RNA id: XM_043240065.1


Basic Information

Item Value
RNA id XM_043240065.1
length 5697
RNA type mRNA
GC content 0.45
exon number 31
gene id garnl3
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6857879 ~ 6915413 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGACTCTCGCGGTCACGAGCGCGGCGCGCGGCTGTAAGGGGACTCCAGCCTGCGAGAATCTGCTTCTTGACTGTTCAGTTACGCGCGAGGTGTGTCCTGTGCGTCCCTATGAAACTCACCACTGCGACCATCAGGTGCATTAAGAAAAGGACCGGCAGAAACGCGCTACCAGTACTAAGAGGCAACGCAATGAAGGGACGCAGCGGCACGAGCAGCTGTAGGGAAAAAGACGCTCACTGATCTGTCTCTTTGAAAGAGAagactaagaaaaaaaaggcgAGGGACAGAAGAACTTGGACTGCGGGAGAGAATAACATCGCATGGGGCCATGAGCGGTGCAGACCCCGCAGCGAACAAACTGTTGAGTTTCAACCAACGCTCAGCATCAGAGGATCTTGGGTGCCGGAGAGGAGAGTTCAGCCGGAAACACTATGGATCAGTTGAACTGCTCATCTCCAGTGATGCAGACGGGGCCATACAGAGAGCTGGGCGATTCAGAGTGGAGAACGGTTCAATAGATGAGGCCTCTGACTACACGCCTGGAACATGGAGGAGAACTGACGTCCATTTGGAGAACCCAGAGTATCACACCAGATGGTACTTCAAGTACTTCCTGGGAAAAGTTCATCAAAACTACGTGGGGACTGATGCAGAGAAGAATCCCTTCTTCCTGTCTGTGGTTTTGTCAGACCAGAACAACCAGAGGGTCCCACAATATCGAGCCATCCTGTGGCGCAAGACGGGTACTCTAAAAATCAGCCTTCCATACAGTCCGACAAAAACGCTATCAGTCAAATCTATATTAAGTGCCATGAATGTGGATCGTTTTGAGAAGGGGCCCAGGGAGATCCTTAACCCAGAGATTCAGAAGGACTTATTGGTGCTGGAGGAGCAAGAGGGCAGTGTAAACTTTAAATTTGGTGTTCTTTATGCCAAAGATGGACAGCTGACAGATGATGAAATGTTCAGCAATGaATCAGGAAGTGAGAATTTCGATAAATTTCTGAATCTCCTTGGTGACACGATCTGTCTGCAGGGCTGGGCGGGGTATCGAGGAGGACTGGACACTAAAAATGACACTACAGGAATGAATTCCATCTACACAGTCTATCAGGGTCATGAGCTCATGTTCCACGTTTCCACCATGTTACCTTATTCTAAAGAGAACAAGCAACAGGTAGAGAGGAAGAGACATATTGGGAACGACATCGTGACCATTGTGTTTCAGGAGGGAGACGACGCCTCTCCGTCCTTCAAACCCTCTATGATTCGCTCCCATTTCACACATATTTTTGCCTTAGTTCGATATAATAGCCAGAATGATAGTTACaggTTGAAGATTTTCTCAGAGGAGAGTGTGCCGTTGTTTGGCCCACCGCTCCCTTCCCCTCCAGTGTTCACAGACCACCAGGAGTTCAGGGACTTTTTACTAGTTAAATtaataaatggagaaaaagccACTCTGGAGACCCCAACTTTTGCTCAGAAACGTCAGCGCACGCTGGACATGCTGATCAGATCCTTGTACCAGGATCTCATGCCTGACATGCCCAAGGTTCCCTTCTCTCCGCAGAACATGCTGAACCGACGCTCGTTCAGCGATGTGCTGCCAGAGTCGCCCAAATCTGCCCGTAAAAAAGAAGAGGCACGCCAGGCTGAATTCGTTCGAGTTGGACAGgccttgaagCTGAAAACTATAGTTCGAGGGGATGCTCCCACCAGTCTCGTCACTACTGGCCTTTGCAGGAAAGAGCCATGGGAGTCACAGTCATTCTGCAGTAGCTTCCCGTATGATATAGTCTGTGGGGATTCGTGGGGACAGTCATTACTGGTCGCCACAGATTCAGCAGGGGTCATGCTGCTGGAGGCCTCAGATCCACTGTTCTCCAATGCAGATTCGCCAACCCTGCCTCCGGTGCAGGTATTTGACAAAACCTTGACTGTCAAACAAATGCACGTGCTTGAACCTCAGGACCTCCTCATTGCAAGAGCAGATAAGGGGAAAGACGCTCGACTGTATGTTTACAGACTGAGCTCTCTCAAACGAGGGATAGAGGAGCGGCAGCTTGTCCGCACCAAGTGTGACAGTCGAGAGAACAAGCTGGAGAAAACCAAAGGCTGCCATCTCTACTCCATAAACACACATCATGGGGTGGAGCTCAGAATCGTCGCGGCGATAAGAAACAAGCTCCTCCTGATCACCAGGAAACAGTCACGCCTCGATTGCCTCAGCTCTGTTGCTACAGTCACAGGGACTACTGACTCACCTGTGGAAGAGTTCCAGTACATACGGGAGATCTGCTTATGTGATTCACCGGTGGTCATGGCCCTGGTTGACGGCCCAACAGGAGAGAACGATCACATGATCTGCGTGGCCTACAGACATCAGTTTGACTTGATCAATGAAAGTACAGGAGACGCTTATAGACTACACCATGTAGACTCCAACCGGGTGAACTTTGTTGCTGCCATAGATGTGTATGAAGACGGAGAGGCTGGACTTCTTCTTTGCTATAACAATAACTGCATCTATAAGAAGGTGTGTCCGTTTAACGGCGCAACACCCATGATTCAGCCCAATACTTCAGACTTCCATTTCAGCTGGAACCAAATGCCCAACGCTATCGTATGTGCGTTCCCGTATATCCTTGCATTCACCACTGACTCCATAGAGATTCGACTAGTCGTTAATGGCAATCTAGTATATACAGCTGTCGTTCCAGAACTGCAACTGACTGCATCCAGATCTGATATCTATTTCATCTCGTCAGCACCTATCAACTCTGCCTCCAACTGTAGCTCCAGAGACACCAGTTCCCAGAGTTCCCCTCAGACTCCCACCGGCTACGAGATGCCCGTCTTCCCTTCGCCGCTCGGAGATGATTGTATTCGGATTCCCTACGGCACCAAGCTATCCCTCTACATGTCTAAAGACTCTGAAGGTGAAGCTCCCTCAAAACACATCTATAAGATCCCATTGAGCAACCTAGTCGGACGGAGCATAGAGAGGCCCCTCAAGTCGCCCCTGGTCAATAAAGTGCTCACGGCACCTGCCCCCAGCGCGATCGGCCCCACTCCCATGATCGCAAGCACAACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAGATCGCCAGCCGCACACGGAAAGAACTGCTGGGTTTGACTGAGGAACCCAGCAGTAAGGCTGATGGCAACTCGGTGAAACAGAGGAGAATGAGCAAGAAGACCAAGGAGGAAGAACAGAGGAGAACAGCGGAGATAAGCACCACTGAGcaAGTGGGAATGGAGTCTGTAGATGGAGAAACTGATGTCCACCGGCTTTGCTCATCTGGCTCCGAGGTGGAGCCAAGAGATGATAGCCCACCCGCGGCCAGCCCTTTTACCTTCTCCACGTCTTTTGAGGAGGATATTCTGGACCTTAAGTGATGACAATCACAGTCTGTGGATCAAAGTGCACCTCTCACCTTACACATCCTGctactttttactttatatcATTCTTATTTACCATGCTACATTGAGTTTTGTTTTCCTCGGTCTGCCTACTCATCTGTGCGCGCAAATGAATCCCCAGAGCTTTAAACTTGAAGGAGTTTACAGTGTGGTGATGTCAAAATTTACTCCTGGTggatgtatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtatgatCTTGTGTTTACTCTATATGAAAGATAGAATTACAACTAGAAAATTCAGATCCTCtgctattatttcacaattcaaaactgaccaaaaatgtttaaaaacccCTAGGGGTTTGATTTCGTTTCTATGATCGATGAGACACCCTCTCCATCAGCTTTTGGACAAATTTGTAGCTTTGTAGCAAACTTGTAGCCATACGAACAGAAATGagaactaataataaaacaaaaatggcttGAAAGGTTTGAGCCGCAGTTTTAAGGTCAAAGCGAATATTACTTTTCACTCCGGGGACCTGAATGTAAGATTGACGCTCCTAAAAAcgatgaaacattttttaactccttattttgtgtttttaaatgttttctatgtttGTGATTTGTACATTGTGTGATTATTTCgaagttgtaaaaaaacaaacacaaacaaaaaaaaaaaaaaaacgactctATATGCATCTCGGACCAGATGCACATGAACATACAaatgtaaacatacatatatacatataaatacatatacctTTCTAGTTCTATTGTATTATGGAGAAATAAAACTCAGTTCTTGTGTATATCAATGTTATGGTCTAACCTGCCTTCACCCTCACCATGCTTTTAAACCCTGACATGCAAACCCTCTGCAGAAAGGGCAGGAGTCTCCCACAAGTGCCATTTTCTACTGCAGCCGTCAACCACTAGCGCCCTCTATCAGACTGACCGCgaggcagaacaaaaaaaaccccattacaGAACAGTCTGGTCACCACATCTGGTAAATGTGCAGCTGTTTACTACGCTAACAGTATGAGCTTTGGTCCGTAAACATCCGCATTTACTGGCGCACACCGTCAAACGCAGTCTATAACAAGTGCTGTCGCTTCTTGAAAAGGGCTCTGGATCACCTGCATGCCTCCCTTCAAACCCACTATAAAATAAAAGGGATTTGATGTATTAATGGTTTAGAATTAGGATGTATTATCTTTACTCTTCTCATGGATTtggtaggggaaaaaaaaaaaaaaaaaaaacactccaggAATTAAAGCCAGGGTTACTTAAATTACATCTCTGACTCTgggttatataaaaaaaaaagtcttgttttctagtaAAATCTAAACATCTGAAAACATTTATGTGAAAGGCAAAGCGATATTACATACACACAAGCTGTAGGCCtatatatattgcattcatttattttactaatgcATACACTTAACTGGATCGCTAAAAGATGTTTAGGCATTTTAACtggaaaacaacacaaaaatagagAAAGGGGACACAATAGATTTTCGCTGTGTAATAAGAGAACGAGAATATCGATTCTGCTGTTTACAGTTCAAACTCAGAGATGTTTAAAGAATGTCAAAGTGACACCAGAACACAAGAGCCTCAGGAACAGCACAAGAGGAGGTGTAAGTATTAAACTGCTTAGCTTGAATGCATGACCCCCCTCCCCCCCTCTCAACCTCTTTCTCCATCTGAATGTGAACCATTTAACACTAGTAGCAGGCTGGACTACAAAGGGAAAACGTgggaatatttttgtaaatcgagagttttacatattatttatttgttatttttgttgtctttgaaGGGAATGGGTGAGCCAGAGACTGatggaatatatattttttccgtTTTACTTTTTCCTTTGGCATACCGTCCGTTACCTCCCCCCTCCTTCTGTTCGCTCCCCCGTTTTCGCAGTGGTTTTGTATCTATATCGATATTAACTGTTTAGACTGTTGCAGAAACTCTGTGATAtcagaaattaaaacaaaaataaataaataataaaaaaaaaaaacaccaagtgtcttaaaatattgtattgcCATTGTTTTTAATGCCAAGTAATACTTGTAAATGTTAGTGTTTCAGATGTGgcctcaaaaatattattattattatagcatttatttgaaaaagtgcTGTAGCCCACTGCTGTAGTTATTGTTCAttgatatgaaataaatatttatgaaatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49635 lncRNA upstream 174809 6617276 ~ 6696642 (+) False dab2ipb
TU49603 lncRNA upstream 376921 6475701 ~ 6494530 (+) True G33665
TU49666 lncRNA downstream 5332 6920745 ~ 6921639 (+) True G33708
TU49676 lncRNA downstream 14234 6929647 ~ 6930785 (+) True G33712
TU49702 lncRNA downstream 65304 6980717 ~ 6981993 (+) False kank1b
TU49863 lncRNA downstream 218881 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 219494 7134907 ~ 7135122 (+) True G33850
XM_043240463.1 mRNA upstream 46085 6793368 ~ 6825366 (+) False si:dkey-34e4.1
XM_043240465.1 mRNA upstream 46085 6808535 ~ 6825366 (+) False si:dkey-34e4.1
XM_043240466.1 mRNA upstream 47293 6793365 ~ 6824158 (+) False si:dkey-34e4.1
XM_043238320.1 mRNA upstream 108643 6716238 ~ 6762808 (+) False dab2ipb
XM_043239749.1 mRNA downstream 27952 6943365 ~ 6945577 (+) True c5h9orf78
XM_043239750.1 mRNA downstream 33905 6949318 ~ 6952114 (+) True rpl7a
XM_043239746.1 mRNA downstream 39416 6954829 ~ 6957123 (+) True surf6
XM_043239740.1 mRNA downstream 41860 6957273 ~ 6962389 (+) True kyat1
XM_043239745.1 mRNA downstream 41860 6957273 ~ 6962389 (+) False kyat1
XR_006251060.1 other upstream 47147 6793365 ~ 6824304 (+) False si:dkey-34e4.1
XR_006251059.1 other upstream 47293 6793365 ~ 6824158 (+) True si:dkey-34e4.1
TU49600 other upstream 397260 6473347 ~ 6474191 (+) True G33664
XR_006250986.1 other upstream 616805 6247795 ~ 6254646 (+) False hexb
TU49351 other upstream 782889 6087262 ~ 6088562 (+) True G33494
XR_006251123.1 other downstream 34486 6949899 ~ 6949965 (+) True LOC122346228
XR_006251115.1 other downstream 34798 6950211 ~ 6950281 (+) True LOC122346219
XR_006251114.1 other downstream 35273 6950686 ~ 6950758 (+) True LOC122346218
XR_006251121.1 other downstream 35877 6951290 ~ 6951366 (+) True LOC122346226
XR_006251122.1 other downstream 36245 6951658 ~ 6951729 (+) True LOC122346227

Expression Profile