RNA id: XM_043240648.1


Basic Information

Item Value
RNA id XM_043240648.1
length 5532
RNA type mRNA
GC content 0.42
exon number 21
gene id msh3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18962322 ~ 19014100 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTCACCCTCCGCGGTACAGCGGAGTTCGCGTGCGCGGGACGCTGGATACGTCACTCACGCGCCAGCATGATCCTAGTCTCTTTTTTTAGAGACTACTTTTAATCATCAGAGTTTTGGCCTGTTTTCTTAAAACAAGGCAACACGTTAATAAGCGgttaatgctgtaaaatgaatgCAAGTGTCAAAAATGTCAGCGCATCCAAATCCTCAAAGAAGTCCAGCACACAGACAACCATCAGCAGATTCTTTACAAGTGCAAACGATAAATCTCAACTGACTGACCAGCCTGGGATTAAACGCCAGGACGGACGCCATGAGGGCAGAGGAAAGAAGAGGTTGTCTGATGGAGGAACGTCCTCAGAGAAACGGCCCAAACTCTCTCACAGTGTGGAGGAGGAGTGCATGGCGACCCCCAGCTCCTATAAGATGGTATCCTCTAGAGCCAGCGTCAGCCGTGCCACCCTGGCGAGGCTAAAAGATTTCAGCTGCCCCGGGAGCTCAGACAGCCAAGCCTCCGATCGGCTTGTAAAGATGGACGTGGAGCATTCTTCCCCACGACAACACAATGCAATGCGTTCCTACAATCAGCTGGAGGAAGAGGTCAAAGAAGAGCCTATTAAGATTAAACAGgaGGTTTCCTTCAGTCAGCCTGCTAAGAATGCTGTGATCAAAAAGAGTTCAGAAGAGCCTGGTGTTCCCAACAGGAGAACCAAGACTATATACACTCCTCTAGAGGAGCAGTACATGGAGATCAAAAAGCATCAAGCAGACACAGTGCTTTGTGTTGAGTGTGGCTACAAGTACAGGTTCTTCGGCGAGGATGCAGAGaTCGCTGCAAAGGAGCTCAACATCACTTGTCATCTGGACCATAACTTCATGACGGCCAGCATCCCTACTCATCGCCTGTTTGTTCACGTTCGGCGACTGGTCTCTCAGGGCTACAAGGTAGGTGTGGTCAAGCAGACCGAAACCACAGCCATCAAGGCCTCCGGCACCAACAAGAGTTCTCTGTTCACACGGCAACTACATGCACTTTACACCAAATCCACGCTTGTGGGAGAAGATGTCAATCCTCTGCTCAAGCTGGGAGATTTGGAGCAAGCTGAAGATGTGGTGCAGGACAGTGGTAACAACTATTTgatgtgtgtgagcgagagttTTGATAAACAGAGCAAGGAGCTGACTGTAGGGTTGGTGGTGGTCCAGCCGAGCATTGGGGACCTGATGGTGGATTGTTTTAAAGATAACGCTTCCCATTCAGAGCTGGAATCCAGGGTACTAAAAATACAACCTGTAGAGATCCTGGTGCCTTCCAACATTTCAGAGGTGACTGAGAGGTTATTACGCAACATCGCTCTGTCCAgTGTTCAAGCTGATGACCGGATTCGCCTTGAGAAACGAGAAAGCTCCATGTTTGAATACCCAGCCGCGATGGGAATTATCAAAGATTTCTACAGGGACACCCCTCATTCAGCTGGGGGAAACCAAGAAAAGGGTTCCTACTCCCTCTGTATGAGTCTGGAGAGCCCCATCATCTGCTGTCTTGGTCCTGTGATCCAGTATCTGACTGAGTTTAAGCTAGCAAAGATTTTACTATGTTCCAGCTCGTTCAAGCGGCTGTCGAGTGACGCAGACCACATGCAGCTCAATGCGGCTACCGTGAAGAATCTGGAGATCCTGTGCAACCAGACCACAGGTTCAGTAAAAGGTAGTCTGCTGTGGGTTCTGGATCACACTCAGACTCCATTTGGGAAGAGACTGTTAAGAAAGTGGGTGAGCCAGCCGCTGAAGTCTGTGATTGATATCCAGGCTCGGCAGGAGGCAGTAGCAGAAATTTTGTGTTCTGAGTCCAGTGTCCTTCCCTCACTCCAGTCTCTGCTAACTCGTCTACCCGACCTCGAGAGGGGACTTTGCAGTATCTACCACAAAAAATGCTCTACTCAGGAATTTTACCTCATCTCCAGCACTCTCTCTCGCCTGAGTGCTGAGCTTCAAGCCCTCATGCCTGCCATCCAATCACAGCTCAGCTGTGCTCTTCTAAAAAACCTCCTACAGGACATACCTCAGCTTTTAAGCCCCGCCTACAACTTCTTAAAAGTACTGGATGAGAAAGCTGCAAAGACAGGTAATAAGACAGAGATGTTTGTGGATCTGACTGACTTCCCAGTGATCCAAAACAGAAAAGAGGAAATCCAGAGTGTCCTATCAGACATAATGGAGCATCAGCGAGAGGTTCGCCTTGTGTTAAAAAACCCTTCTTTGGACTACACCACAGTGTCTGGCCAGCAGtttctCATTGAAGTAAAGAACAATATGTCATCTATAGTCCCAGCAGACTGGGTCAAAATCAACAGCACTAAGGTTGTGGGCCGCTATCACACCCCATTCATTGTAGAGAAACATCGGCGTCTGCAGCAACTACGAGAGCAGCTGGTTATTGACTGTAATCACGAGTGGATCAACTTCCTTCAGCTATTTGGGGACCATTACTACATCCTGAGGAAAGCAGTGTGTCACCTAGCAACCATGGACTGCCTCTTCTCATTGGCTCAGGTtgctaaagaaaataattactgCAGGCCAGAGGTTCATGAAGATAAAAGTCAGATTTTGATCACAGCAGGCAAGCATCCGGTCATTACCTCGTTGATGGGAGATGAGGATCAATATGTCCCCAATGACACTCACTTACAGGGGGATGGCAAGCGAGCCATGATCATCACTGGGCCCAACATGGGTGGCAAGAGCTCTTACATCCGACAGGTTGCTCTGGTGACAATCATGGCACAGCTGGGATCCTTTGTTCCTGCCAGAGCGGCTTCAGTGGGCATTGTAGATGGCATATATGTCAGCCCAAAATTGCTGTTATGGCAGCCAGACTGATTCACTGCAGAAACGTCTGACGGGATCTTTATGGATTGTACATCATCAATTGCACGAGCGCTGTTTTATCACGAATAACGAGTTCAAatgattttatacaatttaGAAAGTAAGCCCAGTTAATGTtatgttaaattttaaacacaatattgtCCGTTTTGCTGAGAAAATATTTCCTTTAAAGCCACATCAGAATTGTTCAATTactgaatgaatctgcattttgaaCGAATCCAGTGATTCAATAGCCTGTTCATAAACTGAGCTACTTGattcctgaatgaatgaatgaatgaatgatgatataaagacatttattaccACCTGTTGACAGTGTTTATTTAGAGtatcatttcaataaaaactaaatctgaaaAAGATGACTGTTAATAACTATGCtagtaaaacacatttgataTAAACAGTATGATTGCCATTAATGCAATTCTTAAGGTTATGACCTGTCAACCTTTTAAAACGACTCGTacaaacacgcccccacttttctacatcacagagtggggTAATTTTCTTACACCACccaaatatttatgcaaagaaagaaggtggCGCAGTTATTCTGGCTGTAGTGTTGTTAAGGGTGCCATTTTCAGGAGActgtgtattattgtgaaagtgaaactactttgtctctgcttccaaaagaggactaGAAATCAGTGGCTAAGTTGTATTTACAAGAACAGTTCATATTAGAGTGTGTTAAGCACATTTACAGAGAACTATTTTCTTGGAGCAGTCTATGCTAACTGCGCTATAAAGTTGAGAAATTCTagctctgcaaggacagtcagGTGCTTCTGACTCAAAACCTTTAACTAAGttgcattttcttattaaaagaacctgctacttactattcaaatgcaagttttgagcagtgaagagTAACATtagtgcttgttgttttgttgtttgtcgtTTCTCGATTACAAACGGGACACATTAAAGCACAGGACTAAGTCATGATAGTCAgttatgtccccactggattTAACAAATGTcttgtttgtaatgtgttttattgtttttgtcatagGACTGGGACATGGCATCTTGTTATGGTAAGGAGAGTAACATTTCCAGCAGATGCTTGAGGTATTCTGGCAATCACAGTGcgctggatagctggccaatcaaagcacacctcgctttttttttttttagaacgatgagctttgtacaaattgaCCAGAAAGAAACAGATTTTTTCAGAAAACGGGGCTTATAGGAGAAACAATTATGTTCAATATGTggaaaatcatttgttttttgcaccttaaaccacataaacgcattgcattacaccgaatgctaaaaagaacattattttgtgtaacatcaaatgacccctttaaaatggaaatgtggTCGTGCAGCTTCCTGGGAGAAATCTGCTGAcagaaacatgaaaatgaaatgccTGTAGTCAAACTGTTCGGAGGttaaaatacaagaaaacatttagaGACAAAAGCAACAAATAGAATGAAAGTGGCAGTTTGTTAATGTGTTTCACAGCAAAGCTACATATACCATCTGTGTTCCCTCTCGAGCCCGGCCAATAGCTGCACTATTAGTCCAGCTAAAGCTTGTCTGTggcattttattcaatttaaaagtaGGATGAAGCCCCTTACCAGGATAATGGGAATGATTTTCAGATTAGCTGGTAACAAAGAATAATTCTGTGTTGTGGGGATTATGTACATGACCTGTAATGGCCAGCACATTATTTGGCTCATATCTTGCTTAATGCTATTGCAATTGGTCTGAATTAGGGAGactttacattttgcttttctGCTAACCAtcggaaaaagaaaaaagagaactCCTGCagtacaaatataccccagagGTTTGTTCACTTCTACATCATGATTGTTCAACAACGTCTGCTTTTTCCTGCACTCTCAGCAACTTATGAAATAATGAGGTGCTGTGTTTGCCTAAGCCATTCGATATTTGTGTGGTGTTCATATTTGATGGTAGTGACCTTTTATAGCTTTGAAAATGTTATCAGCAGCcaaatcagttttttattttacttaaacacTGCATAGTCACACCAGTAATGCATTTTACGAGTATTTGTAGGTCCCTTTCCTCTGCCTTTCATGGTTAAGAATTGGTTTTATCATTCTTAATTGTGACTCAAGTCTTTGTAATGAGCCTAAATACTGTCACTGAAGAACCTTTATAACTCTACAGTTACAAATGCTGTTTGTAACTTAAAACCCTAATGGTTTGATCAGAGTTAAAAATCTGTCATCCACTTGCTCTCATGTCATTGTAAACCTATAtggctttattttgtgtttataacaCTAAGGGCAGAATATTCTGGACTTttagtataataaaatgcaactaaaatTGTCAAAATTGAGCATTGTCCACACATAGTTCTTGATTTATATGGATGACTCTGATGACACTTTTCTGgtgctttttatctttttttgaagtttaaagGCCCATCCGTTGTAATTGTATTGATATGATTAACTGCCATATATAAGTTACttgtttgtgttccacagaagaagaaaagtCTTACAACGTGAGagtgatgcattttaattttttaccaaCATAAtgcttgtttaattaaatttttggt

