RNA id: XM_043240348.1


Basic Information

Item Value
RNA id XM_043240348.1
length 6906
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122345865
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16379355 ~ 16389644 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTCAGCGCGCCGCCGTGCGAAATATGGGGGCGCGCTCTTTATGGCAGGTCTCAAAAGAGGGGGAGCAGCAGCGCACGAGCGCGCCGTCGTTGTCAGGGACGGACGGGGTACAGCTGGGAAAAACACATCCTCACGCACGCACACCCCCGTCTCCGTTACGCACGTACAtaaggcaaaaacaaaagcgACTCTAAAGGAGGAGAGAGCGGAGCGCGAGCATGCGGCGAGGAGCAGGCGCTGCAGCAGACCTTTGTTTGTTTCCTGGAAACCCTGGAGCGCGAGGGAATAAAATGGAGTGGTAAGGGGCTCCGAGGCGCGAGAGGCGCGTCCACCTGCTGCTACCGGGGAGGCAGTCAGAGAGGGCAAACATGCTGAGACCGCTGCATTGAAGGGGGTTacgaaaacaacaacaacaactgcgTATGACAACATTCTGCACGCCGAGCGATCAAACGGAGTCTTTAAAGCGGGCGGGACGGGTGTAACGGGAGGCTGGACAGTTGTAATTATGTTAGTGAGAGAGAGATTCAGTTCAGACTGATGGATGTTCTACAGGAGTCCCGATACTCAGGGGCAGATCGCAGCCCCTGCCCAAGAGACGTTAGTGAAAATGaaTCACATGACCCGTTGGCAGATGTGTCACATGATCTAAGGCGCTGTGATGACATTGCTCCTGCGGCGCTGTCCCTGCCCTCCCTCTGTGGCCAGAGTCAGACCTCTGAAGGTCCTCTTAGCCCAGCTGACCTGCATGATGGGTCTGTCTCCAACACCacctctctgtcctctctctcttcattttcctctctttcctccctttcgtctctctcttctgtgccctgttccaaacctgtgacGCCCTGGTCTGTGCCGCAGACCTGTGACAGGTCGTCCCTCTCTAACATGGACTCCAGGGGCGGAGACTGCCTTAGCTGTCTGATCCCCAAAAATCAGACAGAACCGGAATCCTGTGAGTCCGTACTCGGCTTTGCCAGCATCAATTTGCAATGCCTTGGCCCCGCCCCCAGCGCAGGTCGCTATGGTGACCAGGTTCTATCAGACCAGCTGCTCAGTGGCCCTGCCCATCCAGCTGTTACCAATGAGGGGGCTGAAGAAGGGAGGTCGATGCAGGAGAGCGAATCAGATGAGGACCCTGCATCCAGGAGCATATACGAAGGTCTAGGAGAGGAGGCACAGGACTGGAGCTGTCTAGAGACTCTCATCAGTGAGAGTCGTATGGAGCTATTGGACTTATGCTCCCGCAGCGAACTTGCAGTAAATCTGTTCTGTGAGGAAGATGTGGAGAATTACATGTTTCAGGAGGAGGAGACTTCACTTGGCACTGATGTCTGCTCACTCAAGATACGCTATGAGTCCTATCAGGATGGAGTGCAGGAGAGGAGTGAGTCTGCCTTACAGGATGAATCTCAGCTAGGTTTCTTTCCTAGCTTACCTTGCAGTAGAAAAGAGGGGCCAAAAGAGAAACCAGACCAATCCGCTGAGATTAAGGCTGATGACCACGTGACCCCCACTATTAGCCCAGACAGTAACTTTCTTTTTGACCTCAGTAACTCTCCAGAAGATTCCGGTGAATTCAGTGATGACAGCTCTTGCACAGGCTCCCCAGACCATGGGCTCTCCCTTCGCCATGGCCGCTTGTCCAGAGAAAACTCTAGCTCCTCCAGCCAGCTAAGCTACCGCCTCAGAGCCAAGAGGAAGGTGGCCTACCGAGAAGACTACTTGTATGATGTGGACTCAATAGAAAGtgagaaaaatgcagaaaaacgaGAAAAAACCCCTGCTGGGTTTAAGAAAGAGCGTGATGACGACTGGTGCCCAAAGAAGAGGCGGCGGTCAAGTAGGAAGGACCCACctgtcattataaaatatataatcattaatcGTTTTAAAGGCCAGAGGCACATGAGAGTGCGTCTGGGGCGAGTCGACCCATCACCTGCTGTGGTCTGTCTGAGTCCAAATGCTCTGCTTCACTATGAGAGACTTGCACCATTAAAAGCATACTggcaggaaagagaaagagagcagcaGGAGAAGAATAGATTAACAGCAGCAGAAACAACCAAACGTCTCAATGGCTGCAAAAGACCAAGCACTGCTCCCAAACGCAAGCACAGGATGGCCAGACTCAGGATCCAGCAGATCCACACCGTACAGACTTCCCTCCCCAGCCAAACTATAGTGGTCCCCATCCACAATCAACCAGGGGGGACCGAATCCCTGAAAAGCACAGAGGAACCAAAAGAGGACATTACCTCCGTTACACACACTGCCAGGGCAAAAAGCAGAAcacaggagagagaggaaagaagaAAGGCAGGCAAAACAGGGAAGATAAAGAAGTTCAAAAGTGAAGCAAGACTTCGGTTGAAAAAGTTAAAAGAGGCTGAAACACAGGAAGTCCCAGAATCCTCTGAGATTGAGCAGTGCAGCCCATGTTTACCAGAAAACCTTAGTAACTCTTTGGAAGGTAATGCCACAAATGAAACCTCCAGTAATGACCCTGAAAAATGCACTTTGACCCCTGCTGCTCCGGGGACTGATGGAAATGCTGAACTCCTTCCCGGGGGTTACCTGCAAACACTTCTTGAAGCCTCTGAGTCATCAAGCACTGCTAACATTAACTATTTTCATTCAGGGCTACAGAATCCCACACTTCAGCCAGTCCAGAGCTGTgttctctctcctccctctgAATCAGAGCTGCCTCACTCTCCTCCACCTATGAACCACGGGCCCCACCACACGCATTATACTGAGCCAAACCTTACTGAACCAAACCAGCCCATTTCATGGCCATCCCAACAATCTGCTGAACAGCTGCCCTTCTCCCCAGACATCCCAACCCAGTCTCCAATGATGCCATCGGGCTTTCCCACACCGTTGCCTGTGTTAGCAGGGGATAGCACAAATGTCACAGGCTTTGGCCAAGTGTCTCTGTCAGGGTGCAGAGTCTCATATGAAGAATCCCAACCCGATGCTGATTATGGCTTGAGTCCGACTGGCTCTCGGAGTGACGGTGTGGGGCGGCTGGTTAGCTTTAACTCCCTGGGGTCACTTTCTGCCACCTCTAGCAACTACAGCTCACTCAGcctgagagagggagaaagggagagagaagaggaaattGGTGAGATCAACGATGGCTTCTTGCCACATTGCAGCCCACGGCTCATCTTGCAGCAAAGTCTAGAGGAGGTTGCTCCACTTCGAGAGTCGACTGACCTCTTGGATATCTCCAACTTCACCCCTGACAAGTTCCGGCATTCATCGCTCTCTGAAATGTCACCACCGGACACACCTAACTCTTCCCCTCAACTGCTGGGGAACTGTGGTAAATCTGGGGAATTTTCTGAAGCAACAGAAGCAAATGTGCAATGGAACTGTGGAGTTGTCCCGCAGCTTAATCAAGACGGAAACCCACACCACCTACAGATACACTCTTTCAACACAGAGGAGGATGAAGTAGGGCTAAGGGATCACAAAGGCTCAACGAAAAAGGGTGGGAAAAATGGACAAGCCACCAAAAAGAGCAAAACTGCTAAAACAGCGAAAGGAGAAAAAGTAAAGCTCCCACGTCAGGGTTCTCGTTCTGTGCGGAAGATCAAAGCCTTGCTAGAGGGAAAAGCAGCCAAAAGTGTCGGAGGGTCAGGAAGTGGTGCTTCTTCCCCTACTCCGTCGCTTGGCTTAATTGGAGCTCAGGGGGAGTGGCCTATTACTGGGGGACTGTCAAACGATGACCAACGAGAATTCCAAGAGCCATCAAACATCCTGTCCAATATAGTGTCTGGTATGGCTGAGGTACAGCGTTTCATGAGGGCCTCTGTGGAGCCTCTTTGGGGGCCTTGTCTTTCACCCGGTCAGCATGCACTCCAGAGCCAGACGCTGAAGATTCTGGGTAATGCTGCTGATCTTAAAAAGCGGGGTGGTGCCTCAAGTGGAGGTCGAGGGAAGAAAGGGGCTGGGCGTGGTGGTAAAGCACTGCCTAAACTTCTCCCACCTGGCTTCTTTCCTAACCTCGGATTGGACTGTCTCCCACTTCCACACCGTCCAgcccacaaaaaaatgtatcgtCACAAAAGCAGCGCTAAGTTTGCCCGCGAGGAACTCTTAGCGGGTAAAAGGGACATAAAAGGAGTAGCACTGACCGCTTTGGTCGAGAAACGGAGCTATAACACTGTATGTGTTAAATCGGTGTCACAGAACCATGGTTTAGACCGAGCCCAGCGCCCTGCTCTGTCTCTCAGCAAATGGTTGCCTTCTGTTCAGGGGTCAAAGATCATGTGTAGTATTCTGTGCTAAAAATCGTTTCCCCTCATTTCTGTGCCAACCCCTCAGAACACTGGGCTTTGACAAGCTAAAAGAAAGCATCTTGACCGAGATGCTCTTGTTTTCTGAGGTTCTGAAATTTCACAagagatttttttcattgttgttatttgtttataaGTTGTGAAAAAAGGAGGTTCATTCATCTGTTCTCCAGTGAATCTCCTCCTGCCAGTATCAAAATGCTGTTGTACACAGACATATGCACTATTTACAAAACAAGAttatatcaaacatgtttaaattaatGTGCCAAACTATGAACAATTAAATGTACAGACATTTTTATCTACAtaaatatttgctgttttataatgtgGCAGTGATTGaggagcgtgtgtgtgcttgGGATGGGGGGGGTTGTTAATCTGAGATTCACTCCTGTTGCATCACATCTGTACAAACAGCTAGCAGCGAGGAGTCATCTCaacaatcagaagaaaaatgctgttggtttattttctatgttttacACTCCTGGCTAGTTCAAGATTAGAGGCATGAAGTAAGAGATGCATGATGAGAATTGGTGGAAGGAAGCTGAAGTGCTATAATGGCAGAGAAAAACATTGGTTGCCTTTCATTCTGATGTGTTTCTGGATGGTCAAAGATCATTGTTCGTGTGTAACAAGGTAAGAAAAGGATCATTCCTTCTTTATAACAAGACTCAATGCATTTTAACTCGCTTATGTCCCCAAGTTTCTAGTTTTGgtaaatatatttctctgtACCTCAACCCTCCAAACTGGTTAAGAACAGGACcaaatttttttctaatttgttgCTAGTgatgtgcatgcatttaaaacatgataTGGATATGTGCTGTGAATGCTGATCCCCTGTATTACTTTCTGACTCGCCTGTTTTTTCTTACCTGATCTCAAAACCATTGTTTTTCTATTGCTGTTGGAATGTTATTTGTTGTGTTATAAAAAGAGGGAAAGATGCCAACCTGGTTACCCCCATGTGCTGTTTACTGCATTGCTTCAGGATCTTTTTTCTGCAACTCCCTGGATCCCCTCTTTTGTGAATACctatttgaaaagaaatattttctCTTTGATTTTCCGCCCTTGCGTTTACAAAGTGTGAATCCCCTTTGAGTTGTTCAACACTGCATTGAATCGACAGCTAGTAGTTTGAGAACTGTTCCTCCATTTTCAAAGTTTAGTGGGTACTTGTGCAAATGCTGTAACATTGCTGTGAATGAATTAAGGTGAAATTACCGGAGTGTTGAAATGTCAAAGGAAACAGGTGCAGATGATGAGTGACATTCCACAGCTTGTGGTGTAATTCAGAAGCGATTTGTAGGGCCTTCCCAGCCAAATCAACCTCACCAAGCAAAAGACCAggaaatattagaatataagtTGTTTGTCCAAACGATTTCTTTCTGTGCTGAGTGAATGGAGATGTAACACGGTTGGTTCAGGTCCGTTGACTCAGGGAACCCAACTGCATTGACATCTCTCATTCCCTCAGCTGCCCATCTCAACATTCAAACCCGAGCTGTTCTCAGCACCGCCCCCTGCTGTACTGTTTTTACATAGCACTACAGTTGCTAAACCTGCAGGACATCTGTGATGCCAATGCAGGGTGCTCTTCTTCATATACTTTGAGAGCCAAGTTTTACACCAGTGAAAACTCTATAGCACACATCCCCTGCACTGACCGAAGcgttcatatttttgaaaagttcTTAAACAGTGTTATTCCCCTATAAGTGCATCATGTAAAGTTAAAACAGGCATATCAAAAACTTAATTGTGCCCTATTTATGAATGTATTATATTGTCAagttggaagtatttttttcatgatttatttGACACTACATTACTTGTAACTACTTCTGCCTTTTTTCATCAtcaaggaaaaaaagaaacactttctACTGCCTGGTCTGTCTTCACCAGGTGGATTCTCAATGAACTCTTgatgtaggaaaaaaaaataatgacctgtatatttttcattgtgccaatttgtaacatattttctaagtgtatatttttcttaGAAAGTGATGTGAGGTCGTTCTTACTGTGGCTTTGTTCTTTTCCCTTTTCAGCAAGTGAAAAGGTTGCTAATTGCcatgatgttttctttctttctttttctttctctctctcttatttgttttttgtttgtttgttttaaagccaaaaattgaaaatactataaaaaataaataaaaaactattgtaaaggagagagaaggagagcaaGCTGTGACTCTTTGTTGAGAGTTTTTGTAATTGGACCAATCTTGTTGTAAGAGTGTTGTGCTctagttaaaatatatattaatttaaagataaaaaaagaaaccatgAAAACAGACAGTGGAACAATAACACTAATTTGTGATCTCATTGCTGTTTTATAGATTTTCATGTAAATTATTctagtattttgtttttgttgtatctgtcacaaaagttgaaatatttgtgatcaAGCCTGTATGGTGACAAATGTAATATTGGTAACTTGCTGAGTTTTGTAATCATGTTTAtggaataaatattaattaaaagagcTTTTGATCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54816 lncRNA upstream 282350 16095985 ~ 16097005 (+) True G37155
TU54774 lncRNA upstream 325347 16053246 ~ 16054008 (+) False G37123
TU54772 lncRNA upstream 325458 16053246 ~ 16053897 (+) False G37123
TU54775 lncRNA upstream 325536 16053032 ~ 16053819 (+) True G37123
TU54896 lncRNA downstream 2193 16391837 ~ 16395562 (+) False LOC122345998
TU54917 lncRNA downstream 85064 16474708 ~ 16485115 (+) False G37227
TU54978 lncRNA downstream 270877 16660521 ~ 16660743 (+) True G37260
TU55011 lncRNA downstream 398186 16787830 ~ 16812417 (+) True G37286
TU55017 lncRNA downstream 437481 16827125 ~ 16827476 (+) True G37291
XM_043238291.1 mRNA upstream 127583 16144894 ~ 16251772 (+) True tmem8b
XM_043240449.1 mRNA upstream 290442 16087941 ~ 16088913 (+) True LOC122345915
XM_043240808.1 mRNA upstream 295600 16076241 ~ 16083755 (+) True nos2a
XM_043238845.1 mRNA upstream 364940 15985786 ~ 16014415 (+) False si:dkey-40c11.2
XM_043240613.1 mRNA downstream 2153 16391797 ~ 16395298 (+) True LOC122345998
XM_043240214.1 mRNA downstream 10788 16400432 ~ 16409920 (+) True LOC122345769
XM_043240931.1 mRNA downstream 154191 16543835 ~ 16554564 (+) True LOC122346216
XM_043240527.1 mRNA downstream 646151 17035795 ~ 17162890 (+) True edil3a
XM_043240528.1 mRNA downstream 646152 17035796 ~ 17162890 (+) False edil3a
TU54012 other upstream 1658868 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1727444 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 2074051 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 2074051 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 2086855 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 94358 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 94358 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 96976 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 975225 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2453175 18842819 ~ 18847674 (+) True arsk

Expression Profile