RNA id: XM_043239979.1


Basic Information

Item Value
RNA id XM_043239979.1
length 3438
RNA type mRNA
GC content 0.41
exon number 4
gene id cdc42ep2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13916335 ~ 13923913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACAGAGCTCTATAGCGCGCCTCTATTTCTACACGATCAGCAAATACTCTCTGTATAGGTATGCGGTATCAAGTGTTAGGGTTATTTTTATACTTCTGTCAGTTCTGCAGGTTTTCGCGAGGCAAGAAATATGTATGACAGAGCAGAACCGATACTGAATAATCTGAACCCGAAAGTCCTGCGCATGGACGCGTTGTGGATAGGAGTTTGATCGCACGGGCATCTCAGAGTGGATCCCACTTTTAACTTTGACCTAAAGAACCCATGTGTTATGCATACTGCGTTTTCAGCGTCTAAAACGATGGCCGGATTGTTGTCCTGATAGAAATAGTGTCCTTCTGGATGTGGCCttcaaatgtgtttatgaaaagACACTCTGAGCCAATGAAGAATTTTCCacaagaaaagaacaaaaaaggcGCCCTGACTTTGTCCAGTCGGattggttttgaatgctaaGTCTGTCTCTCTGTTGTTCGGGAGGACACGGCAGGTCGGACATGTCTGCCAAAGCCCCCATATACCTAAAGCGACGAAGCCGCAAAGGAAAGAAGGAAAAGTTGCGAGACCTTCTTTCGTCAGACATGATCAGCCCTCCGCTGGGAGACTTCAGACACACCATCCACATCGGCAGTGGCGGGGGCGCAGATGATCTTTTCGGTGACCTGTCGTTCCTACAAGGTAAATTCCACCTGCTACCGGGCCAAGAAGGTCACCAGGGCTCATGTCAACTAAGTCGCACAGCGAGCGTAAGCAGTCACCCGCCGGCCAGCGAGAGCTCACCTCTTTTGAAAAATGCCTTGTCGCTTCCTATCATTGGGGGGGTGCAGGCGCTCACCCTTCCGGCCCCGACGGCCACAGCGACGGTGACCACTGCCGTCCCAACACCACTGTCAGCGACCCAATCACCCCCAACATCTCCGTCTCTCGCTCCGCCTCCCAAACCTCCCAGACTGCACCTGGAGGAGAGGAGCGTGTCACGGCACGCGTCACTGCCTGTGTCTCCGAAGCGCTCTCCACTTCATTtgcacacatgcaaacaaagtCCTGAGGAGAATGAGAAGTGTGTGAAGGATGGAGATGAGGAGGAAAAGCCGTATCTGTCCAATGCCGGCTCAATGCTTTCCCTCCATCTGGACTTGGGGCCATCAATCCTAGAGGATGTGCTTCAAATCATGGACAACCAGAGAACAGGGACATTCGGTGGGGGACTTACACCAAGTGGACGGCAAGAGATATATACCTGAAAGTGAGCTAATCACAACATTTTTCTTCTGCCCTCTGAGAGAACTTATTTACCTGCTGTACAGTTGCATTTTCTTGGAAATGTAGAATTTTATGCTCATCGTACATATAATCTTTGGAAAAGATCTTTGGAAGCTCTAGGAATGGGGCCAGTTCAAACTGAATCTGTTCTGTCGTCTGATTTTTTTCCGGGTTCAAATGAAATTCATTTCTCTTCACTTTGGACTACAAGCAATACACCAATTCCGGCTACTCTTAGATACATTTTGAAGCATCTGAAAGCATTTAAGCAAGCACATGTAAAACTACCTGCGTTGTGTATGTACTACTACGGAGCAACACTACGGGAACagaaaaactgacatttttctctttcaaagCAGCAATGACATCATCTCCCCCTCTGTGTTGTTGCAATTTGTGTAATCGGGTAAAAATGCGCAGCTCCTCCCTAATGATCTGGACACACACTCATGCCAGGAGGCCTCTGCATCTACACCCTGGGATTGTAACTTTCTCTTTTTGTTGGGAGTAGTTTTCATTGTTCCGAAACAGAAACCCAAAGGCACCGAATATGGaatgttttccttttataaaataccctttttttaaactgtttttggttttgttgagGTGTCTGCAATCCCTCAGGCTTTGACAGATGATCACTTTCTTTTGgcagcagtgtttttttctttctctgactTGAGTGGTGGGGCCTTAAGGGTTTGTGTTATCTTGGTAACCCTCGTGTAACTCAGCCCACGTGGGTTAATAATGCTCTGTGCTTCCTGTTCAGAGATAAAGACCTATTACTGTTAGTATTGTTTTGTCAGATTATAAACTCAGATAAACAACTTGTAaccttttttattaacttaCCATAAAATGCATCAAACCATCAACAAGGAGAGCTTAAAAGAAATAGCAGTAATAGTCGTATTGCAATCAACTTTATATGATGCTAACTTTGCACTGTAACAGCAATAACAAAATCTACTGCATTGATTTACAGtcaatcatcagttctcatatttaaaaaaatatgttttgttcttAATAGTGAATTGTCTAACAGTTTCATCCTTACATTGTGAAATTAATTCTAAAGCTGAATCTATATCCAAAACCACAGTTCTGTTCAcgtaatttcatttttgatataCATATGATCTAAAGGATTAAATGCACAGACAGATTAAATTATATGGTATATATTTCCATTTGCTAAGTACTTGTTTTTGTGAGAATAAGAACTCATTTCTTTAAGCTAAATGttactgaactgaaataatACTGAACAGGGACctaaatcataaacataaatagAGTTTAGCACTAATCATAACATAgagtttattttacattttcttagaCTTAATTAACCTAAATGTTCTCATAACCACTTTACTGCTAAAATTATTTGAAAGAGACAATAAGcaatgttaaatatgaaaatcttgatttaaaaaaacatgtatagcTCGCGTAAGTCATTGTATTACATTAAGGGTGATCAGGGTTAATGAGGATCTTATGATTTTGCATCACTGAAGCACAATTacgacaaaacaaacaaaataataagagtaaataaaagtacaatacCATTTTACAGTAAACAACTGGGTAAATATATATGGGTACGTGTAAGTATGAACAGGCaaatgcattgctaaaacaTGTTAATAAGCATCTCCAAAATACTTTTCTGCTCCACCACGGCAATACTGTGATCATTTATCTTGTGTAATATTAATGCTAGTTTGAGTTTGTGAAAAATACAGACTTggattattactgtattttagattaaactgaaaatatgatGGCATGACTTGTTTCTCAGACATCAGATTCCTGACAAAGactttttatcataaaaatgcatcatgTTTTTAgactgaaggggaaacagctgCATCTCTGTGAGGAATATTATAGCATTGCTGCCTTGTCAATGAAAGTGAATCATTGATGCCTTTGACTCCACTTTAACGATGTGTCATGTGCCTCTGCAGCACTGAAAAAGGAGATATTTTTGCCAATGTGTTGGTTTTTAATGGCCTTTATTTTTGTCGGATTCTGTGCTAGACGTTAAGTGGATAtttactgctgctgctgctgtacaCGCTACAATAGACTTGCAGAAAGAAACATAATAgtgaataaatgctgatttCTAATCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53340 lncRNA upstream 184022 13731969 ~ 13732456 (+) True G36198
TU53333 lncRNA upstream 194912 13720785 ~ 13721566 (+) True G36191
TU53304 lncRNA upstream 267940 13647926 ~ 13648538 (+) True G36168
TU53263 lncRNA upstream 335680 13566977 ~ 13580798 (+) True G36141
TU53255 lncRNA upstream 394870 13519973 ~ 13521608 (+) True G36140
TU53521 lncRNA downstream 50619 13974532 ~ 13974759 (+) True G36332
TU53654 lncRNA downstream 75187 13999100 ~ 14000337 (+) True G36405
TU53655 lncRNA downstream 76613 14000526 ~ 14003531 (+) True G36406
TU53657 lncRNA downstream 81858 14005771 ~ 14007402 (+) True G36408
TU53675 lncRNA downstream 122864 14046777 ~ 14047494 (+) True G36420
XM_043240801.1 mRNA upstream 3874 13855423 ~ 13912604 (+) False LOC122346121
XM_043240803.1 mRNA upstream 3874 13855424 ~ 13912604 (+) False LOC122346121
XM_043240802.1 mRNA upstream 3874 13876001 ~ 13912604 (+) True LOC122346121
XM_043240804.1 mRNA upstream 3874 13876002 ~ 13912604 (+) False LOC122346121
XM_043240094.1 mRNA upstream 72695 13809720 ~ 13843783 (+) False ltbp3
XM_043239930.1 mRNA downstream 2799 13926712 ~ 13937331 (+) True dpf2
XM_043239931.1 mRNA downstream 2799 13926712 ~ 13937331 (+) False dpf2
XM_043239845.1 mRNA downstream 20869 13944782 ~ 13965039 (+) False myo1ca
XM_043239844.1 mRNA downstream 27175 13951088 ~ 13965039 (+) True myo1ca
XM_043238520.1 mRNA downstream 51501 13975414 ~ 13977020 (+) True epd
XR_006251084.1 other upstream 1109262 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1211237 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1400370 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1660806 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 60184 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 366507 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 376130 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 376130 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 723576 14647489 ~ 14651911 (+) False fgf5

Expression Profile