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K08736 MSH3; DNA mismatch repair protein MSH3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55492 lncRNA upstream 35320 18925437 ~ 18927002 (+) True G37620
TU55491 lncRNA upstream 36889 18925210 ~ 18925433 (+) True G37619
TU55490 lncRNA upstream 37646 18923302 ~ 18924676 (+) True G37618
TU55385 lncRNA upstream 212267 18678596 ~ 18750055 (+) True G37540
TU55341 lncRNA upstream 574320 18386010 ~ 18388002 (+) True G37501
TU55663 lncRNA downstream 288737 19288016 ~ 19288328 (+) True G37734
TU55830 lncRNA downstream 594791 19594070 ~ 19647075 (+) True G37843
TU55986 lncRNA downstream 760432 19759711 ~ 19760204 (+) True G37951
TU55992 lncRNA downstream 795164 19794443 ~ 19867398 (+) True G37956
TU55996 lncRNA downstream 873963 19873242 ~ 19874144 (+) True G37958
XM_043239697.1 mRNA upstream 601 18953377 ~ 18961721 (+) True ubac1
XM_043240126.1 mRNA upstream 40807 18914683 ~ 18921515 (+) True pomt1
XM_043240092.1 mRNA upstream 48242 18900511 ~ 18914080 (+) True LOC122345689
XM_043238315.1 mRNA upstream 71016 18890017 ~ 18891306 (+) True gcnt4a
XM_043240609.1 mRNA upstream 72387 18885057 ~ 18889935 (+) False LOC122345996
XM_043239619.1 mRNA downstream 16032 19015311 ~ 19068269 (+) True rasgrf2b
XM_043239621.1 mRNA downstream 16032 19015311 ~ 19068269 (+) False rasgrf2b
XM_043239624.1 mRNA downstream 16032 19015311 ~ 19068269 (+) False rasgrf2b
XM_043239623.1 mRNA downstream 16032 19015311 ~ 19068269 (+) False rasgrf2b
XM_043239622.1 mRNA downstream 16032 19015311 ~ 19068269 (+) False rasgrf2b
TU55500 other upstream 21427 18938813 ~ 18940895 (+) True G37626
TU55503 other upstream 21427 18938813 ~ 18940895 (+) False G37626
XR_006250965.1 other upstream 114648 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other upstream 114657 18842819 ~ 18847665 (+) False arsk
TU55097 other upstream 1592554 17364869 ~ 17369768 (+) False LOC122344991
unassigned_transcript_958 other downstream 418819 19418098 ~ 19418169 (+) True trnap-ugg_3
TU55947 other downstream 708059 19707338 ~ 19709926 (+) False nrarpb
TU56198 other downstream 1144004 20143283 ~ 20151585 (+) False lix1
TU56199 other downstream 1149142 20148421 ~ 20151585 (+) False lix1
TU56217 other downstream 1185756 20185035 ~ 20513916 (+) True G38092

Expression Profile