RNA id: XM_043240526.1


Basic Information

Item Value
RNA id XM_043240526.1
length 1935
RNA type mRNA
GC content 0.51
exon number 10
gene id edil3a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17035795 ~ 17162890 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTATCCCTGCGGTGCCATATCCCGCTATCTCACCTACAGAGAGAGGGTGGGATAAATCTGTGATCGGAAGGGAGGTCAGAACAGTTAAGCCGCTGTACCTGTTCACCATCAGAGCAAAAGCGCGTCTTTCCCGCGGAGAAGTGAAACGCACTGATAGTGTCCCACCCATTTGGATTTTGCCGTTCGTTCTGTGCATTGGAAGCTCCAGGGCTGCCGGGGAGGAGCGAGACTCGTCTTTATCAGTAAGACAGCGCCGCTGCTCGAGCGCTACGCTGACCGTCCGCCGCGCGCAATCACCGTTTGATCGGGACCCGCGCGGAGCCTCTCCGTTATCTCGCCGCGCGCCACTGCAGCAGAAGGGGCAAGAGGAACTCCTGAGAGGACCACTTATTTCATCTCCGCTGACCCTTCCCGGGCGAAAAACACGGACTTAACTGACACCTGTCCTGGGAGATACTTAGTCGAAACCCTTTTTCGTGTGCCTCAGAAGTTTTAACCGTCCGTACCGTTGAACGTTTGTAACCTTGGAACTCGTAGCTGCTGTTCGGTGAGGATGGGACCGTTGCTCGTCTCCATCGCCCTCTGCGTGCACCTCGCTGTCCCGCATCTCGTCAAAGCAGCAGATGGTGAGGATCCAACTTCAGCAGGACCCTGCCATCCAAACCCTTGTCACAATGGAGGCACCTGTGAAATCAGCGAAACGTTCAGGGGTGACACATTCATTGGATACGTCTGCAAGTGCCCATCAGGCTTCAACGGGATCCACTGCCAGCACAATGTTAATGAATGTGAAAGAAGCCCCTGCAGAAACGAGGGGATCTGCACAGATCTGGTTGCGAACTATTCCTGTGAATGCCCAGGGGAATATATGGGAAGAAACTGCCAgtacaAATGTTCTGGTCCACTGGGCATGGAGGGTGGAATCATCTCCAACCAGCAGATAACAGCCTCCTCCACTCACCGAGCTCTCTTCGGCCTCCAGAAATGGTACCCTTACTTTGCCCGGCTAAATAAGAAGGGTCTTGTGAATGCCTGGACTGCTGCCGAGAATGACAGATGGCCCTGGATTCAGATTAACCTACAGAGGAGGATGCGGGTCACAGGAGTGATAACCCAAGGAGCCAAGCGCATCGGGAGCCCAGAATATGTTAAGTCGTACAAAGTGGCCTACAGCGATGACGGAAAAACCTGGAGGACGTACAAAGTCAAGGGCACGGACGAAGATATAATCTTCCGTGGGAATATTGATAACAACACTCCTTTCGCCAACTCCTTCACCCCTCCTATCGAGGCTCAGTATGTGAGGATCTACCCGCAGGTGTGCAGAAGACACTGCACTCTTCGCATGGAGCTCCTGGGTTGTGAGCTCACGGGGTGTTCGGAGCCAATGGGGATGAAGTCTGGCCATATTCAGGACTACCAAATCACAGCCTCTAGCATCTTCAGAACTCTTAACATGGATATGTTCACCTGGGAACCTGGGAAAGCAAGACTGGATAAACAAGGCAAGGTCAATGCCTGGACATCTGGACATAGTGACCAGTCCCAGTGGCTGCAGGTTGATATGCTTCGGCCAACAAAAATCACAGGCGTTATTACCCAGGGGGCTAAAGACTTTGGACATGTTCAGTTTGTTGGCTCCTACAAGCTGGCTTACAGTAATAACGGCGAGAGATGGTTTATATATCAAGAcgaaaaacagaagaaagacagGGTCTTTCAAGGAAATTTTGATAATGACACCCACAGAAAGAATGTGATAGATCCTCCCATCTATGCCAGATTCATCCGGATTCTTCCATGGTCGTGGTACGGAAGAATCACTTTGCGCGCAGAGTTACTGGGATGCACAGAGGAAGAGTGAAGACCCCTTTTCATTATCCCTTTGCAACACTTTGGTCCATATTCAATATAAACTGTGCTTGTAAAACATG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55036 lncRNA upstream 145823 16889197 ~ 16889977 (+) True G37308
TU55017 lncRNA upstream 208324 16827125 ~ 16827476 (+) True G37291
TU55011 lncRNA upstream 223383 16787830 ~ 16812417 (+) True G37286
TU54978 lncRNA upstream 375057 16660521 ~ 16660743 (+) True G37260
TU54917 lncRNA upstream 550685 16474708 ~ 16485115 (+) False G37227
TU55085 lncRNA downstream 187701 17350591 ~ 17350922 (+) True G37330
TU55096 lncRNA downstream 188266 17351156 ~ 17353096 (+) True G37333
TU55087 lncRNA downstream 191716 17354606 ~ 17357759 (+) True G37331
TU55088 lncRNA downstream 191716 17354606 ~ 17355806 (+) False G37331
TU55156 lncRNA downstream 363152 17526042 ~ 17527444 (+) True LOC122345691
XM_043240931.1 mRNA upstream 481236 16543835 ~ 16554564 (+) True LOC122346216
XM_043240214.1 mRNA upstream 625880 16400432 ~ 16409920 (+) True LOC122345769
XM_043240613.1 mRNA upstream 640502 16391797 ~ 16395298 (+) True LOC122345998
XM_043240348.1 mRNA upstream 646156 16379355 ~ 16389644 (+) True LOC122345865
XM_043238291.1 mRNA upstream 784028 16144894 ~ 16251772 (+) True tmem8b
XM_043238282.1 mRNA downstream 66504 17229394 ~ 17253899 (+) True LOC122344732
XM_043238284.1 mRNA downstream 97262 17260152 ~ 17316269 (+) True LOC122344734
XM_043239182.1 mRNA downstream 156970 17319860 ~ 17328414 (+) True LOC122345236
XM_043239181.1 mRNA downstream 156970 17319860 ~ 17328414 (+) False LOC122345236
XM_043239178.1 mRNA downstream 158574 17321464 ~ 17328414 (+) False LOC122345236
TU54920 other upstream 474059 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 475068 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 475068 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 2315313 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 2383889 14647489 ~ 14651911 (+) False fgf5
TU55097 other downstream 201979 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 1679929 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 1679929 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 1775923 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 1775923 18938813 ~ 18940895 (+) False G37626

Expression Profile