RNA id: XR_006251059.1


Basic Information

Item Value
RNA id XR_006251059.1
length 3306
RNA type transcript
GC content 0.45
exon number 12
gene id si:dkey-34e4.1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6793365 ~ 6825366 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGGAACTTTGCTCCGCGTGAATTGCACCAGAGGTTGAAGAGAGCAACGCAAATAAAAACCTGTCACTGGCAATCCAGAAATCACTCGCAGCGCCTCTTTTAATAAACTTCTAGCCGAGGCACTCGAACGACTTGAGCCGAAGCCAGACTCGCATAAACGCAGCTGATGTCTGCGGGCTGAGAGAGGGGGAAAGAGAGGCGCCCAACCCATTTCTTTTGTGCCGAAGCGCCTGTGATTTCATTCAGCTTTTCCCGGGCTGCTACTATAATGGGCTCCTTCGCTTTGAACCGCTCTTGTATCCGCGACTCGTTTTCCGCCGGTTAAACCGGAGccgcctttttctttttcttttttttttgagttggCAGCAGTTCGGGAACTGGCTGATGAAATTTCTCGCCGAGCATCTGGACGGGTCCCAATGAAAATGCACGGGAGAAACAGGTACAACCTGGTGGACGATGTGGCGGATTCGCGGGTCCCGCTTCACAACGAGGAAGCGTATCAACACGGAATACACTTCCAAGCCAAGTATGTTGGCAGCCTGGATGTCCCGAGACCCAACAGTCGAATGGAAATTGTCGCTGCCATGAGAAGAATCAGGTACGAGTTCAAGGCAAAGAgcgtgaagaagaagaaagtgagCATAGTGGTTTCCGTAGACGGAGTCAAAGTGGTGCTGCGCAAAAAACCCAAGAGGAAAGAGTGGACGTGGGATGAGAGCAAGATGCTGGTTATGCACGACCCCATATACAGGATCTTCTATGTATCCCATGATTCTCAGGATCTGAAGATTTTCAGCTACATTGCTCGTGATGGATCCAGCAACTCCTTCAGATGCAATGTGTTCAAGTCCAAGAAAAAGAGTCAGGCCATGCGGATAGTGCGGACGGTCGGTCAGGCGTTCGAGGTTTGCCATAAGCTGAGTCTGCAGCACGCTGAGCTGAATGCAGATGATCAGCCAGACGGCCCTGCAGACGGCCAGAGCGATCAGTCTGGAGAAGAGCCCAGCCCTGAAGCTCGTCAGCTGACAGGGATGGAGCGCGGGATGGAGGATGTCACCGCAACCGACTCGCAATCCGCAAAACTCAGTGAGCAGGCTATGGATGACATTCTCCAGAGTCTGTCGGAGCTCAACCTGGTGAAACCTGGACAAACCCTACAGTCTCTGCAAGACCTGGAGGGCGTCTCTCTCTACACGCTATCCCCCAGCAGCCCTTGCTCTCCTTCTCTCACACCTTTGGCCACCCAACACCACCTCCAGTTACTCCAACAACAGCTGctacagcagcagcaacaaacACAGATCGCCGTCGCACAGGTGCAGCTCCTGAAGGATCAGCTGGCTGCAGAGACGGCCGCTCGTATGGAGGCGCAGGCCAGATCTCACCAGCTGCTGCTGCAGAACCGTGATTTACTGCAGCACACATCCCTGCTGGTGAAACACCTCAGCCAACTGGAGATCAGAGTCGGTGGAGCCGCACAGAAAGAGGAATCGCCATGGAGTAGCGCGCCccctcgttctctctctctcaacttGAAGAACCTCTACACCCCTCACTCAGACCAGCCCTTCACCTCCACTCCAGCAGGACAGCCAGAAAACCCTCCTGTTTCCTCCCACGCCGAGTCTTACCTCAATCTGCTCAACCTGCGCAGTGCTTCCACCATTACAGCCAATGGGAAGCCAGCGAGTGCGAGAAGTGAAGCGGGGCTGGACGCAGCAAGAAGGGAAGTCGCAAAGCTTGAAACCCGGAATTCAGCAGCACTTGATGAGAGGTGCACGTGTGAGGAGCCTCCCCTTCTGATTATCCACTTCCTCCTGTAACAGCCTTCTTCCTGTTCTCTAATCTTCTAACCCTCTCTGAcgctctctctccatctcatGCCCTCACCTGACCTATCCTCCTTTGTCTGAAATCGCTGATTTTTGTTTCCTCTCCGCTCCTCTCTTCTACACTTTACCAACCTCCTCAGGGGGACTGTGGGACAGAGATAAGtgcactcacgcacacacacacacacacacacacacacacacacacacatgcagaatgGAGACTGTCTTAAAGAATTGTGTACAAGCTCTTTTTGATGATTCAGCAACTGTTCACCACACAGACCCATCTCCCTGCTGTGATTTCCCTACAGTTCTGACCCAATGTCCTGACCTGACATGCCACGATAAGTGATAAAAGGCTTTCATCCTTGTATCAGATGCTAATTATCTGAAATCATGACAAGCGTTTGGATATTTTAACTGAGTTCTGTTTTTATAGTCCCACCTAGTGAAATCTCATTAGTCACAAATCCACACGACTATAGATTTTACCAAATTATTTTTGGCTGGGTATGTCATGTTACAAAGCAGTAACGGTGGGAAGTTTTTCCCACTAATTTGTTCAGTCTCTTGGTATAAGTCCCAGAAGATTAATTTAGACAATGTATTAAGTGACACAGAGTCatattatagtttattaaaaTTTGCATGCCAAAAAACTCTACAATGCAGAAATTTAAGCATCATAAAAATGACAAGCAgatcttttgtatttatttaatatattgtctTCTACATTCTGTATATTagcaaatgattaaaaagacaaaaaaaatcattttaattttgcttttactttttatactatggctttgctttaattttttgtgattttgtaacatgcttttgtcattttcaaatttccggatttaatatcaatatttttttagctttagttttaatactaaaaatatggAAGTTTATCGCTGAGCttaaaattaaaccaaatacACATTTCCCAAATAAacgtaaaaaatgttttattagttttacttTTGAACTAGCATTATGCCCCTGATTCAGTCAGAAAGCggactaaaaataaatggttcagttcattttgatagtccactttagacattctactaactgaAGGTAACTTTGGtaataattctcattaattcGCAACTACATTTCTACTGCCtgtcagagtagactgttagggtaggtttagggttaacaGAATAAATTGACATTAACCCGCAAAGTTTTTGATAGTGTGTCGTATGTTGTggattcatcaaaataaagtgtaagtaGACACCAAGCAGGCAGTCTACTAAAGACTGCTAGTTACCTACTGTTAGTATGTCTGAAGTGCACTTTAATCTTTAATGTAAAAGATTtgctcaaaaacactgatttgtgCCCACTTGGTAATGTACTGAACCTTTTACAATGTACTATTCcatgtaattataaaataatgttccaCTGACTGGGAAATTTTGTCTCCTTTGTGTG

