RNA id: XM_043240410.1


Basic Information

Item Value
RNA id XM_043240410.1
length 5701
RNA type mRNA
GC content 0.46
exon number 30
gene id fcho2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5983148 ~ 6019840 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGGGGCGAAAAAGCGAGCGAGGAGGTGGAGTCGTGTTCAGAGGGAGGAAAACCCAGCAGAAGagcaggaaaaaaagagaaaaaccaCCAGACACAACAACATCGGGGGGAGGACGGCGGATTAAACGTGCCAACTGAGGCAATTCAAATTAAGAGAAGTGAAGAGAAGAAGGGAGGACGGCAAGATGATAACGCCCTATTTCCTGGAAAATTTCTGGGGCGATAAAAACAGTGGATTTGATGTACTGTACCACAACATGAAGCATGGCCAGATATCCAGCAAGGAGCTGTCAGACTTCATCAGAGAAAGAGCCACCATAGAGGAGGCGTATTCAAGATCAATGACCAAACTGGCCAAGACTGCTAGCAACTGCTCTCAGCTCGGGACGTTCGCGCCGGTGTGGGATGTGTTTAAACAGTCCACCGAAAAGCTGGCGGCGTGTCACATGGAGCTGGTCCGCAAGCTTCAAGAGCTCATCAAGGAAGTCCAGAAGTATGTGGAGGAACAAGCCAAAAATCATAAGAAGACGAAGGAGGAGGTCTCATCCACGCTGGAGGCTGTGCAGAACATCCAGAGTGTGTCACAGGCCTTACAGAAGAGCAAAGAAAACTACATCAACAAGACACTAGAGCAGGAACGCATGCGCAAAGAGGGCGCCACACAAAGAGACCTGGacaagGCTGGATTGAAGGTCAAGAAAGCGACGGAGACGTACAAGTCATATGTGGAGAAATATGCCAACGCGAAGACGGAATTTGAGCAACGGATGACGGAAACCGCAGAGAAATTCCAGGGCATCGAAGAGGAGCATGTACTGCGTATGCAGGAGATCATTCATTCATACTGTCAGTCTGTTGAagagacacacatacagatagGAGAGGTGCAAGAAGAGTTTGTGAAAAACATGGAGAACACCTCCGTTGAGAGTCTCATACAGAAACTGTCAGAAAGCAAAGGAACGGGCAAAGAGAGACCAGGGCCCATCGAGTTTGAGGAATGTAATGTCTCGATCGCCACAGAagGCGCAAAACCCAGAAAAAGGAAAACCTTTGCCATACCGGGCCGACGGAGAGATAAAGACACGGATTCCACCGAATCTGCCGAAGTAGAAGCAGTTAACGCTTCCAACGGAGCTCCCCCGGGTTTCTACGGTGCTATAGATCTCCATAACGCCaATGTGCCTCAGCTGGACGAGGAGGGCTTCTGTATCCGACCAGAAGTCAACGAGAATGATGCCAAAGAGAACTCCTTTTATTCATCCAGTGACTCAGAAGATGAGGACGAGCCTAGAAAGTTCCACGTCCAGATCAAGCCCGTGCAGACAAACAACGGCACACACCAGCACAAAGCCACCATCGACGAGCTGAAGGCCTCCATTGGAAACATCACGCTCTCGCCCACCCCAGCTGTTCATATGAAGAAAAACCAATCCAGAATGACACGACAACAAACATTCCCTGCTATAAAACCAAAGTCAGGTGATGAACTGGCGCGACCCAAGATACCGCAGACATCCTTTAATGATAGATTAGCCAGTAATGACCTGCTGTCTTTGGATCCATTTGGCCCGACCGGCACCAGCTCCAGCTCCTCTATACCCCACTCAACAGACCTGGCTTGTCTCTTCTTAGCGTCTTTCCCCACATCTCTCCCTCTGCAGTTAAATGATGAGGTTTTTGAAGACCCAGCAGAAGTGGATTTACAATCGGAGCCCACCTCTCCTTCAGCAGTCAGTCTTGAAATCACCGAGGCTCCTTGTTTTCCCCTTCCCTCCAAACTCCCTCCTCCTGCCGGTCTTGTCAAGCCGTGCGCTCCGCCGTTCCCTGTactctcctctcctccctccACCTCTCCTTGGGAGCTCCCCGATGAGGCGGTGGCTCCCCTCCACCCTGGCCCAGCTCGAGCTATGAGTGTGCCTCCAGCCCTGCAGGCTGCTCCTAAGGACTATGctgcccacaagccccctctcAGTGCTCCCGTCACTGGTCCAGACGCGCTTACATCGTGGGCTCAGAGCCAGTGGATCGCCTTTAATGATGACTTTGTGCCATGTCGGGGACTGTCCCATCAACCAGCAAGGCCTCGGTCAGTGCCCGTTTCTCAGCAGCCCAAGTTTCTCTTCAGAGAGTCTGCTGACCCGTTTGGCAGCTTTGGGAGAGAGGAGGGTGCCCCCTCTCTAACCGGAGCACCTGCTCGACCCATGCAGGATGctcCAAACAGGCCAACCACTCCCCTGGGCACAGCAACCATTGTCCCGCCTCCAAGACCATTATCAAGGCCCAAACTGCCTGCAGGCAAACTGACAGGCATCAATGAATCTGGCCGACCGTTCAGCCCTCCTAAGATGTCCAGCTCCAGCCCGCCTCCCGCTGCTCCTCTGGCTCGTGCCGAGAGCTCCTCCTCTCTCAGCTCCAACACCTCCTTGAGCGCCAGCAACACACCAACTGTGGAGGACGATCTGTTCGTGGGAAAACTGCCCACGTTTGAGAAGAGATGTGAGACTCCTGCAGGGACATCTCGCGGGCCCAGTCCAGTGACACTGGCTTCTCAGGATGCATTGCCCATCGCAGTGGCGTTCACTGAATCAGTTAATGCCTATTTTAAAGGGGCAGATCCCAGCAAATGCATTGTGAAGATCACCGGAGACATGACCCTGTCCTTCCCCAGCGGCATCATCAAGATTTTCACCTCTACTCCATCTCCTGCTGTACTCAGCTTCAAACTCTCAAACACTAGCAAATTAGAGCAGATCATGCCCAACCAGCAACTACTGCACAGTGACTCCTCCCAGGGCGATACAAACACTAAAGACTTTTGGCTGAACATGCCTGCACTGACAGCGTACCTCAGGAAGAGCTCCGAGCAGAACCCTGCTGCATCCTATTACAACGTGGACGTCTTAAAGTACCAgGTATGTTCAAACGGGATTCAGTCAACTCCTCTGAACCTTGTGGTGTACTGGAAATGCACTACTAGTACTACAGACCTGCGAGTGGACTACAGATTCAACCCGGAGTCGATGCAGCCCCCTGCGTCTCTCACCAATGTACAGGTGTTAGTGCCCATCAGTGGTGGAGTCACAACCATGCAGTCACTTCCTAATGCCATCTGGAACGCAGAACAGAGTAAGTCGTTGTGGAAACTGAGTGATATCTCTGACAAGTCTGAAAATGAAGGCTCTGGTTCTTTGAGAGCAAAGTTTGAGCTTTCCGATGGTCCGTCCATCCCCGCCACCCTGGCTGTTCAGTTCTTCAGTGAAGGAAGCACTCTGTCTGGTGTAGATATGGAACTGGTCGGCTCCGGTTACCGTCTCTCCCTCAACAAGAAGAGGTTTGCCACCGGCCGCTATATGGCTGACTGCTGAGATCTGAGCAGGGAATGCAGGGAATCTGGAGGTTAACTTTCATTCTGTCGCTGGTTCACAATGATATTCGCGGAGGATCGTTAGGGGGGATGGAGAAAGAGAGCTGTCTGGGTTGAAGGCCTCTCACGCTTCTGTTTCCTCTCTCCGCGTTCTGAACGATCCGGTTCCAGTGAAGCACCTTCCGGAGATTCGAGatttttatactatattaaCGTAGCACTGAATATCAAACACTgtgtataaagaaaaataaaaaaaaaaaaaaggaaaaaagaaatgaggAACGACAGGATATTGGCGAATGAAATCATTAATCTTTGATACTTTTTTCGATCAGTTCAGACTTTTATAAAGTCAGAACGGTAGTGTTTGCTATTTTGATGTGTATAGTTAACAATTTGTAATATGGATTAAATGTGTATAAACATACGTATCAAGgcaaaaaaaggacaaaaaaaaaactgcactaaCAATCTTTCTGGATAGTTGTTGagcattcatttcttcatttgCGTTCACCCAAGTGTCAGCCACAAGGAGGTGAACgaaacgaaaaaaaaagaaactagagAAAAGCCTCAGCAATAGATCGCTCCATTCTCACGAGAAAGCCTTACTTCTTGTTTTCTATAACTGAGCATTGCACGTCTGATTAATTGGTTTTCTGTTTTCCGTTTTTTCTCTTCTGAATGTGCAATGAAGGTATAAGCTTTCGAAATGACATTTATAGATTGTTTTTCAATTTCAGTGCCATTTTCACTTTAACATTGTCGAGAGAACCTACTGGTTAGTTTTGTGTCTTGCTTAGCAGCAAAAGGAAACTTACACACTGACCTCAGTGcctctttttttgttacttaaaacaattatacagGACAATTTGCATGTGCGAGTCTAAAAGACCCatgttttcccctttttttatataacgaCCTTTCCTCTTCCTAATTTTTTGAAGTGCCAGTTCAGTTCTTTATGCTTCCTGATGGGATGACTGAAGGAAAACACTGCCTAAGCTTTAGCTTTTGTCCTTCAAACCCCCGTTAGCATGCTTTACCTAAACGGATGCGCTGCAAAGGAGCACACTGTTCCCGTTTTAGACGTCATCCCGGCCTTATAGACGTGTGCAGAAATGATACCAAAATAACTCACTGTGAGAAAATTCTAATCCAACCTGACTATTTGGGGAGATCCTCGTTGATAAACAGACcaaaatattgtgaatattaGCGTATCGAGATGAGTTACGAGCATGCACACTTTTTAGCGTAGTTTATTAACAACAGACTACCCATTTTTAGGTAAGCGTATTTTTAAGGGACGCTGCGTGTATATGTTTTCACCAAATGTGCCGTCACATCTGTTTTCGAGTGTTCAACGTTAATAATGACCTGAACGCATTAGTTTCTTAAATTTATGGctcaaatgatcttttttttttttttttgctttgagcAAGTTTGCCAAATACAAATCACAAGCACAACGATGCAATGAGCCAGTGGAGGTTTAAATGTGCGCAGGGTCTGACTGCCACGTGAGAGATTTCTTCATTTCGagattttcttcatttctttctttctttcttctttttttctggaacCCATTGGTGAGCGTTTGCGGTGCTTCGAGGGGGTCTGTCCCCCTCACGCAAGGGCTGTTTGCTTCGTTCCTTTTCAGAGGACCGCGTCTTCAAGGGCTACCCCGATCCCAGCGATAGCCAACACCATTTatacctttaaaatgaaaaacactaataaacacTAAACGCCACCAATGAAGGATGAATCTGAAAACAATGGCGTTCTTTACAATTATGTCTCGTTTCACCAGGAATTTTTCGATAGCAGCCTAACAGTTTTGTGAagtaacaacattttatattcaGAATCAAATCGCTGTCTTTATGTAcagggtatatatatatttgtgatttaaataCACTTGTATTGTGGTGTTGGTGTCAATACAGAGGCAGAAATTAACTGGTGAACATCCTGGTCAATGTAGCATTCGAATACAATATTTGCTTCTTTAAGTGAATATCAACTAATCGTGTAGTAAGCGAGCTGGTTCTTGCTGCCTCTACAGCCACGTCAATATTCAAAGTCATTTTGAAACtagtttcttcttttctttccatttaTGTCCACATTCAATGGCATGGtaaaacatttgtgattttgtttcttttctctttttttttttttacccacctaatgtaaatttttacaaatatttctgCCATGTTTCTCTGCTTTATGATGCTCTGTGTCggtaataaatgtgtaatatataaatctatacaaatataagaaatactACCGAA

