RNA id: XM_043240148.1


Basic Information

Item Value
RNA id XM_043240148.1
length 3521
RNA type mRNA
GC content 0.46
exon number 3
gene id nr2f1a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18361873 ~ 18369522 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTAGTGACATCTGAGGACATGGTTTGTGCACTGACTCGCGATCTCGAGACGGTATTGTTCCGTCAAATGACGTAAAACGTTAATGGATCCTTCACAGTTCGGATCTAGACGCCGCgatgaatatttttgtaattaagaCTACAGCTTCGAACAAAACACTTTCAACTTTGTGCTGCTCGCACCAGTCCTTCCGCCTCACGcgcatttgtttatatttcacgTGCGCGTATAGTTCGCCCCTCGCTTTCATCCCGTTTTCCTCCGCTTCTTTCTGGGGTTTCTTCCTCTTTTTGTGACAATAGACGGTCCATTCTAATCGGGTTTCAAAGTAAATAGCAGCGCAGGGGCGAGCGCAATGTAAATTGTGCTTGTCAGAGCCCTCAGTCGTAGGTAGCGAGGAGCGAGGACTCTAACCAATGGAGTGAAGGAGGCTTGGCTAACCTTAGCCTCCCATTTTCTCTCTCCCCCCTCGATGCAGGGTTCTGACCAGTCAGTCGCCTTTGATTATCAGTTGCCAGCAGCCCCTCTCTTGGCTCCTTGACACGAGCACCATATAAGGCGCAGCGATCTCCATAGAAACGTGTCAGTTTCAATAGTAGTGTCAAAGTTCACTATATACAGACATTCGCGCAGATCTCCGTTTCGGAAACATTGCTCCGCTGGTACTCCCGTTAAAACGCATTCTTTTTTGGGTCTCCGCTTCTTACATATTccattagttgttttttttctttttatcctcGCTCTGTTCCTACTGGAGAGGTGAAACTACATAGGCACTCGGGCgacgctgtttttttttttcttttgctggaCCAGATGAGCTTTATTCATGAACATAGATAGAGAAATCCGTTCTTCAGTGTTTCCTCCTCTCCAACCGCGAAGACGGAGAGAGGAGCAAGGAAGAGAAAAGAGGGGAATTTATTTCGCACGGCACTTTGGATCTCCGGTCCACCAGAAAGCTATTATTTTTGCTTCAACGTGAAGATTTTTTATTGCGGTATTTTTTAAGAAacccgattttttttttattacgtctGGGATCGCTTTCTCTCTACACGATTGGGTTCCCGAATGGCTGACTGCAATTTACCTTGGAACTGGCCTCCCGACAATTGCATATCCTGATCGGGTGCCTTTCTGTCGACTCCGGTATTTTGAATGTATTGATCGTTTTCTGcttctacttttttttccctatgAGATTGAGTGCTCCGATTTGAATTCGCGCTGCCGTTCGTCCAAGACTTCCCTTTTCCCTGCTCCGATATCCGAGCGACCAGTTCGCTTGAAAGCACTTTTCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGCCGGAGGACCTCCGAGCGGCCCCAATCCAGCAGCTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCAGCGGCACCGCACACTCCGCAGACCCCCAGTCAGCCAGGACCCCCGTCCACACCGGGGACGGCTGGCGACAAGGGCAGCCAGAATTCTGGACAGAGTCAACAGCATATAGAATGTGTTGTTTGCGGGGACAAATCGAGCGGCAAGCACTATGGTCAATTCACCTGCGAAGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACGTATACATGTCGTGCCAACAGGAACTGTCCTATTGACCAGCACCATCGTAATCAGTGCCAATATTGTCGGCTGAAGAAGTGTTTAAAAGTGGGCATGCGGCGGGAagcGGTTCAGCGAGGAAGAATGCCTCCAACCCAACCGAACCCGGGCCAGTACGCGCTAACGAACGGGGATCCCCTGAACGGTCATTGCTATCTCTCCGGATACATCTCGTTACTACTTCGGGCCGAGCCTTATCCTACTTCTCGCTATGGCAGCCAGTGCATGCAGCCCAATAATATTATGGGGATCGAGAACATCTGCGAGCTTGCAGCTCGCCTGCTCTTCAGTGCTGTGGAATGGGCGAGGAACATCCCTTTCTTTCCCGACCTGCAGATCACCGACCAGGTGTCCCTGCTCAGACTGACGTGGAGCGAGTTATTTGTGCTAAACGCGGCTCAGTGCTCCATGCCCCTGCATGTGGCCCCGCTGCTCGCCGCCGCCGGCCTGCACGCCTCGCCTATGTCGGCGGACCGCGTCGTGGCCTTCATGGATCACATTCGCATCTTCCAGGAGCAGGTCGAGAAGCTCAAAGCGCTGCACGTCGATTCTGCAGAATACAGCTGCATCAAGGCGATAGTGCTCTTCACATCAGACGCTTGCGGCCTGTCAGACGCCGCACACATCGAGAGCCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAGTACGTGAGGAGCCAGTACCCGAACCAGCCCAGTCGCTTTGGCAAGCTTTTACTGCGACTGCCTTCTCTCCGCACTGTCTCTTCGTCTGTAATTGAACAGCTGTTCTTCGTTCGCTTGGTAGGTAAAACTCCCATTGAAACCCTCATCAGGGATATGTTATTATCCGGGAGCAGCTTCAACTGGCCCTACATGTCCATTCAATGATCCGAATGAGCGAGTGAAACAAAAAGACTAAAGGACCAAAATTCTGCAAGCCCTTTCAAGAAGACTATATATATAGGACCTAATTTCTGACCACTTAGGAAGACACTCTTTTTTGTCTTCTGGGACCGAAATGGAATATGTAATGTACAAAGATTAAAGAACTGGACGTACTCCCGTGTAAATCCATCGCCGTCATCAAGAACACTCTCCATTTTGTAAAATACtagtctttattttcattttgggttttttttttcttttctttttttgtaaagaacaaaatacgtacaaataaaatgaagaacatCATATGCGCAGTAAACGAGCGAGACTTAGCGGGAAAGAAATTTCCAAGCAATTATAAGAAATGTCCTGTGTCTATGTAtctctgttttgtattttttctggTTCTAAACCAGTTTTTTCTGTGATTCtatactaatgatttttgataTAACCTTTTGCTTCTTATAATGAGTGCGATATATGTTGTTGAAGATATGTTCTCCAAGAATTAAAAATTGAAgtgagaatttaaaaataaagaaaaacgtTAGACAAATAAGACACAGTCTAATCGCAATGACAATTTCACTGATGGTTGAACCTTCCCCCACTTGATGCTATGGACATGCAACTTCGGCAAATCTGACCTCATGGACATTTTAAAGGAGAGGACACCggtgaaactttttttcttggtcgtatgtgtgtgcgagtgtgtgtgttgagtcAATCATCAGTCAGAgataaaagacatgaaaaatcaaaagcacttttaatatatcattttcaaatacattttgtttgtttcgtcTTGATATTTTcgctatttctttttttttttttttttattggatgttgcctttcatttttttgctcaaTCCATGATATGCCTGTGCAGAAGGGTCGCGTGAAGTTGTGTGATGGTGACTATACTATTAAAAAGGAAATAGGCAACACTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55331 lncRNA upstream 8428 18350686 ~ 18353465 (+) True G37495
TU55328 lncRNA upstream 82100 18279536 ~ 18279793 (+) True G37492
TU55327 lncRNA upstream 83088 18278579 ~ 18278805 (+) True G37491
TU55326 lncRNA upstream 164351 18197203 ~ 18197542 (+) True G37490
XR_006251053.1 lncRNA upstream 241245 18105099 ~ 18120648 (+) True LOC122345897
TU55333 lncRNA downstream 3977 18373499 ~ 18390066 (+) True G37497
TU55340 lncRNA downstream 16488 18386010 ~ 18388002 (+) False G37501
TU55341 lncRNA downstream 16488 18386010 ~ 18388002 (+) True G37501
TU55385 lncRNA downstream 309074 18678596 ~ 18750055 (+) True G37540
TU55490 lncRNA downstream 553780 18923302 ~ 18924676 (+) True G37618
XM_043240614.1 mRNA upstream 349099 17907408 ~ 18012794 (+) True adgrv1
XM_043240159.1 mRNA upstream 462271 17896074 ~ 17899622 (+) True polr3g
XM_043239047.1 mRNA upstream 768207 17591913 ~ 17593686 (+) True LOC122345176
XM_043239052.1 mRNA upstream 775541 17554410 ~ 17586352 (+) True rasa1a
XM_043240097.1 mRNA upstream 834540 17526024 ~ 17527353 (+) False LOC122345691
XM_043240789.1 mRNA downstream 279243 18648765 ~ 18675929 (+) False slf1
XM_043240788.1 mRNA downstream 279245 18648767 ~ 18676675 (+) False slf1
XM_043240787.1 mRNA downstream 279246 18648768 ~ 18676675 (+) True slf1
XM_043240790.1 mRNA downstream 436462 18805984 ~ 18814930 (+) True fam81b
XM_043240550.1 mRNA downstream 463293 18832815 ~ 18842452 (+) True nol6
TU55097 other upstream 992125 17364869 ~ 17369768 (+) False LOC122344991
TU54920 other upstream 1800152 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 1801161 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 1801161 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 3641406 14718532 ~ 14720487 (+) True G36640
XR_006250965.1 other downstream 473297 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 473297 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 569291 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 569291 18938813 ~ 18940895 (+) False G37626
XR_006251073.1 other downstream 592800 18962322 ~ 18999279 (+) False msh3

Expression Profile