RNA id: XM_043240214.1


Basic Information

Item Value
RNA id XM_043240214.1
length 2398
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122345769
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16400432 ~ 16409920 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGAGATGTTGAGAGTTCAATGATAGTTCGCAGGAGAAGATCTTGCAGTAATGAGTCTTTGTAGGTAAATCGGATAGCACACACCTCAGCACACAAAGGCACTGGAGATACTTGGAGGACTGGAAGGAACTCAGGAGACACTTGGAGAACTAAAAGGAACACATGAGGTAAGTAAAAAGGTAGGTAATATAAGCACAGTGAGTTCTCTTCATAGGTATGAGATCGGACAAATGCCGAGGGTGAGATGTGCTTTTATACTTGGTCTTGATTGGATGAGTGGATTAGTGACAGGTGCAGGTGATCGTTGTGATTGGTTGGTGACTGAGTCTGGCCGATTCATGACAATACCCCCTCCTCCACAGTTCGCTCCTGAGGACCCCTGCATCGTGGTGACCTACTTCTGCCCTGAGGTGCAGGAACATCGGATGGTTGCCTAGACCAGGTGGAGACCAGTGGAGGCTGGTAACTGAGTGGGAGGGAGTCAAGTGGATGGATGGCGTAAGGAGTTCTGAACCCAGAAACTGGTTCCAGGAATCCTGGTGGCCATGGCAGGAGGTTTGTAGGAAACACCCCACCTCTTGTATCCTTCCTTCTGTTTATCCATTTGCCTGAGGGTGATATCCAGAGGTGAGGCCAATGGTCACACTTAGAAGCTTGAAGAATGCATTCCATACTCTGGAGATAAACTGTAGTCCACGATCTGAACCAATGTCTTTGGGAATGCCGCAGAATTGGATAGGTGTAACCAGAGACGATTCGGCACAGGCAAAGGGAGTAGCTTGCCAGTTAGTAGATGAGGAGGGCTTTTTGTCTGGGCATCCCTGAACAAACCTTCCTACATCCCTTGCCAAATTTGGCCACCAGCAGAGAGAGGGTTGTGTTCGCCCCTGGGTGGCCAGTGCCTAGAGAGGAGTGAACAGAGTGGATTAGTATAGTGGGTTGGGAACATGGAACGTATTATCGCTGACTTAGAGGCGACTGAAGAAGTGGTCCATTGGATGGGAGTGACAATCATTTCTGATGGGATGATGGGTTCAGGGTCTTTATCATTCTCCATACAATTGTGAATCTGTGACAAGGTGTCCGCTTTCACATTCCTAGGACCTGGACGatatgaaatggaaaaatttAATCTGGTGAAGGAGAGAGTCTACTTTGACCACAAAAGGAAGATCAGGATCAGGAAGAACCAGGAGAGGTGCACTGGTAAATGCTTTCTTGAGGGTGGTGTAAGCTTTGCCTTGTCCATTTGACACCAGAATGGGAGATGTTGTACTGGAGGAGCTGCACTGTAGGTTGGTGGAAGGTGCATTTCTAAGCCTTGAGGTAAAGCTGGTGTTCTCTCTGCCTTTGAAGGACCGCCACAATGTGGTGGCGATGTTCAGCCATACTTCGGGAATAAATGAGGATGTCGTCGATTTATACAATGACAAATCTGTGGAGGAAATCCCAGAGTACCTCATGCATAAAGTCCTGGAACACAGAGGGGGGCATTGACGAGTCTATAAGGCATGACAAGATCACAAAGGCAGTCTTCCAATTGTCCCTCCTCACATATCCAGATGAGGTTATATGCACTGTCTAGCTTAGTAAAGATGGATGCTGGGACAAGGGGAAAGGGATTCCTTTTTTGAGCAGAACACGTCCCTGAAGGGGGCATACTAGGTGGGTATATCCATGAATCTCTTTTCTACTGGACTTTCAATGATTGTAGAATTCACTTGCAGTGGTTTAGAAGAAGAACATGGAGGGGACGGTATATTCGAGAAACAGTCCTTGCCCCACTTAAAGACTTTCAGACAACAGGTAAgataaaatatgtttgtttatttacaacacTTTGTAAGCAGATGTCAGTCAAGCCGGAGATGTTTCAGGTAAGTTAAGAGTTCAATGAGAGTTTCAGCGGAGGAGATCTTGCAGTAATGAGTCTTTGTATCTTTGTAGGTAAACCAGATAGCACACACCTCAGCACACAAAGACACTGGAGATACTTGGAGGACTGGAAGGAACACAGGAGACACTTGGAGAACTTGGATGAACACAGGAGaGGTGACACCCAGTCCAGTGAAAACACCCTCCTCAGAAACCTCACCTGTTAGCTCGACCCGTCAGCACCGGGATTCTGATCGCTACTGTCAGCTCTGTAATGCTTGGTTCAACAATCCTGGAATGGCTCAGCAACACTACGACGGCAAAAAGCACAAGAAAAATGCAGCACGAGCAGACCTACTGGAACAACTAGGGAAAACTTTAGACATGGGAGAGATGAAAGGTTTAAAACGCTGCTACACATGCGACGTCTGCAGTGTCACGCTGAATTCAGTGGCACAGTATCATGCACACCTGCAGGGCTCCAAGCACCAAAACAAGTAAGTGTCAACATGCACCTCATg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54896 lncRNA upstream 4870 16391837 ~ 16395562 (+) False LOC122345998
TU54816 lncRNA upstream 303427 16095985 ~ 16097005 (+) True G37155
TU54774 lncRNA upstream 346424 16053246 ~ 16054008 (+) False G37123
TU54772 lncRNA upstream 346535 16053246 ~ 16053897 (+) False G37123
TU54775 lncRNA upstream 346613 16053032 ~ 16053819 (+) True G37123
TU54917 lncRNA downstream 64788 16474708 ~ 16485115 (+) False G37227
TU54978 lncRNA downstream 250601 16660521 ~ 16660743 (+) True G37260
TU55011 lncRNA downstream 377910 16787830 ~ 16812417 (+) True G37286
TU55017 lncRNA downstream 417205 16827125 ~ 16827476 (+) True G37291
TU55036 lncRNA downstream 479277 16889197 ~ 16889977 (+) True G37308
XM_043240613.1 mRNA upstream 5134 16391797 ~ 16395298 (+) True LOC122345998
XM_043240348.1 mRNA upstream 10788 16379355 ~ 16389644 (+) True LOC122345865
XM_043238291.1 mRNA upstream 148660 16144894 ~ 16251772 (+) True tmem8b
XM_043240449.1 mRNA upstream 311519 16087941 ~ 16088913 (+) True LOC122345915
XM_043240808.1 mRNA upstream 316677 16076241 ~ 16083755 (+) True nos2a
XM_043240931.1 mRNA downstream 133915 16543835 ~ 16554564 (+) True LOC122346216
XM_043240527.1 mRNA downstream 625875 17035795 ~ 17162890 (+) True edil3a
XM_043240528.1 mRNA downstream 625876 17035796 ~ 17162890 (+) False edil3a
XM_043240526.1 mRNA downstream 625880 17035800 ~ 17162890 (+) False edil3a
XM_043238282.1 mRNA downstream 819474 17229394 ~ 17253899 (+) True LOC122344732
TU54012 other upstream 1679945 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1748521 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 2095128 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 2095128 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 2107932 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 74082 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 74082 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 76700 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 954949 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2432899 18842819 ~ 18847674 (+) True arsk

Expression Profile