RNA id: XM_043240449.1


Basic Information

Item Value
RNA id XM_043240449.1
length 622
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122345915
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16087941 ~ 16088913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGTTGGCTGCTACGCATCGGGGTTACCTGTTGCTTAGCAACTCAGATAGCCTCCGAGTGAAAATTCGTGCATCTAGCATATTTCTACACGTACATGTCTAAAACTCACGATGCTGGACGCTGCCTTAAGTTCATACGGAGCACAGGTCGTGCTGGCTACATCGAGCGAAGAGAATCACCCACCGGAAAACATCATCGACGGAAAAACAGAGACTTTCTGGATTTCAACTGGCATGTTTCCACAAGAGTTTATTATCCGCTTCCCAGACAATATGAAGATTTTCACTGTTTCCATTCTCAGTTACAACAttaaaagGCTAAGAATAGAAAAGGGCATATCAGACGATGCCGAGAAATTTGAAGTGGTTGCAGACACCGAGTTTGAGCACACAGAGAGCAGCCTACAGGCTAATGATATTTCTGTAAATGTATTGAATACGACACACTTACGGTTTCTCATACTGTCTGGATATGATCATTTTGTCTCTGTTCACAAAGTTAGTGTACAATCATGAGATAATCTCCATCTGCCATGTCTTTCTGTAAACTCACGTGAAGTAACCAAAGTGGAtcactgtatatttttcttaaataaacaacattctCCTAATTTCTATTAT

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0007155 cell adhesion biological_process

KEGG:

id description
K19369 HSPB11; heat shock protein beta-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54774 lncRNA upstream 33933 16053246 ~ 16054008 (+) False G37123
TU54772 lncRNA upstream 34044 16053246 ~ 16053897 (+) False G37123
TU54775 lncRNA upstream 34122 16053032 ~ 16053819 (+) True G37123
TU54773 lncRNA upstream 34122 16053246 ~ 16053819 (+) False G37123
TU54639 lncRNA upstream 168656 15918506 ~ 15919285 (+) True G37047
TU54816 lncRNA downstream 7072 16095985 ~ 16097005 (+) True G37155
TU54896 lncRNA downstream 302924 16391837 ~ 16395562 (+) False LOC122345998
TU54917 lncRNA downstream 385795 16474708 ~ 16485115 (+) False G37227
TU54978 lncRNA downstream 571608 16660521 ~ 16660743 (+) True G37260
TU55011 lncRNA downstream 698917 16787830 ~ 16812417 (+) True G37286
XM_043240808.1 mRNA upstream 4186 16076241 ~ 16083755 (+) True nos2a
XM_043238845.1 mRNA upstream 73526 15985786 ~ 16014415 (+) False si:dkey-40c11.2
XM_043238843.1 mRNA upstream 73526 15985787 ~ 16014415 (+) True si:dkey-40c11.2
XM_043238844.1 mRNA upstream 73526 15985787 ~ 16014415 (+) False si:dkey-40c11.2
XM_043238861.1 mRNA upstream 109193 15951062 ~ 15978748 (+) True rhobtb4
XM_043238291.1 mRNA downstream 55981 16144894 ~ 16251772 (+) True tmem8b
XM_043240348.1 mRNA downstream 290442 16379355 ~ 16389644 (+) True LOC122345865
XM_043240613.1 mRNA downstream 302884 16391797 ~ 16395298 (+) True LOC122345998
XM_043240214.1 mRNA downstream 311519 16400432 ~ 16409920 (+) True LOC122345769
XM_043240931.1 mRNA downstream 454922 16543835 ~ 16554564 (+) True LOC122346216
TU54012 other upstream 1367454 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1436030 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 1782637 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 1782637 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 1795441 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 395089 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 395089 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 397707 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 1275956 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2753906 18842819 ~ 18847674 (+) True arsk

Expression Profile