RNA id: XM_043242424.1


Basic Information

Item Value
RNA id XM_043242424.1
length 4931
RNA type mRNA
GC content 0.43
exon number 21
gene id lepr
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14414809 ~ 14450272 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGATGGGATCTACAAATTCACTGGAACAAAACTAAGCTGTcttatttttcacaaacattGACTGATGGTTTCTCACTTTTCAAGAGCACCGGCCACTACACAAACTACGCAGGAAGAAGAGCTAAACTCTGGATCTGGAGCCCCTTAGGCGAAGCGGGACACTTGCAGTGAGACTTTGCGACGGTAGTTGGATCAAATTCACGGACAAGCAGAGCGCGATCACCTCAGAGGCCGTTCCTCTCTTACACTCCATCATTCCATCAAGGAGAGAAATGATGCTCACAATCATATGAAATGATGTCTCTGTTTATCGTGCTTGCTCTTCTTGTGAATTTCATTACCATTTCACAAGGTCTTGCTTTGAGTCCTTCTGATGGCACTGGAGGTGTTTATGAAGACCTGAAGTGGAAGGCTCTGCTGTGTTGTGAGCTGCCCCTTGCTCAGACACTTGTCGAAGGTCTTTCAGAACACCCTCCTGTAGGAAAGTGTCGGCTACTAAATGCTACAAACCCAGAATTCTCAAGAAACTGTTTGGACATCCTGTGCTGGCTTGAAGGTGAATGGACAAATCTGATTTGTAATGCGAAGAGCCACAGAGCAGCAGCCGCTGCTAGTCTACTCACCGTTAGACCTCAATTAGTtgtaCAGATGAATGTGCTTTCAGATGAAGCAAACCACGCTGCTCAGTGTGCCGGGGAAGATACTACAATGTGCTCTATTTCACTTCATGGCGATGATGCAACAGTCTCATTGAACATCAGTATATCTTTAAATGGGAGTACTGCACTGTCACCCAAGATGCAAGTCAGCACACATCATCTGCGAAGACCAGAGCCACCTGTCAATCTGCATTACGATGTGACGACTGAAGGGGAAGTAATATTCAGATGGAGTGATGCACGACCTAAAAGTGATGCCATTAACTATGAGATCCGATACTCATCTAATTCTTCACTTCAACAGTGGGAGGTGGTGAAGGTCAAAGGTCGTTCCTGGGTCTCTCCGAATGAGCTCAGTTCTGGGATCAGACACACAATCCAAGTGCGCTACCAAAGCCAGTTGAACTACTGGAGTGAATGGAGCCAACCTTTCTATTTCACACTCGATGTCAGTTACATCCCTGCCGAAATCTTCACAAGACCAGGGTCAGAGGTAACGGTTTATGCCGTCTTCCACAACCGCAGCTGGAGTGCTAGTAAAGCTGTGTGGATGCTTAACGGGCAGGTGAAGATTCCAGAAAGCCAGTACACGGTAATCAACGAGCAGGTTAGCGCAGTCACTGTGACGCTAGATGAACCAGGGTTTGACACTTTGATGTGCTGCCACCAGTGGGGAGAAAGGTTCAAGTGCATCATCGCCTATGCCAAGATATACACCGAAGGGATGTTTAATGCAGATATCACCTGCCAGAGCAAGAATTCAGAGGTGGACACCATGAGCTGTGAGTGGAATAAGAGCGCTTGGGCACAAGTCCGACTACTTTACAGACAATATACATCAATGTGTGAGACTGTATCAGGGATGGAGGGCAGTGAAGAAGCTGAGGAAAACATGGAGTGCTCATCTGGAGCAGGAGACCACAGAGAGTGCACTTTAAGAAACCTTAGTTTGTTCTCCTGCTACAAAATCTGGTTGGAAGTGGAAGGAGGGCACGGCAAAGTGAGATCATTTCCTGTCTATGTTGCGCCTATTGACTATGtaaaacCATCTCCTCCCTCAGTCCTGGAAGCAACCACCTTGCCGAATAAAACCTTGAGTGTAAGCTGGAGACGTCCTCATTTACCAGTATATGACATGCAGTACGAGCTGCGCTTTGTGGCTTTGCGTGGGATGGCAAATACACAGTGGAAGGTCATCGGTCCACTTCTGGAAACACAGGCAGAGATCCGGCTTGAAGAGTCCTGTGTTCAGTTTAAAATAGAAGTTCGCTGTAGAAGACTGAATGGCTCTGGATACTGGAGTGACTGGAGCATGAGTTACACTTCAGCTGTTTACAACAGCAAAGCACCAGAGATGGGGCCAGACTTCTGGCGCGTTATACAAGAGGATCCTGTTAGGAGTGTGACAAATGTCACACTTATTATTAAGCAGCCTGTCCAAGCTGGAGATTCGTCTAGTTGTGTGGAGGGTCTTGTGATCGAACACCAAGCTTCAGGCAGAGCTGTGTGGTCAAATGAAACAGCGCCGGCTCAGTTTCACTCATTCCAGTGGAGGAAGGAAGCGCACACAGTCACCGTAATGTCTCGCAATGCTTTGGGCATCTCTACACGGAATCGAAACATGACGTTGTTGCATCAACCCAAACGACGATGTGTACGCTCTTTCAGCGCAGTTGCAAATTCTAGTTGTGTGCATCTTTCCTGGAGCCTGTTATCTGATCATCCAGTGCCTCAGTCGTTTGTCATCGAATGGCAAGACCTGAAAAAAGACCCTGAACAGGACGTGTCTTTGACTGAGAGGCTGCAGTGGGTCAGAGTTCAGTCTGCATCAAGAGATCTCTCCCTTTGCCGTCGTTTTTATGGCTCAGAGGAGTTCACCTTGTATCCAGTGTTTGTGGATGGTGAAGGGGAGCCGGTGCGATACACTGCTACTAGGGGCGACCCTGCAGCATACATACTCCTACTGATCATTGCGTTCCTGTCAGTGGTGCTGTTTGTCACTCTTCTGATGTCACAAAACCAGATGAGAAAACTCATGTGGAAGGATGTTCCAAACCCTAACAATTGTTCCTGGGCCAGAGGAACGGACTTCAGGCAGATTGACACCATAGAGCACCTGTTCCCTCACTCAGAGGGTCTCACTGCCTGTCCACTGCTGCTGGTCTCTGAGAGCATCTGTGAGGTGGAAATCATCGAGAAAACTCATCCTGTCACGCTTGAACATGAAAAAGACAATGAAGTACCCAATTATAAATCTGGAGACAAAACGACAAAGCAATCTACCCTTTCAGCAGACTCCTCTGAACCTCTGTCTCTGGAGGCCTCCACCGCTGCTGCTACTCCAGAAACATCGGGCCAGTCCTCAGTGACATACTCGACCGTTCTCCTTTCCGATCAGCCCAGTCTCCTTCGAAAGCAGCAGGAGAGTCTGAGCAGCTCCAGTGACGAAGGCAACTTCTCTGCCAACAACTCAGATATTTCTGGCTCCTTCCCTGGAGGACTCTGGGACCTGGAGAACCATGTGTGCTCCGACAGCGCCAATCCCCGCCATTCCAGCTCCTATAACTCCGTGGAAGAGTTTTCGGAAACATCAGATCAAGATTATGAAGCATCAGAAAGCACAGGTGTAGCCAAAGACCTCTACTACCTTGAGGTGAacgaagaggaggaagaagatgaagaggagATTGAGGAAACACAGGGTGAACaggaaaagaatgaaaaagttATGAAGGTGGATGCCAGGCCTCTTCTAGAAGGCAAAGGTTCCACATCTTTTGATTCCAATAGCGCATCTCACAGCATTCCTCTTTATCTTCCTCAGTTTCGGACTGAATGCATTAATCCACCctgaaataataacaacagcacCACTTGGTGGTAATCTGggataatgtttttctttattggaTGGAGGTCCACAAAATGCCTCTGTGGTTTTCCACTAGGGTTGCACaatttaagaattaaattttaaattttatttttatttttatttttttctgaaaacagcCAAGGCTGCATgatctttggaaaaaaaaatctaattgcaATTTTAACCCCTTGTGATTTAAAGtatcacaaattatttttagctCCAGGTTTTCTGTGCTTGTAGGGCTGCAGTATTTGGCCAAAAATGTGATTATGTATCGATATGactatattataattaatattattaacatttttattattattattgattaaatattacagtaaaatacagaatggtttattttcaaagaaatactatcataatttagtttaaggtcacaactgtaaaattacagtactAACATTTATGGCTGTcttaatttctttaaacaatCAGCTGCAGAGAAAACTGCAGATAGCCTTTAAAGCTTCTTATTCATTGACAACAGGAAGCTTCTCATTACAAGTTTGTGAAGATGGTTGATGCATGTTGCATTTTTACACAGTGCACATTATCAGATTGCAGATATAGGTTTATGTgtagtaacatttatttggaaCCAACATGTTGATAAAAGCCATTTTACTATTTAGTTTTTGGTtaaattaattgtgcagccctgtGTTCACCTTCAaccttcataaaaaaaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataattaacagcCAGATTTCCCTGGCCCATTTGATAAGGGCATCCAAGCACAGTTTAAACTCTGAACGTCTCAGTGATAGGTTGATGATCGGCCTGTCGTTGCTGAAACTCGCTGCTTTCCATCTTCATCGCATGGAAACATTCGAAGACTGAACTAATATCTTGTAACGATCACACTAATTGGAAAGAAGCAAGAAAGAGTCTGAGGATGTGGTGGTGGTCAGTCACGGTTTAGTGgctttttgtgcatttcaggTGCTCCATGAAGTCCAGGTTCTCATAAGTGAAGCGGCTTTTGAAGAGGCGTCCATCAAAATATCAGCTTTTTGACGAAATAGCCTCTCATGTCTGCATTTACATTGGGCTAATTCATTcaatatgaatgtatattttgtcaGTGAGGTCTGTGTTCTTTGGAAACTCAAATATTTTGAGTgtacaaaatgtcatttattttcagtgtatggtatttttgatgaaatgagGGTTGAATGTAATTCAGTGAATAAAACTGGTTATATATGTCAGACTAGCAGTAAGAATGTGTGTACAGTATACACGTATTTCTTGTCTATTTTTCTGgtcaaaataaactatttattgcAGTTA

