RNA id: XM_043240212.1


Basic Information

Item Value
RNA id XM_043240212.1
length 2005
RNA type mRNA
GC content 0.41
exon number 12
gene id gpr107
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7286568 ~ 7300729 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACAGAAGATACCTATCCTCTTGAGAAAAGAGGCAAAAATTACTCATTTCAGGTGGGACATGAAGTGGTTTTGCTGAGAATTCATGGGGCtttgaaaatattatttttacttcAATGTCACAACGGATGAACAGCAAGGCctttataacttttatttctACAACTGCTACTCCATGCCAATGAACCAGGACAGTACTTTGTCAGACATGCTGCCTTTCAGCATCGATATCAACATCGTGGAGAAGAATCCGGACAGCTTTCTCTCTGCAGGAGAGATTCCATTACCTAAGCTTTACATCTGCATGTCCATGTTCTTCTTTCTCATCGGCACGCTGTGGGTTCATGTTTTGCGTACACATAGttctgaTGTTTACAAGATTCATTGGCTGATGGCTGCTCTTCCATTCACAAAGTCACTTTCTCTTATTTTCCATGCAATTGATTACTACTACATTTCCAATCAGGGTTTTCCTATTGAAGCCTTGGCTGTGGTCTATTACATTACTCACTTGCTGAAGGGGGCGCTGCTGTTCATCACTATAGCATTAATAGGAACTGGCTGGGCCTTTGTTAAGCATATCCTTTCAGATAAAGACAAAAAGATCTTCATGATCGTCATTCCCCTGCagGTTCTGGCCAATGTGGCCTACATCATAATTGAGTCCACAGAAGAGGGCTCCAGTGAGTATGGCCTGTGGATGGAGATCCTGTTTCTGGTAGATCTGCTGTGCTGTGGGGCCATTCTCTTTCCTGTGGTCTGGTCCATAAGACATTTACAAGAGGCATCAGCAACAGATGGGAAAGCTGCCATCAATCTGGCTCAACTGAAACTTTTTAGGCACTACTATGTGATGATTGTGTGCTATATTTATTTCACCCGCATCATTGCCAGTCTCATCAAGGTCATTGTTCCTTTCCAATGGAAGTGGCTTTACCAGCTGCTGGATGAGCTGGCAACTCtgaccttcttcttcttcactggACACAAGTTCAGGCCGGCCTCCTACAACCCCTACCTACTGCTGTCTGTGGAGGATGAAGACATGGAGATGGATGATGTTGTAACTACCTCAACAGCCATGGGAGAGGGCGTTAAGAAAGTGAAGAAACTGTCCAATGGACCGTCAGAGGAGAGGGAGAGCATGGCATAATGGAAGAAACAATCCTTTGTCGATTCTGTGTGCCTCTGGACTTTGTGGCCAGCTACTGACGTGGGATATTCATGTGCTAAATTCCCATTGGACCTTCTCTCATGATCACATGTGAAGACAAAGCGTTCCATATCCACATATATGTCTATCTCTGTAAATGTTGCACAGACAGTATGGAGAATTCACATTAAGGCACTCCGTGATTCTTTTTGCCACTGTAGTTTTAATTGATATGCTCGGTgctgtgctttattttattatcttgaagattgcgtgtgagtgtgtgtgtgtgtgtgcgcgtgtgtgcacatcttttttttatttggttctttttgtttttatttatttatttatgacctTCCTACACATTGCTTGATCTTGGAGACTCTGTGGCACTTTAACAGGTACACTCTAGTCAAATGAAAGCCTGTGTGTGATTCAGCTATTACTTCAACTATTTCCTGATCTAAGTTCTCAAAACGTataatttgtatgtaaatatgctGGCCCTTAAAACATGCATAACCCAgattaatgttacaaaaaataagaTGTACAGTTTTCAAGCTTAGTCAGATTTGAGGACAGctgctttgtattttttcagtatttgtgTGTTAATAAGTATGGGTGACGATGGATTTTCAGGAAGTAGATCCAGTGTGTCCAGAAAcatgtatttcaaatgtattgaacatggattaaaatgatttttcaggGAAATTGTAATTTATGGTTGCTGATGGTACAATgaaggcttttattttgatgttaaatattttgcttTCTTTCAGTTATCTTTGAGCAAGCTTTATGAAATTGTGTTTCAGTATTAAATTGTGCAATGGTTTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250915.1 lncRNA upstream 48049 7222397 ~ 7240710 (+) True LOC122344649
TU49887 lncRNA upstream 49613 7222418 ~ 7239146 (+) False LOC122344649
TU49878 lncRNA upstream 120617 7166608 ~ 7168142 (+) True G33857
TU49873 lncRNA upstream 141143 7147035 ~ 7147616 (+) True G33853
TU49872 lncRNA upstream 142753 7145060 ~ 7146006 (+) True G33852
TU49918 lncRNA downstream 28618 7329347 ~ 7329619 (+) True G33887
TU49919 lncRNA downstream 32740 7333469 ~ 7333778 (+) True G33888
TU49903 lncRNA downstream 42480 7343209 ~ 7344078 (+) False G33878
TU49945 lncRNA downstream 119411 7420140 ~ 7440356 (+) False G33891
TU49935 lncRNA downstream 121075 7421804 ~ 7443225 (+) True G33891
XM_043240193.1 mRNA upstream 8616 7276985 ~ 7280143 (+) False ntmt1
XM_043240194.1 mRNA upstream 8616 7277012 ~ 7280143 (+) True ntmt1
XM_043239708.1 mRNA upstream 131524 7149158 ~ 7157235 (+) True ptpa
XM_043238984.1 mRNA upstream 154826 7124120 ~ 7133933 (+) True lrsam1
XM_043240525.1 mRNA downstream 3487 7304216 ~ 7318648 (+) True ncs1a
XM_043240174.1 mRNA downstream 20270 7320999 ~ 7326029 (+) True fbxw2
XM_043240724.1 mRNA downstream 33648 7334377 ~ 7336547 (+) True gas1b
XM_043239063.1 mRNA downstream 45261 7345990 ~ 7355235 (+) True dab2
XM_043239064.1 mRNA downstream 45261 7345990 ~ 7355235 (+) False dab2
TU49701 other upstream 306766 6978548 ~ 6981993 (+) False kank1b
XR_006251122.1 other upstream 337030 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 337393 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 338001 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 338478 6950211 ~ 6950281 (+) True LOC122346219
TU49900 other downstream 37739 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 37739 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 73177 7373906 ~ 7449497 (+) False LOC122345182
TU49933 other downstream 119411 7420140 ~ 7440775 (+) False G33891
TU49922 other downstream 124976 7425705 ~ 7446216 (+) False G33890

Expression Profile