Function

GO: NA

KEGG:

id description
K16513 NOS1AP, CAPON; carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49635 lncRNA upstream 96723 6617276 ~ 6696642 (+) False dab2ipb
TU49603 lncRNA upstream 298835 6475701 ~ 6494530 (+) True G33665
TU49666 lncRNA downstream 96587 6920745 ~ 6921639 (+) True G33708
TU49676 lncRNA downstream 105489 6929647 ~ 6930785 (+) True G33712
TU49702 lncRNA downstream 156559 6980717 ~ 6981993 (+) False kank1b
TU49863 lncRNA downstream 310136 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 310749 7134907 ~ 7135122 (+) True G33850
XM_043238316.1 mRNA upstream 30557 6652031 ~ 6762808 (+) True dab2ipb
XM_043240068.1 mRNA downstream 33721 6857879 ~ 6915413 (+) False garnl3
XM_043240066.1 mRNA downstream 33722 6857880 ~ 6915413 (+) False garnl3
XM_043240064.1 mRNA downstream 33722 6857880 ~ 6915413 (+) False garnl3
XM_043240063.1 mRNA downstream 33723 6857881 ~ 6915413 (+) True garnl3
XM_043240067.1 mRNA downstream 42160 6866318 ~ 6915413 (+) False garnl3
TU49600 other upstream 319174 6473347 ~ 6474191 (+) True G33664
XR_006250986.1 other upstream 538719 6247795 ~ 6254646 (+) False hexb
TU49351 other upstream 704803 6087262 ~ 6088562 (+) True G33494
XR_006251052.1 other upstream 814781 5959835 ~ 5978584 (+) False tnpo1
XR_006250955.1 other upstream 1145940 5625267 ~ 5647425 (+) False myo1ha
XR_006251123.1 other downstream 125741 6949899 ~ 6949965 (+) True LOC122346228
XR_006251115.1 other downstream 126053 6950211 ~ 6950281 (+) True LOC122346219
XR_006251114.1 other downstream 126528 6950686 ~ 6950758 (+) True LOC122346218
XR_006251121.1 other downstream 127132 6951290 ~ 6951366 (+) True LOC122346226
XR_006251122.1 other downstream 127500 6951658 ~ 6951729 (+) True LOC122346227

Expression Profile