RNA id: XM_043240657.1


Basic Information

Item Value
RNA id XM_043240657.1
length 5654
RNA type mRNA
GC content 0.48
exon number 19
gene id camsap1b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19837755 ~ 19860160 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTGCTAGTCCTCATCTCATTAAGCAGCATTAGCTGTTAGCTGCTTGTAACTGTATTTCACTCAAAACATGCAAACCAGTTTACGGTCAGAACAGCAGCTCTCACAGATGGTTAAATGTACCTCTCCATACGGTGGTCGCAGGATGGACGCGGAGCTGGGTGCTGACAGCGCCCGCAGAAAGATGGAGGCAGCGGGCGAGGCGCTGGAGATCGTGCCGCTGGAAATGTATGATTCAGCCCGAGCCAAAATAGCGGCTAATCTTCGATGGCTGTTTGCCAAAGCCTTCGGTATCGATCACATCCCAGAGGACCTGCGAGACCCCTTCTACACAGACCAGTATGAGCAGGAGCACATTAAGCCCCCTGTGATCCGGTTGCTGCTGTCCTGTGAGCTGTACTGTCGCGTGTGTGGCCTCATTCTCAAAGGAGACCAGGTGGCCTCTCTGCAGTCCCACCTGTCAGTCATCCAGGCCTTGTCTCGCAAAGGCATCTATGTCATGGAGGGTGATGACACGCCTGTCACCGACTCAGATCTGACCTGCCAGCCAATTAAAATGAGTTCTCACATCCCCATGATTGATGCTTTGATGATGGCCTACACTGTGGAGATGATCAGCATTGAGAAGGTTGTGACCTGCGTGAAGCGTTTCTCCACATTCAGTGCCTCCAAGGAGCTTCCCTTTGACCTTGAGGATGCTATGGTCTTCTGGATCAACAAGGTGAACCTGAAAATGAGGGAGATCTCAGAGCGGGAACACAAATCAAAGCAGCATCTGCTGGAATCCCCAAGTCATCAGAAGTCTCCCTCAAAATGGTATTGGAAACTAGTACCTGTACGGTATCGGCGGGATCATGCCTCAGGTAGACAGCTGCCCCACTTCCCCCTGCTGGAGGATCTGATCAGGGATGTGTGTGACGGTGCTGCACTGCTGACCGTGGTCCATTACTACTGCCCAGACCTGATGAAGCTTGATGATATCTGCTTGAAAGAGGTGCCCTCAATAGCAGACAGCCTTTATAATATCCAGCTGCTGAAAGAGTTTGCCAATGAGTACCttaacaaaagcttttatttgacTCTAGAGGACATGTTGTACGCACCTCCTGTGCTGAAGcacAATGTCATGGTATTTATAGCAGAGCTCTTCTGGTGGTTTGAGATCGTCAAGCCTGAATTTGTCCAGCCGAGAGATGTTCAGGAATTTAAAGATGCAAGAGCTATGACTCAGCCCAAGAGTGCCAGGCCTACAGTGCCCATCTCCAACGCCACCAAACGGAGCTTCCTGGTGTCTCCTGGTGTGGCTGATCCAGCACTTCCTGTTCAGAACAGCCCGGATGTTTGTAACAGGTACTTCCTGCACCCTGAAGAATCTGAGCCTCTTAATAAGGGGAGTTCCAGCTTCAGCCCCTCTCACCCACTTCTGCCACTGAGACAAAGACAGAAGAAGGCTCAGCCAGGAGAGGAAAGCACTGTCTGTCGAAACCGTTCCAATTCTTTTACACAAGAAGGTCACTCCAGAGGATCAGTGGCTTGGTCAGATAAACGGCAGAGgcCACTGTCTCAGCTGAATCGGTATGTTCTCCACTCTGCTACGGACAGTGATGCAGATTTGGCCTCAGGCGACAGCGTTAGTCTGACTTGCTCTATCAGTGAGGACAGCCTGGCCTCCACAGTAACACCCAAGCACCAGAGCCATCCGGGTCAGGGCAACGTTAGGCGTGTCAATGGCCACAGTCTTCTTGGCAACGTTAACATGGATGAGGAGGATGAACTAGTAACTATTATCAAGCCagattcatccaaaaatgataCCACCCTGATAAACTCTGAGGATGCAGAGCGACAGAGTGCAACCCCTGGTGCTAAAACAGGCATTTGGGGAAGACCAGAGGAAGCATCCTTAGATTCTCGAACAGCCAGTTTCTTCCTGGAACCTCTGATGCCTGCAGTTCTCAGGCCAGCCAAAGAGAAGTCAATATGCCTAAATAAGGAAGAAGAGTCGGGAGAGGGAAGGCAGCGAGGAGCAGCACGGAGAGTAGCAGGAGCAGAAGGTTCTGTTTCATCTTCCAGACGGAGACCTCCTTCCACACTTAACCGGACCTTTACCCCCAACACTAGCTCAGAGTTTGAGACAACTTTTGAGCCTAAATCCAGTGAATTTGTGCCTCCAGCCCCTGGGCAGATGCAAGCTTTCAGACCATTAGCAACAAGTAGTGTTGAGCCATCTTCTGCTGAGCGGTCACCTGGGTTTTACCTTCATTCTTCTGTGCCTGAGGACAAGAGGCCTGTACAAGCATGGGACATCCAGCCAGGATCTGATATAGAGACTGTGGAGACCATTGAGGAACAGGACGCAGAGCTCACCAAAGAGCTCCATCCAGACAAGAAACGGCTCTATGAGGAGGACGAAGAGTCTGCAAAGTTGCGGGAAGACATGAATGTAAAGGAACATGAGGATAAGGATGGTGGCAGCAGGTGCTCAAGCCCAGGGCAGTCCCAGGTCAGCAGTGTAGCTAGCGGCAGCATCCGCATGACCAGTTTTGCTGAACGAAAGATGCAGAAGTTTGGTAGCAATCAAGATATCCGCTCCAGCACAAGCAGCTCACAGCGGACCACACCAGATGGCTCGGAGAGTTGCCCTCTTCCTCTGACTTCCTGGAGGATGAAAAGAGACCAGAGTCCCACACCACAGAACAAGGATAGTGCCAACATGCTGGCATCTGAACTTGTTCAACTCCACATGCAACTTGAAGAAAAACGGCGTGCAATTGAATCCCAAAAGAAGAAGATGGAGGTCTTGACAGCCAGACAAAGGCTTAAGCTTGGGAAAGCAGCCTTCCTGCACATAGTAAAGAAAGGGAAGAGTGATACTCTCCCTCAGCCTACAAAGTCTGAGTACTACTTGAAAGATGGCCAAAAACTTCatcaagagaaagagaaagagaaatcgTCGAAAGACGACACCTGTGTTGGTGCTCTGAGAGATGGGCCGAAAGAGGCAGAAGAGCCAGAGAAAGCGTCTCTCGAATGGGCAGGTGGGGGGACTGTTTCCTCTAGTGCCTTAGATATGGATGAGGAGATAGATCTCAATGAATGCAACCGCTCCATTGAATTGCTGAATGAGGCTATTGGAAACATTCAGCAGCAGATGATGCAACTCTCGCTCCAGCAGGAAATGCTCATGAAGCAAAATCTTCAGTCTCCAACAGGTGCTGCTCCACCATCTAGCAGTGACCAAAGTAATGCATCTGAACCCAGGGTCAGAGCTTCGATACATTTTGTTGAACCAAGTGGCAGCCCTGTGGTACGGAAGCCCCCCAAACTAAGTTCAGCACGGTCTCGCTCCAAACCGTCAGAGCTGTTACTAGTTAAGGAGCATGGCAAAGGACAAAAGAGCTCTACTCCTACACCTATTGACAGCCCCTCTGCTAAGTCTATTCAAGGGGGCAGGACCCCCAAACCAGAGTCTGAGGACTTTGTGCAGAACTCCTCAAGATCAGACTCCTTCAAAGACAAAGGGAACTCAAAAAGCACTACATTCCACCTTAATGATGAAGCTAACTTGAGGATGGTCTCAAGGGAACCAAGTTCTGTGGCCCTTGGTGTCACTTTTGAAGAAACCACTACCTTACAGGATGCTGAGGCTACATTTGATGAGAAAGCAATGGATATTGTCTCTTCAGAGGATATTTCTAGAGGAAAAGTCAATCTTATTGAGGTAGACTTGTCTGATTTGGCTACAAATCCAGATGAAGAAAATGCCAATGTACTGGATGTCACCACTGAGGGGAGCGATGGGGAAAAGAAGTCTGGAATGGGCTTCTTTTTCAAGGATGAGCAAAAAGCAGAGGATGAATTGGCCAAAAAGCGAGCAGCGTTTCTCCTAAAACAACAGAGGAAAGCAGAGGACGCTCGGCTCCGAAAGCAACAGCTAGATGCTGAAAGTGAGCTGAAAAGAGATGAAGCCAGGAGGAAAGCTGAAGAGGAAAGACTCagaaaagaggaggagaaggcCAGGAGAGAGTTGATAAAGCAGGAATATCTTAGAAGAAAACAGCAGGAGATGTGTGAGGAACAAGAGCAGCCCCAGCCCAAACCCAAGACCAAGCCTAAAAAACAAAGGCCGAAGTCTGTGCTAAAGGAAGAACCTTCAGTTGTTACACTTTCCAAATGTCCTTCTTCCAATGAGAATCTCATCAGTGCCCAGTCTGGCTCTAGTCTATCACTAGCCTCTGTGGCCACCACGGAACCAGACAGTGTCAACTCAGGGGGGGCGGGATCTTATCGAGGGGAATCAGTAGAGTCGTTTCCAGGCCTCAGTCGCAATTCCAGTCGGACTACAGAGAGAGACTGGGACAACGGTTCCACAGCGTCTTCCATTACATCAACATCTATGGCAGAATACACTGGACCCAAGCTTTTCAAAGAGCCAAGTGCGAAGTCCAACAAGCCTATAATCCACAATGCCATCTCTCATTGCTGCTTAGCGGGAAAAGTAAATGAACCGCAGAAGAACTCCATTCTTGAGGAGCTGGAGAAGTGCGAATCCAACCACTTGATGATTCTCTTCCGGGACAGTGGCTGTCAGTTCAGAGCCCTTTACTCCTACTTCCCCGACACAGAGGAGATCCACAAGCTCACCGGCACAGGGCCCAAGAGCATCACTAAGAAGATGATTGACAAACTCTACAAGTACAGCTCGGACCGCAAGCAGTTCACTGTAATCCCGGCCAAGACTGTGTCCGTTAGTGTAGATGCGCTGACTATCCATAACCACCTGTGGCAAGCCAAAAGACCCGCAGGGCCAAAAAAGAGCGGAAAGTGAAATCCGGCCCTCAAGATTAGCACTTTCGCAACAAGGCCCGTGTTCACTTATTTGCTTCCATCAGAGTTTGGATGGAAGAGGCTCGCTGGACAAACAAACAGGCATGAATCAACATGCACttcatttgaatgtgttttgggTTGAAGTAGTCCTTTACCCACAATCCTGTGGTCTTTTTACATGATAAATTTTTTGTTACTTGAAGTATTTATTAGTTTGGCACTGATTAGCTCGTTTAAACGAAGCACTCCCCCCTTcgtgattgtttttgtttgattaatttTCCTCTTTTGTGAGGGATACACGTTTTCCTCttaatgtctttaaaacatgtttccTGACTCTAAGGACTGCAAGAACTCGAattcatgtataaaaaaaattgctgactTGCCTCtcaacaaagctttttttttgcctccaaaacatgctgctcttttgttgTCACTGGGACAATCCCGGGTCCGCATACTTTTGGCCTTCATGCATTGTGGTACTATGTCTGTTTAttcagtgctttaaaaaaatcagctcGGCTGTAGCCCGTTTTTGGAAACTTGGTGGTCCTTTTTAATAGGGAATCAAACAGACTTTGATACGTGTCAAATgcagttttcttctgtttttctctgtagCGGCCTCTCCTCTGGACAGTCTGTACTAATGGTGCACTTATGATCatgttttagtaatattatCATGCAATGTAACCATGTTGATGTTGGCACTGGAGCTTTTTCTCATGCAAAAGAGCAGCATGCTCTGTTATGAAGAGTGTCGCTGTAAACGATTTGAATGacagtatttaatatattcataatcgGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55986 lncRNA upstream 77766 19759711 ~ 19760204 (+) True G37951
