RNA id: XM_043240262.1


Basic Information

Item Value
RNA id XM_043240262.1
length 5328
RNA type mRNA
GC content 0.44
exon number 8
gene id arid3c
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15374137 ~ 15434869 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCCGATTAGtttcaaataaagtttaaagcGTTTGAAGAGAAGCGCGCGCAGGAAGCCGCTCAGCTGTATTTCTGTTGGCTGAGTGCAGACCCTGCCCTGATTGCCTTATATCCATGTGTATTGACGTGTAGAGAGCAGATGGAGGCAGAGGGACTGATCTGATCTCTAGTCCTCAGAGGTCATTCTCGCTACAGTTACAGCCACTTGTTGCCAAATCGCCGAGAGACCGCGAGCGCTTCGCGAAGCCGTTTTCATAAAGAGCTATTTCTTTGCTTTCGCGGCGCGCATCTAGATGTTAATACGGGAATACAACGACTTCTGACATTGTTTGGGGGAAAAAAGGTCACTTTTGAGCAAATTCTTCGCATTTGACGGGAGAAGCATGGTTGACAACACAAGCATAGCAACTAAATCTGCACTGCAAGCCGCTTTCTCGTCGGCGAGCACTCTTCCTCTGCTGGTCAGCTCCTCCGGCGCTCACAGTCACTCGAGCGGCGGCAGCGGGATGAAGCTGGAGGCGGTCATGGAGAACTTACAGCGACAGCAGGCGGCTCGACTCGCCCTGGAGGAGAAACTCCGCCAAGCCGAGAAGGAAAAAGACATCAGGTCTATGGTGGAGTCGCAAATTCATCAGCAAGCTATCGCTTTCCACCACTATCAAGCAGCGGTGAGGGGAGCGTTCGCCTCGGGAGCCCCGAACTCGAGCTCCGGCCACCCGCGCGAGCGCACGGCCGAGTCCGACATCGACGACGAGGACGACGACCCAGACCTGGACCGCGGCATGGACGATGAAGACCGCGACTTGGAGGAAGACGACAGCATGAACGAGGCCGGAGGGGATGAAGATTTGGAAGGACCCCTAGCTCATTACCCGCCGCGCCTTGCTGTTTATCCCGGTGCCGGGCAGTCTCCAAAAAGTACCCCGATACATCTATCCAGAGTCCAGCCAACCTATCCGGCTCCAAGGCAGGCTGAATCACCGAGTGCTTTGGCACCACAAGCACAATCGCAGCACCACGAATGGACTTATGAGGAGCAGTTCAAACAGCTGTACGAACTGGACGATGATGAGAAAAGGAAGGAGTTTCTCGATGATCTCTTCAGTTTCATGCAAAAAAGAGGGACTCCAGTGAATCGGATTCCTATCATGGCCAAGCAGGTGTTGGATCTCTACACTCTCTACAAGCTTGTCACCGAAAAAGGCGGCTTAGTGGAAGTCATCAATAAGAAAATATGGCGCGAGATTACCAAAGGCCTGAACCTCCCTACCTCCATCACCAGTGCGGCTTTCACCCTCCGAACACAGTATATGAAGTACCTCTATCCTTATGAATGTGAAAAGCGGGGACTGAGCTCTCCCGGGGAGCTTCAGGCAGCTATTGACAGCAACCGTCGTGAAGGCCGGAGACAGAGTTATGGCTCCACCCTCTTTAACTACTCTCCCGTGGGCACCCCCACCCTGCTGGCTTCCCCAAAACTCCAGATGCCCCACATCAGCATGCCCACTCCCAACGGTGGGCACATGACTCAGACCCCTGTCATCAAGAAAGAGGACTCCATGCTGTCCAGCTGCCTGACCAACAGGGTGGGCATCCCTGTGTCTTTGGCGGGCCACCACAGTGCAGCGCAGGCGGCCGCCGCTCAGGCTGCAGCTGCAGCAGCTGTGCAGGCGGCCGCATTGGAGCAGCTGCGGGAGAAGCTGGAGTCTGGAGAACCACCAGAGAAGAAGGTGATGCTCATGGCAGAGGAGCAGCAGAGGATAATGCAACATGCATTACAGCAGAATCTCTTCGCCATGGCAACCCAGCTACCCATGAACATCAAACTGAACAATAGAGATGATAGACAAGAGACTGCATTGAACCTGTCTACCAACGGCATTAGCAGCATCAACATGTCAATAGAAATAAATGGGGTTGTCTACACAGGGGTCCTGTTTGCCCGTAAGCCAGCCATAGGTTTCATACCAGGCAGCCAGCGAGTCCATCACCAACACAGCTCTCAGGGAAAGAGCAGCAGCCCAGGGCTCAGCACTCAGATGCAGccgtcctcctcttcctcctccaccgCCTCTTCACACGGACCAGCCACCTCCCCTTGAGCCCACAACACCTCACTCAACTCTCCCCCGACGTCAGACAAGGCAGGGTCTTTAGGTCATTCTGCTGgaccagttttttttctgtctcctTCGATGTACAATGTacactttttactgtttttctaaCCCTTCCCCTGCAATCAGGACAGGAGCGTACATCACCGaaaaaaactttcattaaaGGGCCGAGCGCCGACAGCTGTTAGCCGCACATTTGAGGTGTGGTACATTTACATATGCAGCAAGTTGCAGCTTGTAATTTTGTTCTTCTGAGGATGCGTTATTCAGCGTGGAGCAACTAAAACAGACTGAGTGACAACGCCATGAACACAAGGAGCGATGTGACGCTCGAGCGAACGGGATGTTCCTCAGACAGAGTGAATGTTGCCTCAGAGCAAGATTCTTCACTTTCCTACACCGATCCTGAAATTTGGGCATCCTCATCTTTAACTGTCGCATTCTTGAATCAAACAGCAAGAGCTACTATCAGCTATTACCAAAGAGGAAAAAGTGCAGCATATTAGCGTTTTATTTGAACAGTACGACAATTCATGCAGAGTCTTATCACCACCATCACACATATCCGACGCCATTGCAAAGTTACCAAAAATCTATTATCGAGCTGATATTTGAATATGTTGATTTTAAGCAAAGCACATCCCATTTAACTTGGGCATCAAATAGTCAGGGAGAAAAagttatttactgtattactgcttaaatgtatgtttgtaaagATATCGTTTTATCCATCAGAGCAGTCATctacacaatatttaaaatcacaaatgcaAGATCGGTCATGTATAACTTGATATGGAGGAAAGCAGACAGGATTATGTCTGCTATATTCTCTCATGACTGGTTTTGGCCCGCGGCCGTCGCGAAATATATTCCATTGATTGGTGAGTTATTTGGGGAACACTTGTCGACAGTGTTTAATGATTTTCCACCACCTCAACTCAGCCCATGTTTTATAGCAAAGTGTTCATTAAATGGTTTAGTAGACGGAAAACAGGTCAAACTGGTTAATGCAGGTTTCAGAAGCGGAGGGTCAAATAATATTGCGACGTGTGACTGTGAGCTGGATGTTAAccataaaaaaaccaaaccaaaaaagaGAGGCTCTGTAGAAGATTATGTGCTGTGTGTGATCACGCTGAATGTGGCTCATCTTAGGCATCCGCTCGTGTTGTGAATAGAATCCAGCTTTCATTACGTTTTCAACAATGCACTTGCATTTGAGAGTTCACCTCTCGTCCTTTATTCCATTCtccatattattttatttttttttgctcgaactcgtgtttatttcttttgcttcTCTTTTCTGTTGGTAAGGAAAAGAGAGGATAttattgtgtcatttttttttttagaattcagTAGACGATTTCaagttgtatttattattacttctaTTCTCTTCCTTTCGTGTTGAAACTTGGGCTGTTCGAGAAACAtcgcttttatttaaagaaagaaagagtcgtACTACAGCCCAATACCTCACAAATCCTGCAAACCTGTACACAGATAATAGATTATGAAAACAAGATATAcctcatttatttcatttctattatttttattgtgaagccacttgaaaatgttttttcaacaaatcactggatttttttttttttctattttgtattgttttaccAAAGAAGGGAATATATGATGAACACACATCTACCTCATTTGTTATAGACTGTGCCAACAACATAATCACAGCAGCCAGTTTTTAATCATAGCCTTTCTGGTCCGAATTCACTTTTGCCTGCGTGATTTGTGCTGCAGAACCAGAGGCCGGACCACACGGGGCTCGACATGCCATCAGTTGCTTTGCTTGTCCGTTTTTGTCAGCGTTTTTTTCTTTACGCACCGGGGGGAAAATGAGATACCAGAAGGGTTCCCATCGAGCTTATTCATTACAGTATCAGTAGATCTAAAACACATCTTATGAAACATATCTCAAGTTAAGCTGCGACCTTGGGCGTTTTCgttaattaaagtgttttagcTTTACGGTTCGCAGCAGTTCCATTGATGCCAGTGTTTGAGTCGTCATTTCTGTTCGCAACATAACGTGACTTTCAGAAAATATGTAACCTAGTCTAAGTTAAAAGTAACTAAAAGAAAtcggttttcttttttttttataatgtctttAGTGGGATTTGAATGTGGAGACGTGCTCAGAACTTCTTTTTTACGAATACCAAAGATCTGACGATATTCTTGGGTTGACGGTTTCTGACCCAATGCTGTCGTTCGTAACTTTGAATCTCAAGcagcagtaaaatgtttttatttgatcctGCTGCGGCAAAACTTGATTTTAAGCACTTGgatcaaaatgttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccaagctGTATATTCAGTTAGTCTCAGTGCACGGATGGCAATCTAAGAATGTAATAACAGTTTCCAGAGTTTTAGCACAATTAGCGATTAATGAAACGAGTAAACCTGaccatcattttgttgttgtatagGTGCAAGGATTAATGGATATATAGTCTATATTTATGTGGAATTACAGAGGGCACAATCAATGCACAATTGTCTGATTCCTGTTGTTCGATGTAATTTACCTCTTGATCAGCGTATGAAGAGACCTTGCTTATATTTTTTCACAGCAGTGGCACAGTCTATTCCTTCACATGACTGTCTGTTCTCTCTTCAGCTCATGTCACTAGACTGCAGAGATTTTTAGAGCAAATCCTGGACGAACTCTggagaagcaaaaaaaagaaaaaaaaagaaaaacacgaaTCAGAGTGAATCCGTAACCAAAGCTTTTACGAAACCACGTTCACAGGCTTACTGATGACAATGTTGGAACATTTGTTCATAAAAAAAGACTATCAATTTAGATaacaattaagaaaaaaaaaagattcactcatgtgcttaaaaataacatgttgtTTACCTTGTTTAGCTATGTCAACGATGCTATGCTGGTAGATTTTAGATCCTATTATACGCTGTGTATGaagcttatttttcttttattcacttTGGATAAATccagtgcattatgggaaaGCTGGATTGTGGTGCTCaggggttaaaaaaaagaagaaaaaaactggtgaaagattttttttttttgttttgtttgtttgttttgccatTGACTTGTAGCATAATTAGAAATAAAGTACTGCTTTCCACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54221 lncRNA upstream 31316 15327099 ~ 15342864 (+) True G36793
TU54177 lncRNA upstream 73824 15295704 ~ 15300356 (+) True G36765
TU54174 lncRNA upstream 78624 15275657 ~ 15295556 (+) True G36762
TU54142 lncRNA upstream 166754 15195528 ~ 15207426 (+) True G36739
TU54153 lncRNA upstream 197233 15174397 ~ 15176947 (+) True G36746
TU54273 lncRNA downstream 19611 15454480 ~ 15455695 (+) True G36830
TU54279 lncRNA downstream 19611 15454480 ~ 15477032 (+) False G36830
TU54300 lncRNA downstream 59789 15494658 ~ 15494950 (+) True G36847
TU54308 lncRNA downstream 70305 15505174 ~ 15505753 (+) True G36852
TU54425 lncRNA downstream 143249 15578118 ~ 15583662 (+) True G36926
XM_043238181.1 mRNA upstream 62514 15308839 ~ 15311666 (+) True sub1b
XM_043240846.1 mRNA upstream 200343 15171061 ~ 15173837 (+) True si:dkey-3h3.3
XM_043240365.1 mRNA upstream 357427 15006607 ~ 15016753 (+) True ndufs4
XM_043239466.1 mRNA upstream 374763 14921572 ~ 14999417 (+) True arl15a
XM_043240089.1 mRNA upstream 475355 14880875 ~ 14898825 (+) False cspg4ba
XM_043238415.1 mRNA downstream 9497 15444366 ~ 15450522 (+) False pias2
XM_043238418.1 mRNA downstream 9498 15444367 ~ 15450522 (+) False pias2
XM_043238416.1 mRNA downstream 9511 15444380 ~ 15450522 (+) False pias2
XM_043238417.1 mRNA downstream 9514 15444383 ~ 15450522 (+) True pias2
XM_043238419.1 mRNA downstream 9514 15444383 ~ 15450522 (+) False pias2
TU54012 other upstream 653693 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 722269 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1068876 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1068876 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1081680 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 1049133 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 1049133 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 1051751 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1930000 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 3407950 18842819 ~ 18847674 (+) True arsk

Expression Profile