RNA id: TU67008


Basic Information

Item Value
RNA id TU67008
length 877
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G45271
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14214638 ~ 14216276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gGAATGCTGAACAGCAGAGAATCTTATGGAAGATTCCAGATATTTCTCAGAAGTCTGAGAATGGAGGTGTGGGATCTCTGCTGGCCCGTTTCCAGCTGACGGAGGGTCCCAGTAAACCGGCTCCGGTGGCCGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCAGGCTGTGACATTGAGCTGGCTGGCCTCGGGTATCGATTTTCCCTCATCAAAAAGAGGTTTGCAGCAGGAAAATACATGGCGGACAACTAAACGACCTGACGCCAGTCTGCATATTTTGGACCAATTCTGAGTATTTAAAACACAGGACATGACCCCTACCTGACCTTATGGATAAACCTTTGTAGATGTACAATACAGGtggacctcacacacacacacactccagcagtATTATATGAGTTGCATTATAAAATGTGGACCGTTTTAGGGTGTACTTCTTATATTTGTGAACCGTACTCACTTTGCAACATCTGTATTGCGGCCTGGGTTTGTTCGTAAGGTTTAGCCTCTATTTCTGTCCGCCGTGTTATTGGCTGTGCCTACCTGAACCTGAAATCTCTGTATCCTTCTCTCGGAGGCGATActgatgtgatgtttttattactcTATGCATTCAGTTTGTCAAAAGTATCACATTTTCGAGCAAGGTAGCAAATTAGTACGGTCAAAAAGAGGAAATGAGCCTCCGCCACAAGATGGCGCTATACTGTTGCATGTAGTATGAGGTCTGCATCAGATTTTGGTGTTGCTcaagcttattttaaaaaaaaaaaaaaagcgtattCAGGAATATCTCCTTTTAATTCACACAGCGCAGTCAGGTGCGTTAATTGGACAAGGATGCAAATTTTGTCGAATCCGTTTTTAGACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67006 lncRNA downstream 1652 14211366 ~ 14212986 (-) True G45270
TU66938 lncRNA downstream 232753 13981229 ~ 13981885 (-) True G45225
TU66908 lncRNA downstream 242544 13911684 ~ 13972094 (-) False G45206
TU66907 lncRNA downstream 242544 13953479 ~ 13972094 (-) False G45206
TU66905 lncRNA downstream 242544 13968313 ~ 13972094 (-) True G45206
XR_006251154.1 lncRNA upstream 47513 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA upstream 47513 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA upstream 47591 14263867 ~ 14279026 (-) False LOC122346673
TU67012 lncRNA upstream 47591 14263867 ~ 14279026 (-) False LOC122346673
TU67013 lncRNA upstream 47591 14263867 ~ 14279026 (-) False LOC122346673
XM_043242907.1 mRNA downstream 13895 14197692 ~ 14200743 (-) True ttc4
XM_043242836.1 mRNA downstream 24309 14179872 ~ 14190329 (-) True lurap1
XM_043241204.1 mRNA downstream 86321 14126574 ~ 14128317 (-) True cldn33b
XM_043242271.1 mRNA downstream 174475 13986047 ~ 14040163 (-) True lrrc7
XM_043241827.1 mRNA downstream 428738 13722309 ~ 13785900 (-) False pex5la
XM_043241459.1 mRNA upstream 69221 14285497 ~ 14402960 (-) True pde4ba
XM_043241460.1 mRNA upstream 69221 14285497 ~ 14363385 (-) False pde4ba
XM_043241461.1 mRNA upstream 69221 14285497 ~ 14335649 (-) False pde4ba
XM_043241462.1 mRNA upstream 69221 14285497 ~ 14328201 (-) False pde4ba
XM_043241464.1 mRNA upstream 69221 14285497 ~ 14292171 (-) False pde4ba
TU66983 other downstream 21472 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 533364 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 746699 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 747073 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 747412 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 1112691 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1387634 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1842692 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1843617 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 2144924 16361200 ~ 16364020 (-) False fam183a

Expression Profile