RNA id: XM_043240906.1


Basic Information

Item Value
RNA id XM_043240906.1
length 1814
RNA type mRNA
GC content 0.55
exon number 12
gene id LOC122346201
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5851966 ~ 5857677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGGCTCTGCCGACGCTCTCGTCTCGCTGGCCGGGTCGAGAGCGGGACCTGGTGCGGCAGCGGGAGCAGGAGGCTCGCTGGAGGCAGCAGTGGGAGCTGAACTCCCGGTACTTCAGAGAGCAGGAGGTCCGCAGCAGCAAGCAGGCGCAGTGGAGCTCACGCCAGTCCTTCCAGCGCAGTATGTCGGCATTTCAGCGGGAGCGAATGAAGGAGGAGAAGCAGCGGAGACTGCAGGAGCGCAGGGAGCGTCTGAGGACGATGCTCCAGGAAGAGAGAGACCAGTTGGAGGCCGAGCTCAGAAACGTTCGTCCAGACAGAGACACGCTGACCAGACAGCTGGTGGAGAAAACGGATGCCCTCCGGTCTGccagagaagagaggaggaaaaatcTTGCACAGGAGCTGCTAAAGGAACACTGGAAGCAGAACAACCCAGAACTGAGGAAGGTGGAGACAGAGCTGCACAAAGATCACGTTGTGAGCCGGTGGCAGGTTCAACAGCAGGAGAAAAACGGGCTGATGAGAAAACTCAGGAGGAGAAACTGCGTTTTGAGAATGAGTATGAGAGGACGAGACGAGAGGCTCTGgagagaatgaaagaagaagaggagaagagaagacAAGAGGAAAGGAAGCGAGCCGAAGACCTCCGTAAACAGATGGAGGAGCTCAGTCTACGAGAACAGGAAgCTGAGCGCCTTAAGCAGGAACAGGAAGCTCTAATGTCTCAACGCTGGGAGCTTGAGAAGCTAGAGGATGAGAGGAAGAGGATGGAGGAAAGCAGGAGGAAAACTGAATTTGGGCATTTCTTGACTCGTCAGTACCGTGCTCAGCTGAAAAGGAGAGCACAGCAGGTGCAGGAGGAACTGGAGGCAGACGGCAAGATCCTGGCCGCGCTGCTGGAGGGAGAAGTGGAGGAGCAGAGACTGGAGAAAGCCAGGAGACAGAGAGCCGTCGCCGACGCCGCCTGGATGAAGAGAGTCATCGAGGAGCAGCTCCAGCTGGAGAGGGAGCGGGAGGCAgagtttgatattttgtatcGGGAGGAAGCTCAGCGTGTTTGGGAGAAGAGAGAGGCGGAGTGGGAGAAGGAGAGGAGAGCCAGAGAGAGACTCATGCGGGAGGTCCTGACAGGACGTCAGCAGCAGCTGGAGGAACGAATGAAGGAGAACAGACTGGCCAGGGAGGAGTCTCTGCAGAGGAGAGAAGAGCTGATCCAGCAGCTGGAGCGAGAGAGACTCACCCGACGGCAGGAGAGGGATCAGCAGGAAGGAGCCCGCTCCGCTCGCATGCTGGAGATCAACGCACAGGTGGAGCAGAGGCGCAGGGAACAGTGGGAGGAGCTGCAGAGACAAGAGCAAGAAGAACTACGAGAGAGGGAGGAGCTTAGGCAGCAGGAGGAGGAGCTTCATCTTGAGACAGAGAGAATGGTTCGGCAGGGCTACAAGGAGAGAATTCACAGCAGACCCCGGTCAGCATGGACATGAGAGCACTTCACAGGAAGAGTGTTTGTGCCACATCCCCTTTAGGATGCTAGGAGTGTTTTCTAGCACCGTTTCTCAGTCACAATCGGGGAAGTCTGTGTTGGCCAATTTGTGCTTAAATGAGGTCCGGGTTCCCCCtcacaaaatgctttttatatataaaatcatttacagTATGGCTTCCGTAAATACTTGTTTAGGTAAGTTCGCAGTTTTACATTTGCTCTGCGCCTGTGCTGAGCATGTACGCCTGTTTTTATACGTCGATCGTTTTGTATAGATGAATTTCGATGCTGACAAGGTTTTCAATAAAGGAAATGTTACCCGTT

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16811 TCHP; trichoplein keratin filament-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49099 lncRNA upstream 312568 5526849 ~ 5539398 (+) False G33348
TU49093 lncRNA upstream 312637 5469072 ~ 5539329 (+) True G33348
XR_006251080.1 lncRNA upstream 383935 5456097 ~ 5468031 (+) True LOC122346031
TU48915 lncRNA upstream 449182 5401315 ~ 5402784 (+) True G33206
TU48972 lncRNA upstream 481445 5368434 ~ 5370521 (+) True G33257
TU49269 lncRNA downstream 1613 5859290 ~ 5860897 (+) True G33453
TU49270 lncRNA downstream 1613 5859290 ~ 5880529 (+) False G33453
TU49303 lncRNA downstream 5655 5863332 ~ 5897366 (+) True G33471
TU49349 lncRNA downstream 221406 6079083 ~ 6079423 (+) True G33492
TU49363 lncRNA downstream 267653 6125330 ~ 6165323 (+) True G33499
XM_043239993.1 mRNA upstream 47012 5748118 ~ 5804954 (+) True fam222a
XM_043239994.1 mRNA upstream 47012 5748118 ~ 5804954 (+) False fam222a
XM_043239995.1 mRNA upstream 47012 5748118 ~ 5804954 (+) False fam222a
XM_043240291.1 mRNA upstream 172935 5671285 ~ 5679031 (+) True mvk
XM_043239841.1 mRNA upstream 185139 5653575 ~ 5666827 (+) False ube3b
XM_043240905.1 mRNA downstream 27244 5884921 ~ 5894400 (+) True ankrd13a
XM_043240135.1 mRNA downstream 62897 5920574 ~ 5954193 (+) True sgsm1a
XM_043240139.1 mRNA downstream 62897 5920574 ~ 5954193 (+) False sgsm1a
XM_043240138.1 mRNA downstream 62897 5920574 ~ 5954193 (+) False sgsm1a
XM_043240136.1 mRNA downstream 62898 5920575 ~ 5954193 (+) False sgsm1a
TU49128 other upstream 202081 5604333 ~ 5649885 (+) False G33355
TU49131 other upstream 202081 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other upstream 204541 5625267 ~ 5647425 (+) False myo1ha
TU48849 other upstream 1228906 4622507 ~ 4623060 (+) True G33174
TU48610 other upstream 1707570 3605186 ~ 4144396 (+) False G33015
XR_006251052.1 other downstream 102158 5959835 ~ 5978584 (+) False tnpo1
TU49351 other downstream 229585 6087262 ~ 6088562 (+) True G33494
XR_006250986.1 other downstream 390118 6247795 ~ 6254646 (+) False hexb
TU49600 other downstream 615670 6473347 ~ 6474191 (+) True G33664
XR_006251060.1 other downstream 935688 6793365 ~ 6824304 (+) False si:dkey-34e4.1

Expression Profile