RNA id: XM_043239930.1


Basic Information

Item Value
RNA id XM_043239930.1
length 3458
RNA type mRNA
GC content 0.42
exon number 12
gene id dpf2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13926712 ~ 13937331 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGCTTAGCGCTCACCCTCCCTTCTCCTGAACGCCCCTGACCCGTGACCTTCCCCTAAGGTGCTTCCTTTTGCGCAAGCGCAGAACACCCGCTGTGAGCGCATTAGAGCCAAGATGGCGGCGGTGGTGGAGAATGTTGTCAAGCTGCTGGGTGAGCAATATTACAGGGACGCCATGGAGCAGTGTCACAACTATAACGCCCGTCTGTGTGCAGAGAGGAGCGTCAGGATGCCCTTCCTTGATTCTCAGACAGGTGTCGCCCAGAGCAACTGCTACTTCTGGATGGAGAAACGGCACAGAGGACCAGGCGTTGCCCCAGGTCAGCTGTACACATATCCAGCACGACGctggaggaagaagaggagagtTAGCCCTCCAGAGGACCCCCGTCTAGCCTTCCCGTCTCTAAAGTCCGAGCTGGATCTGGGGCTTAAGAAAGATGTTTTCTCCAGTGATGGCAGCAGTTTAGAGGCACTTCTGAAAGGAGAGCCAGTGGACAAAAGATCTGGGGTGGAGATCCGCACAGCCGAGGAGGAACCCAGCTCTACCGAGTACTCTTCTGGGGGACTAAACCCCAGCAGTAGGGTCCGTAAGagaaTTTTGGAGCCGGATGATTTTCTAGATGATCTGGACGATGAAGATTATGAAGAAGATACTCCAAAGAGACGGGGAAAAGGCAAGggaaagGGACGTGGAGTCAGCAGCACTCGGAAGAAGTTGGAAGCAGCAGCTGCTTTGGAGGATCGAGACAGACCATACGCTTGTGACAacactttcaaacaaaagcatatttcaaAATCTTCCGAAAGAGtctgtGGGAAGCGCTATAAGAATAGGCCTGGTCTCAGTTATCATTACGCCCATTCTCACTTGGCtgaggaggagggggaggagaaAGATGAGATGGACATTCGTGAACCAACTCCACCCCAACAAGACGAACCGAAGACTCCTAAGAAGGGCCCAGATGGTTTGGCTCTGCCAAACAACTACTGTGATTTTTGTTTGGGAGATTCCAACTTGAACCAGAAAACCGGCCAATCGGAAGAGCTTGTGTCCTGCTCAGACTGTGGCCGTTCTGGTCACCCCTCTTGTCTGCAGTTCACTCCAGTGATGATGGCTGCTGTGAAAACCTATCGCTGGCAGTGCATTGAATGCAAGTGTTGCAATATGTGCGGAACGTCTGAAAATGATGACCAGCTGTTGTTCTGTGATGATTGTGACCGAGGTTACCACATGTACTGCCTTTCGCCCCCTATGTCTGAACCTCCTGAAGGAAGTTGGAGTTGTCATCTGTGTTTGGCCCTCCTGAAAGAGAAAGCCTCTATATACCAGAATCAGAATGCACCTCCCTCGTGATGGCCTTTTTGGAAAGACAGACCTTCTTTCTCATAGTTACCCTCCTAGATTCATCTGTTCAGTTTAAGCAAATGAAACGGGTCGAACAAAAGTTGTAttggaacagaaaaaaagacgACCCCCTTGTCCGTGCCCGCAGACAGAAAAGGAGGGAGAGAAAGCGAAAGGGAGTGAGAAAAGAGTGCCCTTCTTCTTAGTTCTCTTTCACATCTCAGCAGGTTTGATCTCAGTATGACTGTTACACAGTTCCAAGTTTCAAACTACCCCTGCTCGTTGTTTTCAACTATTAGCCCCCCCACAACTAACACAGTACTTCCACAGCAAACGTCAAAGCCAGTCACAAACTCTCTTGACACTTACAGCAGTACATACTTGGAGGAAGTCGCTATGAGAATATTATGACTCTGTTTTTGAGTTCCTGCTCATATTAGACCTGATATTTCCACCCGTTTCTGGGGACACTGTTTAACAAGTAATTAGCTGCAGCTTATATCagccacaataaaaaaaaaattgcatattcaGCCATATCCAAAATACTCTGTACTGACACTGTGCTTATCACGGAGACGAATAGTTGAAACCAATCAGCATGCCAATGCTTGTTCATAATAagcaaaatagaaaagaaacaataatgtgtttttgtatatttataaatttgtataGCATATAAAGGTGTGCCGTATTTAAGATCTTAAACAATAGAAATGGTTCATTATTATGATGGGAGTTacttggggatttttttttgttgtaatgatAGCATCTGTATATGCCACTGAAGCACAGAGTCTAGAAAGTCAGCGTGTGACCTCTTTACTAACTAATGGGTTAATGGTGCAGGTAAGGGTagtgattttaatttatatttttatattgtcattcatttttgcatttttttagacATGCTTAAGATATTCAGAAATTGGTTACAATTTAGGTAAAAGTGGATAGGACATCGGGTAATCGAGGAATAGGATTGAAAAACAggactaaaaaaagaaatagtccAGTATAAAAACGTTCAGAAATAATGACTGTAATAATAACTGTTGGCAATTAATGGAGATGTAGAACAATATATTGCAGTCTACACTGAGATCAGTTTGAGGATTTTAGTAGTTTGATAGATTCTACCAAGAATGTTAAATGCCTTTCAAAGTAATCCTGAAGGATTCACTGTTGAGTACAGGAAAGATTTCTATAGTGCAAGAAAATATGTGGACAAATACTTCAATGCCATAATTCTTATGTTTACTGTAATGACATTTCATTGATTACGGCCATACATATGACAAACATATTCTTTTATCAAATTATCATTAAATTGCCAATTGCCGGGTGTAGGATATTGAGCAAAagtatttctggaaaaaaaaaacacatgtaaaaCACACAAGTATGTGGGTCACATGCTTGGTTAGTcagcaaattaattttaatatagcTTAACCAAGAGTCTGCTTTCAGTCCTTTAATCTGTGGTCTGTATTGGCATCTTTATGGCATCAGATATGTGCCATTTAAACTGGAAAAATTGTCACTTAGAGAGAGGGTTCACACAAAGAAAGTTCAATTGCCGTCATTTACTCACAAACTGGTATAACTTTCTTCTGTGAATCataaagaaatgagaaatgtcTTGTTTTGGTCACCGTTGACTCCTATTGTatggacaataaaaaaaaaaaaaaacatagtttgaTCCCAATATCAACTATCTTCAAAATATCGACTAGCGTCTAGCgttccacagaaaaaagtcATACGGCTTTTGAAAGGCTTGAGGGTAACAAAATGGTGAcggaattgtatttttttttttggctgagtTGTACCTTTAATTAGGGATTGAATGATGGTAGTGAAGACAGAAAGGTTGCTGAAATGACCCAGTGCTAAATTCAATACAGCACGGATGTGAAATGTGGTATTTGCTGAATTTGTCAGAGCTTAGTTTGACTTCCTAGAGTAAGCTGAAGCAGATATACAGCGTGCTTCAAATGTTCCCATATTTTCCTGTCTTCTATTGCCATTTACCTTCACAATCCAGCCAAAACTTCCtttgtttaaagaataaatCTAGAGCACTGCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13196 DPF2, REQ; zinc finger protein ubi-d4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53340 lncRNA upstream 194256 13731969 ~ 13732456 (+) True G36198
TU53333 lncRNA upstream 205146 13720785 ~ 13721566 (+) True G36191
TU53304 lncRNA upstream 278174 13647926 ~ 13648538 (+) True G36168
TU53263 lncRNA upstream 345914 13566977 ~ 13580798 (+) True G36141
TU53255 lncRNA upstream 405104 13519973 ~ 13521608 (+) True G36140
TU53521 lncRNA downstream 37201 13974532 ~ 13974759 (+) True G36332
TU53654 lncRNA downstream 61769 13999100 ~ 14000337 (+) True G36405
TU53655 lncRNA downstream 63195 14000526 ~ 14003531 (+) True G36406
TU53657 lncRNA downstream 68440 14005771 ~ 14007402 (+) True G36408
TU53675 lncRNA downstream 109446 14046777 ~ 14047494 (+) True G36420
XM_043239978.1 mRNA upstream 2799 13916335 ~ 13923913 (+) False cdc42ep2
XM_043239979.1 mRNA upstream 2799 13916478 ~ 13923913 (+) False cdc42ep2
XM_043239980.1 mRNA upstream 2799 13916478 ~ 13923913 (+) True cdc42ep2
XM_043240801.1 mRNA upstream 14108 13855423 ~ 13912604 (+) False LOC122346121
XM_043240803.1 mRNA upstream 14108 13855424 ~ 13912604 (+) False LOC122346121
XM_043239845.1 mRNA downstream 7451 13944782 ~ 13965039 (+) False myo1ca
XM_043239844.1 mRNA downstream 13757 13951088 ~ 13965039 (+) True myo1ca
XM_043238520.1 mRNA downstream 38083 13975414 ~ 13977020 (+) True epd
XM_043238328.1 mRNA downstream 40879 13978210 ~ 13983728 (+) True panx1b
XM_043238330.1 mRNA downstream 40879 13978210 ~ 13982302 (+) False panx1b
XR_006251084.1 other upstream 1119496 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1221471 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1410604 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1671040 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 46766 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 353089 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 362712 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 362712 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 710158 14647489 ~ 14651911 (+) False fgf5

Expression Profile