RNA id: XR_006251151.1


Basic Information

Item Value
RNA id XR_006251151.1
length 4934
RNA type transcript
GC content 0.46
exon number 18
gene id brdt
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11055035 ~ 11069466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAGTTTGCGTTCGCCTCCTTTCAGCATTGCTCGGTGCTCTATCATATCATAGTTCCCTTTGTGAGATTTTTCAAGCTGCAGGGATGACCGATGTCCAACACTCGCCAGAAGCTGACAACCAAAGCCACCGGGAAAAGAGCCACaatgtaatcatttaacagACACTAAAGAGGGAAATCGAGCTATAACGATCGACAGAACGTTCTAGAATGGTCATGTGATGTCCGGAGACCAGTTATGtcgcacttttaaaaaaatactctgaCGTACGTGTCTGTTTCTTGCTGGAGTTCGTTTGCCGTcgtaaaaaataaacaggttTAATTGTAAAACATCGTTGCGGAGTTGTGTATGGTATGAAATAGAAGGCGGCTTTGATGCGATacgttttaaaggaatattttcaCGGCGTTAAAGCAGCGAGGGGGAAGAAGGGAGCACGTGAGGGGTCTTGTCCAATGGGATTGGGCGCTTTCAGCAGAAGGGTATAAATACCAGACGGTTGCCGTGAGAGACGTCCGCCATTGATGACTAACCTTTCAAAGAAACAGTGTAATTTCAAACGTATTCATGTATATGATGTTAATTTGTTCTGTTGGCGTTGAAAACTAAGGTCAAAAATCTTTTAAGTCGTTTTCAAAGAGGGTTTTTCGGGCGCAAAGCATCAACGAGATCCTTCGGTTGGTGAAGTTTTCCAGCAGAGCTCATCCTGCACTGCATCGTCTGTCTCAGTTCGGCAGTTTAAACTTTCTTTGTTGTTCCCGAGACGGAAAGTGGCACAGACAGTGGATGTGTAATGCTCACTGAGCTGCCTAGTCGTAGTTGCAAAAGCCCTTTCCATACTGGTCACCACTTCCTGGAGCGTCTCAGACCATGTCTGATGTGAAACCCCCACCGAACTTCACCATGAATGGGAACCCCCCTTCCCCTGAGTTCAAGAACCCCAAAAGGCCCGGGCGCCTCACCAATCAGTTGCAGTATCTAGAGAAAGTGGTGATTAAGTCCCTATGGAGACATCAATTCTCCTGGCCTTTCAGACAGCCTGTGGATGCGGTCCGGCTCAATTTGCCTgATTATTATTCAATCATCAAGAACCCTATGGATTTGAGCACGATTAAAAAGCGTCTTGAAAACAATTACTACTGGAAGGCAATGGAGTGTATAGAAGACTTCAACACCATGTTCACAAATTGTTACGTGTACAATCGGtCGGGAGATGACATTGTTCTGATGGCTCAAGCTCTTGAGAAGCTTTTTTTGGAGAAGGTGGCGAAGATTCCTCAAGATGAGTTTGAAATCTCTGCTCTGACAACTAAAGCTCCTGTGAAAGGAGGAAGGAAGTCAACAGCAGTGTTAAAGAGGCCACAGTCTCCTGTGTCTGAAGTGGTCTTTCAACAAACCGTGACTGTCATCCCTCCGGATGCTCTCCACTCCATTCCCTCTGCTCCCCTGTCTGCACAACTCACAGCCAAAttgaaaaatggtgtgaaaagaaaagcagaCACTACGACCCCTTCTGCCTCTTCCATCACCAGCTGTGAGTCGTCCCCTTGTGTAACAGAACCAAAAGTCCTTAAGTTATTCTCCAGGCGAGGCAGCGGCCGACCCATCAAACCTCCCTGCAAAGACCTTCCTGAATCACCACCACAGCATCAGGTGGGCAGAAGGACCAAACTCTCAGAGAGACTCAAATACTGCAATGCCATCCTGAAAGAGATGTTTGCCAAAAAGCATTCTGCTTACGCTTGGCCCTTTTATAAACCTGTGGATGCTAAGGCACTGGGCCTCCTTGATTATCATGAAATCATTCACCAACCTATGGATATGAGTACCATCAAAaAAAAGATGGAAGGCCGCGAGTACACCGATGCATTGCAATTCGCTGCAGATGTGCGATTAATGTTCTCAAACTGCTACAAATATAATCCACCCGGCCATGAGGTAGTTGCCATGGCAAGAAAACTTCAGgatGTTTTTGAGTTTCGCTTCACAAAGATTCCTGATGAGCCGAGGAATTCAGCACCATCATCTAGTCAGAACAGAGTAAGGAAGGAGAGGGCGCACAGTCCGTCCAGCTCTGAGAGCAGTGACAGCGAATCATCGTCGCCCTCAGAAAACTCCTCTGACACggaagatgaagaggagagAGCGCAGAGGcttgccagcctggaggaacaGCTGAAAGCAGTGCGAGAGCAGCTGCAGTTGCTGACCCAAACTCCTCTCTTGAAaccaaagaaaaaggaaaagtccaagaagaagaggaagaaagaaagagagtccAGTAAGCGAAAAGGTGACGAAATGAAGAAACCAGCAAAAATACAGAAGAGGTCTAACAGCAAGTCATCAGGGCGGAAAGAGAGTAGAGCTTATGACTCAGAAGAAGAGATGAATACATTACCCATGTCTTACGAGGAGAAACGGCAGCTGAGTTTGGACATTAACAAGCTTCCCGGAGACAAGCTTGGCAAAGTTGTGAACATCATCAAGGCGCGAGAACCCTTGCTTAGGGACACGGACCCTGAAGAGATCGAGATCGACTTTGAGACTCTCAAACCTTCAACTCTTCGAGCTCTTGAGTGTTATGTTGTCGCTTGCCTCCGAAAGAAACCGAAAGAATCTGACAaaAAGAAGCTCCAAAAGAAGTCTAAAATCAAGGAAGCGGACAAAGAGCTGCAACACACAAACGGAGAATCGAATGTTAAAAATGCCAAAATTGAAGCTGAAGGGGAGAGTAAAGAGCTGAGCCGTCCGTCTCGTCTGagtgacagcagcagcagctcggCCAGCTCTGACAGCAGTAGTAGTGACTCTAGCTCCTCTGATAGCTGTGACTCTGATTCAGAACAGAAAGCTAAGAGGAAGCAAAGCAAAGCCCCTGGCAATGgccacaaaattaaaaacaagGCATCGCGGCAGGCCCTTGCTGAGGTAAAGGACTGTTCTTCTTCCTCAGTCGTGACGTGCCAGTCTCGTCCAGCGTCGTTAGTCTCGGAGGCAGACTCCAAAGACCTGTTTGCGTCACAACAAGCAAAGCATCCTGCCGAGGACGTCATCATGGCGATCCCAGCGTTACACAGCCGGCTGCCTCCTCAGCCGTCCAGACctagtggaaaagctgccccaCTACCTCGTAAAACCTGGCCTGCCCCTTTACCGCTCAACCTACCTCCAGACCAGGACATCGACCCTTTATGTAACACTTCCGCCACCTCCCCCTGTAAAGATGACACAACCACGCCACTCAAATCCTCCCACGTGTCCGTCCCCCCGCACACACCAACCTCACTCCTTTCAGACCCGTCATTCCCCCACAGTCCCTCACTCGACCCACAGGTCTCTCAGGTCGGCCCCCCGTCGCCTGCTGCTGCAGCGGAGCCTCCACTTAAATCTGAGCAGGAAGGTGTTCCTCCTCTTCTGTCACCTCTGACCTCACCTCCCGCGGCCGTGCCTGTCACAGGATGCCAGCCTACCTCCAGCTCTCAGTTTGAGTCTGACGCAGCAGCTTCAAAAAACCAAGCCGGACTGCCCGCCTTCAAAGCCAGAAGTGGAGTCGGCAGAGCTGCCTCTGATGGCAGCCATCTTGGATACCCCCAAACCTCCTGAGCCATCGTCTCTCCCACAGAGCGCTGTTGACCGAGAACGAGAGATGGCCCGCAAGAGAGAGCAGGAGCGCCGCAGGAGAGAGGCTATGTCCGGAGTCATTGATATGACCATGCAGAGTGACATAATGGCAACCTTTGAGAAGAACTTGGACTGAgatcaacaaacaaacaaagaaaagaaaaatagcttGTGTGTATTGCGCTACTGTTCGGTGAACAGTGTAGGCCGTTTTTCTCCCTTCCCTTATACTTGCTCCATGAGTCCTGGTGACTGAAACGGGTCTTTAGTCTTTCAACGGGCAAAAATACTGCAATACAGCTGCATCACTTTACATTTGTACTAAGTTAGctgttgtaaaaaaagaaaaaaaaaaaagtcgtgGACAGCATATGATGTTGTAAGACCAATATTTGCACCAATAATAGTGTTGAGTGTATAtcaagtttttgttgttttgatacGTTTGATGCTTGGATTGAGAAATGCCTGCTGCACTGAAATGCTGCCGATTGTCTGTGGCAGTTCAGAAAGAGATGTACATGTATGTCGTTTCACAAGGTTTTGTGTTCCTTaacgttttggtttttttttaatactgaagAATGTTTACTTCtattgattattattgtaatCGAGTTTTTTGACACATTCCATCGACTCTTCTGCTGTATGAATATTGCATAGCTGGTCGTCTTGCGCTAGCTGTTGTCAGAACCGTAAGGGATATTCCTGTGCAGGGCCCAAACCCTGTTTATCTTACTAGCTGGTATTTCATGTATTTGACGTAAAGCAGCAATTTAAACAGAACATAGGCTGGCTGCATTACACTCGTcctgtttaatttatatatctctatatattaaaaaaatatttctgtagtGTCAGAAATGTAACCTAAGCATGCgtgtataaatatttagcattttgatacaggacagcctttttttttttttttttttttctcccaaatgTCTGTCTAGGAGTTCTCGCACTTCCTGTATTTCTATTTGTATCCATTTGGAAGTGCAGTGCCATAAAGTTTCTCTCTTGGAGATGATAGGCAGTTCTCTGTGCCTAAAGTCTGTGGGATCTCCAGAGCCGTGTTGATTCCTAGGTGTGATCTGGTGATTGTACTGCACTgaagatttgttcaaaaacgtTTCTGACTGTAATGGTTTTGTGTGGCAGTTTTCATCACAAGCACTTTATTCATTACACCACCATGCTGAGGTGTCACATGCTATTGAGGGGaagaataatatattatttcaaagaaatcaCATTCTAAAAGgttaaaccaataaaaaaaaaatattttcagta

Function

GO:

id name namespace
GO:0001207 histone displacement biological_process
GO:0030154 cell differentiation biological_process
GO:0007283 spermatogenesis biological_process
GO:0051039 positive regulation of transcription involved in meiotic cell cycle biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007141 male meiosis I biological_process
GO:0005634 nucleus cellular_component
GO:0070577 lysine-acetylated histone binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65676 lncRNA downstream 69937 10948752 ~ 10985098 (-) False gng12b
TU65672 lncRNA downstream 150738 10694602 ~ 10904297 (-) True G44353
TU65673 lncRNA downstream 152928 10900802 ~ 10902107 (-) False G44353
TU65668 lncRNA downstream 159683 10687060 ~ 10895352 (-) True G44350
TU65655 lncRNA downstream 401665 10646133 ~ 10653370 (-) True G44341
TU65786 lncRNA upstream 162993 11232451 ~ 11232784 (-) True G44447
TU65788 lncRNA upstream 165032 11234490 ~ 11234694 (-) True G44449
TU65789 lncRNA upstream 165417 11234875 ~ 11235096 (-) True G44450
TU65791 lncRNA upstream 168504 11237962 ~ 11238198 (-) True G44452
TU65796 lncRNA upstream 169661 11239119 ~ 11239464 (-) True G44457
XM_043241427.1 mRNA downstream 188 11042046 ~ 11054847 (-) False ephx4
XM_043241426.1 mRNA downstream 192 11042046 ~ 11054843 (-) True ephx4
XM_043241877.1 mRNA downstream 14006 11016892 ~ 11041029 (-) True btbd8
XM_043241286.1 mRNA downstream 41691 11010998 ~ 11013344 (-) True si:ch73-389b16.1
XM_043242415.1 mRNA downstream 49611 10996397 ~ 11005424 (-) True scinla
XM_043241285.1 mRNA upstream 340604 11410062 ~ 11414618 (-) True znf326
XM_043242461.1 mRNA upstream 345810 11415268 ~ 11424793 (-) False lrrc8db
XM_043242463.1 mRNA upstream 345810 11415268 ~ 11424793 (-) True lrrc8db
XM_043242464.1 mRNA upstream 345810 11415268 ~ 11424477 (-) False lrrc8db
XM_043240951.1 mRNA upstream 359416 11428874 ~ 11437103 (-) True lrrc8c
TU65678 other downstream 338294 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 909888 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1027400 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1782730 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1784113 9269188 ~ 9270922 (-) True G43899
unassigned_transcript_1087 other upstream 903022 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 903251 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1901625 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 1902020 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 2351189 13420647 ~ 13420718 (-) True trnaa-cgc

Expression Profile