RNA id: XM_043240908.1


Basic Information

Item Value
RNA id XM_043240908.1
length 1609
RNA type mRNA
GC content 0.53
exon number 4
gene id zgc:55461
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7062979 ~ 7065087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATCCACCTGTGTTCCAAGGCTGGCGTTATTTAAAACTGGAAGCCGTTTCTGcgctctgcagagtttagtcGATCCGAGGTGGCAGAAAGTtcaacacatttgtttttgaacaaaaaagtgcttgtttttcacaatatttcaatATGAGGGAAATTGTTCACCTGCAAGCCGGTCAATGCGGAAACCAAATCGGTGCCAAATTTTGGGAGGTGATTAGTGATGAGCACGGAATTGACCCCACGGGAACTTACCATGGAGACAGTGATCTGCAGTTGGAGCGGATTAATGTGTACTACAACGAAGCCACTGGTGGGAAGTATGTACCCCGTGCTGTCCTTGTGGACCTGGAGCCTGGAACCATGGATTCAGTGAGATCTGGACCGTTTGGGCAGGTCTTCCGACCAGATAACTTTGTCTTCGGTCAGAGTGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACAGAAGGTGCTGAGCTTGTAGACTCGGTTCTCGATGTGGTCCGTAAGGAAGCGGAGAGCTGCGACTGTCTGCAAGGCTTCCAGCTCACGCACTCCCTTGGAGGCGGCACGGGGTCAGGCATGGGCACGCTCCTCATCAGCAAAATCCGTGAGGAGTATCCAGACCGCATCATGAACACCTTCAGCGTGGTGCCTTCACCCAAAGTCTCAGACACCGTTGTGGAGCCCTACAACGCCACGCTGTCCGTCCATCAACTGGTGGAGAACACTGATGAAACGTACTGCATCGACAACGAGGCGCTGTATGACATTTGCTTCCGTACACTCAAACTCACTACGCCCACCTACGGTGATCTCAACCACCTCGTGTCTGCCACAATGAGCGGGGTCACCACCTGTCTCCGCTTCCCCGGTCAGCTTAACGCCGATCTGCGCAAACTGGCCGTCAACATGGTGCCTTTCCCGCGTCTGCACTTTTTTATGCCAGGCTTCGCCCCCCTCACCAGCAGGGGGAGCCAGCAGTACCGGGCTCTTACGGTGCCCGAGCTCACCCAGCAGATGTTTGACGCAAAGAACATGATGGCCGCTTGCGACCCCCGCCATGGCCGCTATCTCACCGTCGCCGCTGTGTTCCGAGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGAATGTGCAGAACAAGAACAGCAGCTATTTCGTGGAGTGGATCCCCAACAACGTCAAGACCGCTGTGTGCGACATCCCGCCTCGAGGTCTCAAAATGGCAGCCACTTTTATCGGCAACAGCACCGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACTGCCATGTTCAGGCGCAAGGCCTTCTTGCATTGGTACACGGGTGAGGGGATGGATGAGATGGAGTTCACGGAGGCCGAGAGCAACATGAATGACTTGGTGTCGGAGTATCAGCAGTACCAAGATGCCACCGCGGAAGAGGAAGGAGAATTCGAGgaagagggagaggaggagctagCGTAAAGAGTTGAATgctgaagttttttttcccgtttctttgtttgttttgtctctttgttctgttctttctttCACAAGCAGCTAAAAGCTAGCAATGtgaacaaatgtttattaaagctCTAAATTTGA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49702 lncRNA upstream 80986 6980717 ~ 6981993 (+) False kank1b
TU49676 lncRNA upstream 132194 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 141340 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 366337 6617276 ~ 6696642 (+) False dab2ipb
TU49607 lncRNA upstream 568449 6491552 ~ 6494530 (+) False G33665
TU49863 lncRNA downstream 69207 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 69820 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 79973 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 81948 7147035 ~ 7147616 (+) True G33853
TU49878 lncRNA downstream 101521 7166608 ~ 7168142 (+) True G33857
XM_043240926.1 mRNA upstream 3553 7052970 ~ 7059426 (+) True glipr2
XM_043240928.1 mRNA upstream 3553 7052970 ~ 7059426 (+) False glipr2
XM_043240930.1 mRNA upstream 3553 7052971 ~ 7059426 (+) False glipr2
XM_043240929.1 mRNA upstream 3553 7052973 ~ 7059426 (+) False glipr2
XM_043238228.1 mRNA upstream 63591 6992222 ~ 6999388 (+) False LOC122344685
XM_043238991.1 mRNA downstream 54254 7119341 ~ 7120962 (+) True pole3
XM_043238985.1 mRNA downstream 58973 7124060 ~ 7133933 (+) False lrsam1
XM_043238987.1 mRNA downstream 59004 7124091 ~ 7133933 (+) False lrsam1
XM_043238984.1 mRNA downstream 59033 7124120 ~ 7133933 (+) True lrsam1
XM_043238988.1 mRNA downstream 59033 7124120 ~ 7133933 (+) False lrsam1
TU49701 other upstream 80986 6978548 ~ 6981993 (+) False kank1b
XR_006251122.1 other upstream 111250 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 111613 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 112221 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 112698 6950211 ~ 6950281 (+) True LOC122346219
XR_006251030.1 other downstream 221503 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 273381 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 273381 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 308819 7373906 ~ 7449497 (+) False LOC122345182
TU49933 other downstream 355053 7420140 ~ 7440775 (+) False G33891

Expression Profile