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006886 intracellular protein transport biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0010324 membrane invagination biological_process
GO:0009790 embryo development biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0001786 phosphatidylserine binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function

KEGG:

id description
K20042 FCHO; F-BAR domain only protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49303 lncRNA upstream 85782 5863332 ~ 5897366 (+) True G33471
TU49270 lncRNA upstream 102619 5859290 ~ 5880529 (+) False G33453
TU49281 lncRNA upstream 112638 5817420 ~ 5870510 (+) True G33454
TU49269 lncRNA upstream 122251 5859290 ~ 5860897 (+) True G33453
TU49099 lncRNA upstream 443750 5526849 ~ 5539398 (+) False G33348
TU49349 lncRNA downstream 59243 6079083 ~ 6079423 (+) True G33492
TU49363 lncRNA downstream 105490 6125330 ~ 6165323 (+) True G33499
TU49366 lncRNA downstream 145565 6165405 ~ 6165623 (+) True G33500
TU49367 lncRNA downstream 146575 6166415 ~ 6166704 (+) True G33501
TU49368 lncRNA downstream 146894 6166734 ~ 6167250 (+) True G33502
XM_043240419.1 mRNA upstream 332 5959832 ~ 5982816 (+) True tnpo1
XM_043240140.1 mRNA upstream 24735 5956426 ~ 5958413 (+) True gatc
XM_043240135.1 mRNA upstream 28955 5920574 ~ 5954193 (+) True sgsm1a
XM_043238336.1 mRNA downstream 9786 6029626 ~ 6032632 (+) True tmem174
XM_043239785.1 mRNA downstream 72407 6092247 ~ 6094739 (+) False btf3
XM_043239786.1 mRNA downstream 72409 6092249 ~ 6096016 (+) True btf3
XM_043239165.1 mRNA downstream 85955 6105795 ~ 6162485 (+) False arhgef28a
XM_043239167.1 mRNA downstream 85955 6105795 ~ 6162485 (+) False arhgef28a
XR_006251052.1 other upstream 4564 5959835 ~ 5978584 (+) False tnpo1
TU49128 other upstream 333263 5604333 ~ 5649885 (+) False G33355
TU49131 other upstream 333263 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other upstream 335723 5625267 ~ 5647425 (+) False myo1ha
TU48849 other upstream 1360088 4622507 ~ 4623060 (+) True G33174
TU49351 other downstream 67422 6087262 ~ 6088562 (+) True G33494
XR_006250986.1 other downstream 227955 6247795 ~ 6254646 (+) False hexb
TU49600 other downstream 453507 6473347 ~ 6474191 (+) True G33664
XR_006251060.1 other downstream 773525 6793365 ~ 6824304 (+) False si:dkey-34e4.1
XR_006251059.1 other downstream 773525 6793365 ~ 6824158 (+) True si:dkey-34e4.1