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0048839 inner ear development biological_process
GO:0007399 nervous system development biological_process

KEGG:

id description
K05062 LEPR, CD295; leptin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251154.1 lncRNA downstream 135780 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA downstream 135780 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA downstream 135783 14263867 ~ 14279026 (-) False LOC122346673
TU67012 lncRNA downstream 135783 14263867 ~ 14279026 (-) False LOC122346673
TU67013 lncRNA downstream 135783 14263867 ~ 14279026 (-) False LOC122346673
TU67022 lncRNA upstream 42849 14493121 ~ 14494022 (-) True G45277
XR_006251130.1 lncRNA upstream 201444 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA upstream 201444 14651716 ~ 14656031 (-) True LOC122346442
TU67118 lncRNA upstream 455230 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 652418 15102690 ~ 15154616 (-) True G45532
XM_043241459.1 mRNA downstream 11849 14285497 ~ 14402960 (-) True pde4ba
XM_043241460.1 mRNA downstream 51424 14285497 ~ 14363385 (-) False pde4ba
XM_043241461.1 mRNA downstream 79160 14285497 ~ 14335649 (-) False pde4ba
XM_043241462.1 mRNA downstream 86608 14285497 ~ 14328201 (-) False pde4ba
XM_043241464.1 mRNA downstream 122638 14285497 ~ 14292171 (-) False pde4ba
XM_043241211.1 mRNA upstream 8717 14458989 ~ 14485480 (-) True dnajc6
XM_043241210.1 mRNA upstream 8717 14458989 ~ 14480666 (-) False dnajc6
XM_043241208.1 mRNA upstream 8717 14458989 ~ 14480666 (-) False dnajc6
XM_043241209.1 mRNA upstream 8717 14458989 ~ 14480664 (-) False dnajc6
XM_043241213.1 mRNA upstream 8717 14458989 ~ 14480419 (-) False dnajc6
TU66983 other downstream 221643 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 733535 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 946870 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 947244 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 947583 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 878695 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1153638 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1608696 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1609621 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1910928 16361200 ~ 16364020 (-) False fam183a

Expression Profile