTCATCCCACACAAAAATAGGGTGCTGCTGTTCCGTAACATTGTGACAAAAGAGAAGGAGACTTTGGGATTGGTTGAAACAAGCTCCGCCTCTCCCCATGTGACTCATATAACCATTCGCCGCTCACGCATGTTGGAGGATGGTTATGATCAGCTGCGGCGTCTGCCTGTCAACTCTATTAAGGGAGTGATCCGAGTGAAGTTTGTGAATGATTTAGGCGTGGATGAGGCTGGAATCGACCAGGACGGTGTGTTTAAAGAGTTCTTAGAAGAGATCATCAAGAAGGTTTTCAACCCAGCGCTCAATCTGTTTAAGACCACCAGTGGGAACGAGAGATTATATCCCTCCCCGACCTCCAGCATCCACGAGAACCACCTCCAGCTGTTTGAATTTGTTGGAAAGATGCTGGGAAAAGCCATGTATGAAGGCATAGTAGTGGACGTACCATTTGCCTCGTTTTTTCTCAGTcaggttttgggtcaccatcaCAGCACCTTCTACAGCTCCATAGACGAGCTGCCCTCTCTTGACTCAGAGTTCTACAAAAACCTCACCTCTATAAAGCGTTATGATGGGGACGTCAGTGATCTGGGTCTGACTTTGTCTTACGATGAAGAGGTGATGGGGCAGTTAGTCTGTCATGAGCTAATTCCTGGAGGAAAGACCATGCCTGTCACTAATGAAAACAAGATCAGCTACATCCACCTGATGGCCCACTTCCGCATGCACACCCAGATCAAAGAGCAGACGGCGGCGTTCATCAGGGGCTTCCGCAGCATCATCAACCCAGAGTGGCTCCACATGTTCTCCACCCCTGAGGTTCAGAGGCTCATCTCTGGAGACAATGCTGAGATAGACCTGGATGATCTCAAGAAGCACACTGTGTACTACGGAGGTTTCCATAGCAGCCACAGAGTCATTCTTTGGCTTTGGGACATTCTCTCCAGTGACTTTTCCCCTGAGGAGCGAGCCATGTTCTTGAAGTTTGTCACCAGCTGCTCAAGACCTCCTCTGCTTGGATTTGCCTACCTCAAACCCCCTTTCTCCATCCGTTGCGTGGAAGTGTCAGACGATCAGGACACAGGCGACACTTTAGGCAGCGTCCTGCGCGGCTTTTTTACCATTCGTAAGAAGGAGCCAGGTGGTCGCCTCCCTACATCCTCCACTTGTTTCAACCTGCTCAAGCTGCCCAACTACAGCAAGAAGAGCATCCTCAGAGACAAACTCCGCTACGCAATCAGCATGAACACTGGCTTTGAGCTTTCATAACCTTCCAAGCACATTTGTGGGCTGGTTTGTTCTACCCATACAAACTCATACATCTTCGAAAACTGGCAGCGGTTGAGCTAAAGTGGCGTCACAAAAGTTGAAGTAGGAGACATAATGATTACAATCTTGCGTCGTTGACATTTTGGCCTTCAGCTAAGGCCCCTTAACTTGAGTTGCTCAAGGAGAATTTTTTTCCATCAGTTTCTACTCTGTCTTGTCTACCAAATGGCAAGTGAATGAAGAAACATACTACGTTTTTAAAATCGTGGAACTGAGCTAAACATGTCCAGTCAGACTTGGAGACTCTGAGAAGATCAACCATAGAAGTTGAACGTTACCAACATTACCTTCAGAATTGTTTTTGAACCACTTAAGGATTCATATTTAGTGTCTTGTTCTTCATTCTCAGCATTTGAAGCCAAAAGAGCTCCAAACGCCTTACTTATACAATCAGTTTTAAACCAGCTCTATTTAATGTTGTCAAGTCAGGATCCTTCTGACCCCTCCATTATTTTCATCCAGAATAATAAATCGGGCTTAGTCTTTATCGGCTCATTTGTTGACAAACACTCCTAAACCTCCTCTTGAAGTTACAGAAGATGCAGTGGTGGATGTACAGATCTGCAGAAACAGTTCAGCGTTGTCTCTCAGGTCTATCACTCCCCCAGGAAGGGAACAGGAAAGCAATACTAATGCACTGCAAGCCATGCAACTCAAGACACAAAGGAGGCTTTTGCCTTTTTATATGGCAAATGCTTTCAAGCCCATAGCACGCTAAACTTCTGCTGGACTTGAGGATCAAGCTTTAAGAGGATACCCAACACTGTTGATCGACTTCAGCATGTCAGAACCAGCAGTATGTCAAAAAAGAGATGTCCCTGTCCTCTCCTTTCCTGCTATCTCTTCACATACACTACAGAGCCTTTTCCAGAAACGGCCCAATGTCATCGTGACATTTCTTTTTGCTCCTGATATTACACTCATTATTCTGCTTTTCAGGCCTAATATGTTGTCGTCTCGTCAGACTCATCTATTCATTAAGATCAGTTCCCTGTCTTGGACTTTTTAATTGATGAAGGCTAACCACTAAAAGGAATTTTACTCCCATTTCGGAAGTAACCAATGATCACATGACAAACCACTCTCCCTATCATCTCCCATTAACTCTTTGCTCATCGCTGCAGTGTATGCTACTGGAATTAAGCCATACAGTAAAGATGACTAGCTATCAAACCAGCTCTCGTAGGGACTTTTTTAAAGGGAGAGTGTTGCAGTAACTTCCCTGAAAGGTCATGGAATCTCGTGAAATGTTATTCCAAGTAGAAAAAAAACCATCTTCCTTTGCATGATGTCACTGGActattcaatttttttgttttgttttgttacggAGAACTTTAGGGTTAATCTGTCGAGAAATTTCTGggttgttttttcccccaaaatgtaaatgaaaaatattaagaaaatatgttttgcaaAAAGGAAGTGAAGCCTAATTTTACATCTTCAAGAAAACATCATGGTAGTATTTATTCATGGGtgttatttaaactaaaaaatgtaatcatcaGGCTATATTTtgatgcaaaatataatttcttgcTTTCCATTGATTTTTGGGGTTAATTATGTCCTGGACATTTCTTCATGAGCAGTAATCGGCTGTAGTTATTCCAGAATATTTATTGTATGCAAACCCTCTTTCCCTTTGTATGCCGTATATGCAAAATTATAGTTAAACATTAACTGTCTGCCCAGCCTCCCCCGGCTCTCCATAAATCAAGGCATGGAAGTATCTTCTGATGTATAGAGTCCTTTGTAGATGTGGAAAACTGGCTTTAAGCTCATGTAACTTTTTTGTATGCATTGCTGTTAATGTTAAGTTATAAATGTACTGTCCTAATGCACAAGGGCTTAGGCTGAGTCCAATagcatttagtatttaaatttaactgaCATTAACATGCTATTCCCTTTGAAAGGTGTTCAAGTGCTCTGGTTGGTGTAGTGGATGAGGAATGTGTTTGACATAATGCTGTAAACgcaaaaatattcacattaatGAGGAGTCTTTATGGTGAAACGACTCAGCTGAATTACATGATGTCACAgaattgctctctctctctctctctctctgaaggggAAGCAACAACCTTTAAAGTGTCTGGTCTCTATTCCTTTGCCTGATGATGAAGTGTCTTTTGAATTTGGTTGCACTACGTGAACTGCAGGTTgttatatacacagtatattacAAAAGCAATGGCATTGTAAAGTTCTTCATGTGTACAGTAATATTTCCtctgtaaaatgtaaacttaaTTGTCgaacaaacatacaaatatttgaatatccAAATCTAAAAACTTTACTAAACAACAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10588 UBE3B; ubiquitin-protein ligase E3 B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49099 lncRNA upstream 114257 5526849 ~ 5539398 (+) False G33348
TU49093 lncRNA upstream 114326 5469072 ~ 5539329 (+) True G33348
XR_006251080.1 lncRNA upstream 185624 5456097 ~ 5468031 (+) True LOC122346031
TU48915 lncRNA upstream 250871 5401315 ~ 5402784 (+) True G33206
TU48972 lncRNA upstream 283134 5368434 ~ 5370521 (+) True G33257
TU49281 lncRNA downstream 150593 5817420 ~ 5870510 (+) True G33454
TU49269 lncRNA downstream 192463 5859290 ~ 5860897 (+) True G33453
TU49270 lncRNA downstream 192463 5859290 ~ 5880529 (+) False G33453
TU49303 lncRNA downstream 196505 5863332 ~ 5897366 (+) True G33471
TU49349 lncRNA downstream 412256 6079083 ~ 6079423 (+) True G33492
XM_043238671.1 mRNA upstream 5608 5625267 ~ 5648047 (+) True myo1ha
XM_043238664.1 mRNA upstream 32955 5595095 ~ 5620700 (+) False acacb
XM_043240291.1 mRNA downstream 4458 5671285 ~ 5679031 (+) True mvk
XM_043239993.1 mRNA downstream 81291 5748118 ~ 5804954 (+) True fam222a
XM_043239994.1 mRNA downstream 81291 5748118 ~ 5804954 (+) False fam222a
XM_043239995.1 mRNA downstream 81291 5748118 ~ 5804954 (+) False fam222a
XM_043240906.1 mRNA downstream 185139 5851966 ~ 5857677 (+) True LOC122346201
TU49128 other upstream 3770 5604333 ~ 5649885 (+) False G33355
TU49131 other upstream 3770 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other upstream 6230 5625267 ~ 5647425 (+) False myo1ha
TU48849 other upstream 1030595 4622507 ~ 4623060 (+) True G33174
TU48610 other upstream 1509259 3605186 ~ 4144396 (+) False G33015
XR_006251052.1 other downstream 293008 5959835 ~ 5978584 (+) False tnpo1
TU49351 other downstream 420435 6087262 ~ 6088562 (+) True G33494
XR_006250986.1 other downstream 580968 6247795 ~ 6254646 (+) False hexb
TU49600 other downstream 806520 6473347 ~ 6474191 (+) True G33664
XR_006251060.1 other downstream 1126538 6793365 ~ 6824304 (+) False si:dkey-34e4.1

Expression Profile