RNA id: TU67422



Basic Information


Item Value
RNA id TU67422
length 1217
lncRNA type inter_gene
GC content 0.42
exon number 6
gene id G45544
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15233267 ~ 15745536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


attttttcattgcTATAGATATATTTAACTGGTAATTTGGACAAAGAAGAAGTGCCCAATTCCCAGCTAACAAACTGTGTGTGAACAAATTTATCAGTTCATCTCTAGCAAGCGGAAAAGGTGGAGCAAAGAAAGCCCTTTAATTGTTCTTTTGGATATTTCACTGTTATTATGTCTGTCTAGCGTGCTTGTTCTCTAGAAAAAGACCCAGCGGTAAAGAATAACATGGGACCTCTGTCAGCTTCTGGTTACTTAGtgcttttttcCTCCCTGTTGACACACGGAACATTTCAGGGCACGGATCGGAATGAATCAGTCAAAGATTCTCACTCAGACGCTGCTCTAGAGGTCCGGCCTGACAGCAGACAACACTTCAGGGGGGGAAATTTCACCCTTCGCTGCTCTGTTAAAGTTATTAATTCAACGAGCTGGATTCTGAGCGGGCCGGGGAGCTAAAAAGATCTGGATGCTTGCAGTTAAATGGCACCGAATCTACAGACAGGCCTCAAGAATGTCATTTCATTGACATTGACCATAATAACAATGGATTGTACTGGTGTGAGAGTCCtgctgaaaacaagacaagtAACTCCATCAGTATCACCGTGAGCTATCGCTCAAAAGAcgaaaacacatttacagGGACTGTGGCCTGGGTGTCAGGGCTGTGTATCATATTGATTCTTCTGGTGCTTCTTCCTATTCTCTGGCTCTTGTTTCCTGGTTTCAGGGAGAAATTGCATGTGTGTCCAAATAGGGCATTCAAGAGGGAAAGAGTTCAAGAGGAAATGCCTAAAACCAAGCAGGACGTGACTGAAATCCAGTGGGATCTTCCCTGGATGGAGATGGACAATTTGTTGGACGCGCACCAAAATCGTGGCAGCTGAAGTGTCTACATTTCAAATGTGGATGCTATCAGATACACATGCTATTTCTGAAGAGAAAACAGACACTGTGCTTTAAAGTGAGTCACAGGTAATATGACGGATGAATAAAGAGGCCCATCTTGATATTTACAGCTTATGGAAGTGTTTTCACACTGAATAATATGTTACCAACTTTAGATAAGAGGTCAAAGGTCCGTAAGGAATAATTATACCTTTTAATCACAAAATGGCACTGAATTGTTATTTCTGTGTGACTCATTTGCATATAGAGTAAAAGCTTGCAtgaacttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67490 lncRNA downstream 59277 15535386 ~ 15657179 (-) False LOC122346545
TU67511 lncRNA downstream 71060 15644069 ~ 15645396 (-) True G45602
XR_006251219.1 lncRNA downstream 124260 15591067 ~ 15592196 (-) True LOC122347411
XR_006251215.1 lncRNA downstream 128234 15587506 ~ 15588222 (-) True LOC122347378
XR_006251193.1 lncRNA downstream 135401 15580584 ~ 15581055 (-) True LOC122347074
TU67565 lncRNA upstream 11890 15757426 ~ 15760573 (-) False LOC122347279
XR_006251199.1 lncRNA upstream 97595 15843131 ~ 15877467 (-) True LOC122347156
TU67665 lncRNA upstream 156680 15902216 ~ 15946255 (-) False G45709
TU67663 lncRNA upstream 195722 15941258 ~ 16118586 (-) False G45709
TU67664 lncRNA upstream 195722 15941258 ~ 16118586 (-) True G45709
XM_043242474.1 mRNA downstream 20922 15691262 ~ 15695534 (-) True LOC122347277
XM_043241258.1 mRNA downstream 30971 15656736 ~ 15685485 (-) True LOC122346545
XM_043241327.1 mRNA downstream 113008 15601432 ~ 15603448 (-) True LOC122346598
XM_043241018.1 mRNA downstream 115610 15594363 ~ 15600846 (-) True LOC122346414
XM_043242507.1 mRNA downstream 225777 15489161 ~ 15490679 (-) False insl5a
XM_043242475.1 mRNA upstream 10773 15756309 ~ 15765107 (-) True LOC122347279
XM_043241361.1 mRNA upstream 406610 16152146 ~ 16253840 (-) True mast2
XM_043241360.1 mRNA upstream 509105 16254641 ~ 16256080 (-) True tmem69
XM_043242669.1 mRNA upstream 526481 16272017 ~ 16277301 (-) False LOC122347419
XM_043242670.1 mRNA upstream 526481 16272017 ~ 16277300 (-) False LOC122347419
TU67521 other downstream 110986 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 385639 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 1523290 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 2035182 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 2248517 13467868 ~ 13467939 (-) True trnaa-cgc_55
TU67688 other upstream 313432 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 314357 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 615664 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 1071104 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 1441153 17186689 ~ 17187318 (-) True G45895

Expression Profile