RNA id: XM_043242542.1


Basic Information

Item Value
RNA id XM_043242542.1
length 1355
RNA type mRNA
GC content 0.46
exon number 10
gene id phb2b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13820119 ~ 13823792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAGTACTACATTACCCACAATTCCTTCCGGTTTAAGCGGAAGTTGTTTGTGACGACCTTGGGTAGCTCTTGCAAGCATGGCGAATAAAGAGCCTAACAGGTTGCTCCAGAACCTAAAGGACCTCGCCGGACGTATGTCCTCTGGATCAAAGGGTGCCGGACTTGGCCTGAAGTTATTAATTGGAGCAGGTGCGCTTGCTTATGGAGTCAAAGAGGCCACCTATACAGTGGAGGGTGGTCAGCGTGCCATTATCTTTAGTAGAATTGGAGGGATGCAAATGGACACAGTCCTCTCTGAGGGTCTCCACTTCAGgATACCATGGTTTCAATATCCAATTATATATGATATCAGAGCCAGGCCAAGAAAAATATCATCTTTAACAGGAAGCAAAGACCTGCAGATGGTGAACATTGCATTGCGTGTGCTGTCACGACCTGTGGCCTCCAACCTTCCTGTCATGTACCAGCAGCTGGGGAAGGACTACGACGAGCGCGTGCTGCCGTCCATTGTAAATGAAGTTCTGAAGAGCGTGGTCGCCAAATTCAACGCATCCCAACTAATTACACAAAGAGCCCAAGTCTCTCTGCTCATCCGACGGGAGCTCTTCGAACGCGCTAAGGACTTCAACATTATTCTCGATGACGTGGCCATCACGGAGTTGAGCTTCAGCAAGGAGTACACAGCGGCTGTGGAGGCCAAACAAGTCGCCCAGCAGGAGGCGCAAAGAGCTCAGTTCTTTGTGGAGAAAGCCAAACAAGAACAGAAGCAGAAGATCATCCAAGCTGAAGGAGAGGCTCAGGCAGCCAAAATGTTAGGGGAGGCCGTCACAAAGAACCCTGGATACCTCAAACTAAGAAGAATCAGAGCAGCGCAGAACATCGCCAAAACGGTGGCGGCTTCACAGAACAAGGTTTACCTGAACGCAGATAGTTTGGTTCTGAATCTACAGGATGACTCTTTTAACAAATTGTCTCTCGGAAAGAAGTAACCCATTCAGAAGCCGATCTCATTCCAGTTGTCAGAGGTTATATTACGAGTAACCGTATATGTGTCCTTTGAGATGGCATTTTAAGATTGAGTCACAAATGAATATGTCCGTCTGGGGAAGACTCATTCAATTTCTAATGGTGTAGTCCTGGTTCGTCGATCAAATTTGACTCCACAGTTTGCTGGTTATCAAATACAGCTTTGTGTTTATCTTCAGCCCAATGAATGAAGGAAACGGTGTACTGTACCAGACCATGTAATGCTTTTCGACGGTGATTGTCATAACAGGAAACATGTCTTTAAATCATACATTAGATGAGCTCAAGGTTGgttgagaaaaaataaatccatccaTTTTCCTAGGAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17081 PHB2; prohibitin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66600 lncRNA upstream 158022 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 162353 13656192 ~ 13657766 (+) True LOC122346715
TU66598 lncRNA upstream 169236 13650115 ~ 13650883 (+) True G44997
TU66580 lncRNA upstream 225518 13589986 ~ 13594601 (+) False LOC122346508
XR_006251135.1 lncRNA upstream 225582 13589885 ~ 13594537 (+) True LOC122346508
TU66675 lncRNA downstream 12815 13836607 ~ 13836819 (+) True G45056
TU66694 lncRNA downstream 36463 13860255 ~ 13860609 (+) True G45070
TU66717 lncRNA downstream 168953 13992745 ~ 13996966 (+) True G45075
TU66727 lncRNA downstream 192643 14016435 ~ 14128344 (+) True G45084
XR_006251242.1 lncRNA downstream 305555 14129347 ~ 14131078 (+) True LOC122347615
XM_043242544.1 mRNA upstream 200 13813916 ~ 13819919 (+) True pde6d
XM_043241818.1 mRNA upstream 97685 13697792 ~ 13722434 (+) True usp13
XM_043241819.1 mRNA upstream 97685 13697792 ~ 13722434 (+) False usp13
XM_043241821.1 mRNA upstream 97685 13697792 ~ 13722434 (+) False usp13
XM_043241822.1 mRNA upstream 97685 13697792 ~ 13722434 (+) False usp13
XM_043242643.1 mRNA downstream 30450 13854242 ~ 13857900 (+) True ptmaa
XM_043242793.1 mRNA downstream 44085 13867877 ~ 13971903 (+) True dlg1a
XM_043242794.1 mRNA downstream 44085 13867877 ~ 13971903 (+) False dlg1a
XM_043242804.1 mRNA downstream 44085 13867877 ~ 13971903 (+) False dlg1a
XM_043242797.1 mRNA downstream 44085 13867877 ~ 13971903 (+) False dlg1a
TU66465 other upstream 410207 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 710753 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 738000 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 1039199 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1727664 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 148381 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 257141 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1412419 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1535069 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1741189 15564981 ~ 15566668 (+) True G45448

Expression Profile