TU55830 lncRNA upstream 190895 19594070 ~ 19647075 (+) True G37843
TU55663 lncRNA upstream 549642 19288016 ~ 19288328 (+) True G37734
TU55492 lncRNA upstream 910968 18925437 ~ 18927002 (+) True G37620
TU55491 lncRNA upstream 912537 18925210 ~ 18925433 (+) True G37619
TU55996 lncRNA downstream 13082 19873242 ~ 19874144 (+) True G37958
TU56081 lncRNA downstream 128124 19988284 ~ 19998252 (+) False col27a1b
TU56191 lncRNA downstream 267241 20127401 ~ 20392624 (+) True G38082
TU56205 lncRNA downstream 310814 20170974 ~ 20552306 (+) False G38091
TU56207 lncRNA downstream 310814 20170974 ~ 20552306 (+) False G38091
XM_043238787.1 mRNA upstream 5116 19794796 ~ 19832854 (+) True notch1b
XM_043240188.1 mRNA upstream 78689 19744545 ~ 19759281 (+) True adamtsl2
XM_043238682.1 mRNA upstream 104498 19726820 ~ 19733472 (+) True LOC122344990
XM_043240791.1 mRNA upstream 127900 19707288 ~ 19710070 (+) True nrarpb
XM_043239271.1 mRNA upstream 173298 19661659 ~ 19664672 (+) False mboat4
XM_043240663.1 mRNA downstream 791 19860951 ~ 19864951 (+) False LOC122346028
XM_043240664.1 mRNA downstream 796 19860956 ~ 19864951 (+) False LOC122346028
XM_043240662.1 mRNA downstream 800 19860960 ~ 19864951 (+) True LOC122346028
XM_043240450.1 mRNA downstream 94295 19954455 ~ 19960667 (+) True LOC122345916
XM_043238756.1 mRNA downstream 107417 19967577 ~ 20035380 (+) True col27a1b
TU55947 other upstream 128044 19707338 ~ 19709926 (+) False nrarpb
unassigned_transcript_958 other upstream 419801 19418098 ~ 19418169 (+) True trnap-ugg_3
XR_006251073.1 other upstream 838691 18962322 ~ 18999279 (+) False msh3
TU55500 other upstream 897075 18938813 ~ 18940895 (+) True G37626
TU56198 other downstream 283123 20143283 ~ 20151585 (+) False lix1
TU56199 other downstream 288261 20148421 ~ 20151585 (+) False lix1
TU56217 other downstream 324875 20185035 ~ 20513916 (+) True G38092
TU56241 other downstream 424463 20284623 ~ 20287317 (+) False LOC122345823
TU56242 other downstream 424463 20284623 ~ 20287277 (+) False LOC122345823