RNA id: XM_043242303.1


Basic Information

Item Value
RNA id XM_043242303.1
length 1398
RNA type mRNA
GC content 0.47
exon number 4
gene id im:7152348
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12967100 ~ 12970628 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCATGACTCGACAGCGACTTTAAAACAGCAGGCGGTTATTCACGCTGACAGCAGAGCCAGTTTACTCTCATTCACACACCCATAGTTCATCTCCTGACAAAGATCTGTAGGAGTCCATACAGAGGGAACTGGATTCATTCTACTATAACGCCAAACAGCTTCCAGGAGACTACAACCGCATCCGATCTAACGTCGGTTTGTGTTTTCGGCCATGGTGCTGTTGGAGGATCAGGAATGTGGGGTCTGTTACCTGCATTACTCCCGCATCGACCGCGTTCCCAGATCTCTCCACTGCAACCACACGTTCTGCACTCCCTGTCTGGAGACAATGGGGCTGCTCTACAGCGGCCTGCGCACCATTCGCTGCCCCCTCTGTCGCCAGGTGACTTGTGTAGACCGAGGGCTCAGCTTGCAGGAGGCTCTTTTTGTCGACAGCCAACTGTGGGACAACATTTGTGATGAGCAGCAGCAggaagagaacgagagagagctGGAAGAAGAGGGGAAAAACACTAAGATGCAGGTGCTGCCCTCACCACAGGCTGAATGTCCCGTGCCAAAACACTACAGACCCAAATTCAGACTCCCGACTTTCCTGAAGAGAATGAGCTTTTCCAGGTACCCCGAAGAGAGGATCGTTCCCACCTGCAATGTACAAATGATGTCATGGCGAAGGCTTTCATCGGAAGAGATTTTTTGAAAAGCGCAACAGACGCCATGACAACATTAACACTCGAAGCTGTGCACTTGTCGTATGTTCTGCTGCTGTCATTAAAAGCGTGTGCCGTGTAGTAATCACGCCTGGCGTACTGAAAAAGCAGGAGCAACAGTCGGTCCTGGACAAGGTTTTTAAACAAACCCAATCTTCTCCATGCGCTCCCGTGACTGCATTTTCCATTTGAATAGCCTAGCCAGACGTCTAAATCTCGCTCCTCCATCTGAGGGGAACGTCTCATTAGATATTCCACCCTTAATCCGTCCCAGCTGCTGAGGCTGGATTTGTTTCAGCTGtcccgagagagagagagagagagagagagagggtccCAGATGCGAGGCAGGACTTTCTAAGCAGATGGCATCTCCCCAGGAAACATCACCATCCGTGTCTCAGATAGACGCTTTTAAGTTATTACgagttttgttatttatataatttatgaatgattgtaaattaaaaattctgaTGGCTAAATGTTGCTGGGTTCTTCTCAGAAGGCACACCTTGACCTGTTTCACATGGCTGTCTAGAGCAGGGTGCTTCAAATGTTCTGAAACCAAGGACACCAAATAAGACACATGTCCCTCTTATGCCcctcttttgtttaaaataaagagtaatttctgagataaatgtaattataaaattaataaaaatgtttcctaAGAGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66280 lncRNA downstream 1587 12595846 ~ 12965513 (-) False G44737
TU66282 lncRNA downstream 1587 12629555 ~ 12965513 (-) False G44737
TU66281 lncRNA downstream 1587 12963383 ~ 12965513 (-) True G44737
TU66284 lncRNA downstream 1587 12963383 ~ 12965513 (-) False G44737
TU66270 lncRNA downstream 69382 12525756 ~ 12897718 (-) False LOC122347614
TU66346 lncRNA upstream 14184 12984812 ~ 12985135 (-) True G44784
TU66349 lncRNA upstream 18477 12989105 ~ 12989307 (-) True G44787
TU66360 lncRNA upstream 54479 13025107 ~ 13026209 (-) True G44798
TU66420 lncRNA upstream 243414 13214042 ~ 13243275 (-) False LOC122346940
XR_006251183.1 lncRNA upstream 243429 13214057 ~ 13243671 (-) True LOC122346940
XM_043243024.1 mRNA downstream 267553 12630812 ~ 12699547 (-) False LOC122347614
XM_043241195.1 mRNA downstream 702387 12262919 ~ 12264713 (-) True LOC122346505
XM_043241350.1 mRNA downstream 872360 12088224 ~ 12094740 (-) True zgc:103559
XM_043241354.1 mRNA downstream 879507 12084281 ~ 12087593 (-) True agxta
XM_043241357.1 mRNA downstream 883560 12081977 ~ 12083540 (-) True dtymk
XM_043241667.1 mRNA upstream 115472 13086100 ~ 13109224 (-) False bcl6aa
XM_043241666.1 mRNA upstream 115472 13086100 ~ 13096482 (-) False bcl6aa
XM_043241669.1 mRNA upstream 115472 13086100 ~ 13093536 (-) False bcl6aa
XM_043241668.1 mRNA upstream 115472 13086100 ~ 13093536 (-) False bcl6aa
XM_043241670.1 mRNA upstream 115472 13086100 ~ 13093348 (-) True bcl6aa
unassigned_transcript_1088 other downstream 994320 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 994549 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251151.1 other downstream 1897642 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 1897643 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 2250359 10710045 ~ 10716741 (-) True G44358
unassigned_transcript_1090 other upstream 455 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 850 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 450019 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 450201 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 450692 13421320 ~ 13421391 (-) True trnaa-ugc_1

Expression Profile