RNA id: XR_006251052.1


Basic Information

Item Value
RNA id XR_006251052.1
length 2895
RNA type transcript
GC content 0.52
exon number 21
gene id tnpo1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5959832 ~ 5982816 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCTAGCCGGGCTCGAAGCCAGCGCTCTTTGGGGTCACATGTAGGGTTTCCCTGCCAAATCCCTCCATCCCGCCGGCGACCGGGCAGGCGCTAGGACCGGCGGGCGGCGCGGCGCGGAGGCTTATCGCCGTCTATGTGCGGTGATCCGGACCAGACCGAGTCCATGTATGTAAGCTAGCCTAGCGTCACCAGCGACACGACGCCCGCGAAACACGCTCGCTTTCGCACGGGTCTGTTCACGGTAAACCCCCGCACGGGCGTCTCCCCGATCTTTCGCTCGATAACAGCCGGTCTTGAAGCTGAAGGTCAAGGTGGAGGCCGTTATTTGATGTGAAAGGGTGTAGATCTGTGCGCctacggagagagagagagagagagagagagagctccaGCCACACAAGATGGAGTGCCAGTGGAAACCCGACGAGCAGGGACTTCAGCAGATCTTACAGCTGCTCAAGGAATCGCAGTCCCCCGACACATCCACGCAAAGATCCGTCCAACAAAAACTCGAGCAGCTCAATCAATACCCGGACTTCAACAACTACCTGATATTTGTGCTCACAAAGCTGAAGACAGAAGACGAGCCCACTCGGTCTCTCAGCGGTCTCATTTTGAAGAACAACGTTAAGGCCCATTACCAGAACTTCCCAAACGGTGTGTCTGACTTCATCAAAAATGAGTGCCTGCAAAACATCGGAGACTCCTCGCCGCTCATTAGAGCCACAGTGGGTATTCTGATCACAACTATAGCCTCTAAAGGGGAGTTACAGAACTGGCCGGAGCTTCTACCTAAACTCTGTTTACTGCTGGACTCAGAGGACTATAACACTTGTGaaGGGGCTTTTGGAGCTCTGCAGAAGATCTGCGAGGACTCTGCTGAGATCCTGGACAGCGACATGCTGGACCGACCGCTCAACGTGATGATCCCCAAGTTTCTGCAGTTCTTCAAGCACAGTAGCCCCAAGATCAGGTCTCATGCCATTGCCTGTGTGAACCAGTTCATCATCAGCAGAACACAGGCCCTGATGTTGCACATAGACCCTTTCATCGAGAACCTGTTCGCACTGGCAGGTGATGAGGAGCCCGAAGTGAGGAAGAATGTGTGCAGAGCTTTAGTCATGCTCTTGGAAGTCAGATTGGACCGTCTCCTTCCTCACATGCACAACATCATCGAGTACATGCTGCAGAGGACACAAGATCAGGATGAAAATGTCGCTCTGGAGGCCTGTGAATTTTGGCTCACGCTCGCCGAGCAGCCTGTGTGTAAAGAGGTTCTGTGCGGACACCTGCCTAAaTTAACACCAGTTCTTGTGAATGGAATGAAGTACTCTGACATTGACATAATCTTGTTGAAGGGTGATGTCGAAGAGGACGAAGCAATCCCGGACAACGAGCAGGACATTCGCCCCAGGTTTCATCGCTCACGCACTGTGGCCCAACAACACGAGGGGGGAGACTCCAtcgaggaagaggaggatgacgAAGATGATTTGGATGATGACGAAACCATCTCCGATTGGAACTTGAGGAAATGTTCTGCTGCTGCGCTAGACGTCCTGGCGAATGTTTTCAGAGACGATTTGCTGCTGCATATTCTCCCTTTATTGAAAGAACTACTGTTTCATCCAGAGTGGCTTATTAAAGAGTCTGGCATACTCGTACTGGGAGCCATCGCTGAAGGCTGTATGCAGGGAATGATCCCTTACTTGCCAGAATTGATTCCTCATTTGGTACAGTGTCTGTCTGACAAGAAGGCGCTGGTTCGATCCATCACTTGCTGGACTCTAAGCCGCTACGCACACTGGGTTGTTAGCCAGCCCCCCGACATCTACCTCAAACCGCTCATGACTGAACTGCTCAAACGGATACTTGACAGCAACAAGCGTGTCCAAGAGGCCGCCTGCAGTGCCTTTGCTACCCTGGAAGAGGAGGCTTGCACTGAGCTGGTGCCGTACCTCGCTTATATTTTGGACACGTTGGTTTTTGCTTTCGGTAAATACCAGCACAAGAACCTTCTCATCCTCTATGACGCCATTGGGACTCTGGCTGACTCTGTGGGTCACCATCTCAACAAACCGGAATATATTCAGATGCTGATGCCTCCATTGATTCAAAAATGGAACCAGCTAAAGGATGAAGATAAAGATCTTTTTCCTTTGCTTGAGTGTCTCTCGTCTGTGGCCACTGCCCTGCAGAGCGGCTTCCTGCCATACTGTGAACCTGTCTACCAGCGCTGTGTCAACCTGGTCCAGAAAACACTCGCTCAGGCCGTGCTCCACCAGACTCAGCCTGAGTTTTACGAAGCTCCTGATAAAGATTTCATGATCGTGGCTCTGGATCTGCTCAGCGGGTTAGCAGAGGGTCTTGGAGGGAACATCGAACAGCTAGTTGCCCGTAGCAACATTCTCACTCTCATGTACCAGTGCATGCAGGATAAGATGCCAGAGGTTCGGCAGAGTTCTTTCGCTCTGTTGGGAGATCTGACCAAAGCCTGCTTCCAGCATGTCAAACCTTGCATCGCTAACTTCATGCCTATCCTAGGCACAAACCTGAATCCGGAGTTGATATCAGTCTGCAACAATGCGACATGGGCCATTGGAGAAATATCCATTCAAATGGGTTCTGAGATGCAGCCGTACGTCCCGATGGTTTTACAGCAGCTCGTGGAGATCATAAACAGACCCAACACACCCAAGACGCTGCTGGAGAATACAGGTGCACCTCTCTTCGCAATATAAGAGACAATGAAGAGAAAGACTCTGCGTTCAGAGGAATCTGCACCATGATCACGGTCAACCCTGGTGGCGTGGTGCAGgactttatatttttctgtgaCGCTGTAGCATCCTGGATGAACCCAAAAGACGATCTTCGAGAAATGTTCTATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49303 lncRNA upstream 62469 5863332 ~ 5897366 (+) True G33471
TU49270 lncRNA upstream 79306 5859290 ~ 5880529 (+) False G33453
TU49281 lncRNA upstream 89325 5817420 ~ 5870510 (+) True G33454
TU49269 lncRNA upstream 98938 5859290 ~ 5860897 (+) True G33453
TU49099 lncRNA upstream 420437 5526849 ~ 5539398 (+) False G33348
TU49349 lncRNA downstream 100499 6079083 ~ 6079423 (+) True G33492
TU49363 lncRNA downstream 146746 6125330 ~ 6165323 (+) True G33499
TU49366 lncRNA downstream 186821 6165405 ~ 6165623 (+) True G33500
TU49367 lncRNA downstream 187831 6166415 ~ 6166704 (+) True G33501
TU49368 lncRNA downstream 188150 6166734 ~ 6167250 (+) True G33502
XM_043240140.1 mRNA upstream 1422 5956426 ~ 5958413 (+) True gatc
XM_043240135.1 mRNA upstream 5642 5920574 ~ 5954193 (+) True sgsm1a
XM_043240139.1 mRNA upstream 5642 5920574 ~ 5954193 (+) False sgsm1a
XM_043240138.1 mRNA upstream 5642 5920574 ~ 5954193 (+) False sgsm1a
XM_043240136.1 mRNA upstream 5642 5920575 ~ 5954193 (+) False sgsm1a
XM_043240410.1 mRNA downstream 4564 5983148 ~ 6019840 (+) True fcho2
XM_043240413.1 mRNA downstream 4564 5983148 ~ 6019840 (+) False fcho2
XM_043240411.1 mRNA downstream 4564 5983148 ~ 6019840 (+) False fcho2
XM_043240414.1 mRNA downstream 4564 5983148 ~ 6019840 (+) False fcho2
XM_043240415.1 mRNA downstream 4564 5983148 ~ 6019840 (+) False fcho2
TU49128 other upstream 309950 5604333 ~ 5649885 (+) False G33355
TU49131 other upstream 309950 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other upstream 312410 5625267 ~ 5647425 (+) False myo1ha
TU48849 other upstream 1336775 4622507 ~ 4623060 (+) True G33174
TU48610 other upstream 1815439 3605186 ~ 4144396 (+) False G33015
TU49351 other downstream 108678 6087262 ~ 6088562 (+) True G33494
XR_006250986.1 other downstream 269211 6247795 ~ 6254646 (+) False hexb
TU49600 other downstream 494763 6473347 ~ 6474191 (+) True G33664
XR_006251060.1 other downstream 814781 6793365 ~ 6824304 (+) False si:dkey-34e4.1
XR_006251059.1 other downstream 814781 6793365 ~ 6824158 (+) True si:dkey-34e4.1

Expression Profile