RNA id: unassigned_transcript_958


Basic Information

Item Value
RNA id unassigned_transcript_958
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnap-ugg_3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19418098 ~ 19418169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTCGTttgtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcctgGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55663 lncRNA upstream 129770 19288016 ~ 19288328 (+) True G37734
TU55492 lncRNA upstream 491096 18925437 ~ 18927002 (+) True G37620
TU55491 lncRNA upstream 492665 18925210 ~ 18925433 (+) True G37619
TU55490 lncRNA upstream 493422 18923302 ~ 18924676 (+) True G37618
TU55385 lncRNA upstream 668043 18678596 ~ 18750055 (+) True G37540
TU55830 lncRNA downstream 175901 19594070 ~ 19647075 (+) True G37843
TU55986 lncRNA downstream 341542 19759711 ~ 19760204 (+) True G37951
TU55992 lncRNA downstream 376274 19794443 ~ 19867398 (+) True G37956
TU55996 lncRNA downstream 455073 19873242 ~ 19874144 (+) True G37958
TU56081 lncRNA downstream 570115 19988284 ~ 19998252 (+) False col27a1b
XM_043239115.1 mRNA upstream 123137 19289551 ~ 19294961 (+) True slc14a2
XM_043239116.1 mRNA upstream 123137 19289597 ~ 19294961 (+) False slc14a2
XM_043238712.1 mRNA upstream 141949 19224925 ~ 19276149 (+) True setbp1
XM_043238713.1 mRNA upstream 141949 19224925 ~ 19276149 (+) False setbp1
XM_043238714.1 mRNA upstream 141949 19253140 ~ 19276149 (+) False setbp1
XM_043239637.1 mRNA downstream 30089 19448258 ~ 19457740 (+) False ptar1
XM_043239636.1 mRNA downstream 30225 19448394 ~ 19457740 (+) True ptar1
XM_043240561.1 mRNA downstream 40189 19458358 ~ 19506727 (+) False apba1a
XM_043240560.1 mRNA downstream 43504 19461673 ~ 19506727 (+) True apba1a
XM_043240562.1 mRNA downstream 43504 19461673 ~ 19506727 (+) False apba1a
XR_006251073.1 other upstream 418819 18962322 ~ 18999279 (+) False msh3
TU55500 other upstream 477203 18938813 ~ 18940895 (+) True G37626
TU55503 other upstream 477203 18938813 ~ 18940895 (+) False G37626
XR_006250965.1 other upstream 570424 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other upstream 570433 18842819 ~ 18847665 (+) False arsk
TU55947 other downstream 289169 19707338 ~ 19709926 (+) False nrarpb
TU56198 other downstream 725114 20143283 ~ 20151585 (+) False lix1
TU56199 other downstream 730252 20148421 ~ 20151585 (+) False lix1
TU56217 other downstream 766866 20185035 ~ 20513916 (+) True G38092
TU56241 other downstream 866454 20284623 ~ 20287317 (+) False LOC122345823