RNA id: XM_043242735.1


Basic Information

Item Value
RNA id XM_043242735.1
length 1709
RNA type mRNA
GC content 0.47
exon number 6
gene id lmo4b
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11695648 ~ 11708480 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actGACACATGTAGAGCACAAGCGACAGGCAGCGGCGAGACACCAGCTCGGAGGACGGTTACAAACTGAGGCTCTCGCTACATCTATGGAAATTACGGAAGACGTTCCCGAACGCTCGTTTGACAAAACCGCAGCCGATCTTTCCAGTGATAGCCAGAACATCTGAAAAGgaatGATAGTAATTTCGTATAGCGAGAGGGAGACGGATTTGTGACGGGTGGACGCAAATAATGTCCTGGATTAGCGAAATACACAATGGTGAACCCTGGAGGAAGTGCCCAGCCCCCACCTGTCGGAGCGGGATCTCTGTCGTGGAAGCGCTGCGCGGGATGTGGGGGAAAGATCGCAGACCGTTTTCTCCTGTATGCCATGGACAGCTATTGGCACAGCCGCTGTCTGAAATGTTCCTGCTGCCAGGCCCAGCTCGGAGAGATCGGCACATCCTGCTACACCAAGAGCGGCATGATCCTGTGTAGAAATGACTACATCAGGTTATTCGGCAACAGTGGGGCGTGCAGTGCGTGTGGTCAGTCCATCCCAGCCAGTGAACTGGTTATGAGGGCACAGGGAAACGTGTACCATCTCAAGTGTTTCACATGTTCTACCTGCCGGAACCGGCTGGTCCCTGGTGACCGGTTTCACTACATCAACGGCAGCTTGTTCTGCGAACACGACAGACCCACAGCACTCATCAACGGCCATTTGAGTTCACTGCAGACTAACCCTCTACTGCCTGACCAGAAAGTGTGTTAGGATGCCGGTGTTGCTCAAAGCAGGATGTGTGCCTTCATTTCAGCCCCTCGCTCATTGTCACAGAAGACCTTTTCGGATCGGACCCCATCCCACTCCTTTTTCTCGCCGATCTCAGGCTCGAGCTCCACCTTGGCCTGCACCAGCCAGAGCCCACCCCACCCCAcccctctctctcccacacacccTTTCCCGCTCCTTTACTCCTAACTCCTGAATCATGGATGGAAAATACCCATGAGGCCCTGGAGGGGGAATACTGAGGACTCTATGAACTGACCCAGGCGAGACCTCTGATCCTGAGGGACTCAAAGACTGACACAGAAAGAGACCGGCTGGAGGACGTTgttttttgggttaaaaaaaaaaaagagagagagacagaaagggtgaaattaaaatgacaaatgaagcTGATCCACTGCAGCGATTTTTTTTGAATCTGCTTTCATAACACTCGTTTGAAAATGTAGTGGGGGAATactgactttcttttttcctttatatTTTTGTCCTACCTTGTCTATTCTCCTTTTCTTCACAACATGGTATCTTCTCTTTCTATATTTTAGATGTTGTAAAGGGAATGTGTTTCATTTCGGATGATATAAAAATCCTGAAGACTGGGTTCGAAGAAGTATCCGTGgcttttttgtggaaatcaaaTCATGAACACTCTTGGTGTATTTGTAAAACTaccatgtacagtatgtatgcatgtaaatgtttttgtcccATTGTGGCTACCGTACATACTACACACAGCAGCTAACCCCGTTCCCTTTCCCCTCCAACCCCGAAATCacgcaacaaacaaaaaatgaagcTCATAGCTGTCAACCTATAAATGCAGAATGAGAGAGAATTCtatttgtgatattttcagAGACATTTGCTCCAATATggtgtatttaattaataaaaaaatgagattaaaaacaTCCCTTTTTTTAATCCTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 266885 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 453142 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 453616 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 456184 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 457450 11237962 ~ 11238198 (-) True G44452
TU66210 lncRNA upstream 441354 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 441354 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 441354 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 441354 12149834 ~ 12437749 (-) False G44705
TU66217 lncRNA upstream 441354 12149834 ~ 12217207 (-) False G44705
XM_043241801.1 mRNA downstream 214455 11449837 ~ 11481193 (-) False pkn2b
XM_043241800.1 mRNA downstream 214455 11449837 ~ 11481193 (-) True pkn2b
XM_043240951.1 mRNA downstream 258545 11428874 ~ 11437103 (-) True lrrc8c
XM_043242463.1 mRNA downstream 270855 11415268 ~ 11424793 (-) True lrrc8db
XM_043242737.1 mRNA upstream 26336 11734816 ~ 11786162 (-) True hs2st1b
XM_043241126.1 mRNA upstream 141778 11850258 ~ 11851231 (-) True sox14
XM_043241418.1 mRNA upstream 264985 11973465 ~ 11998495 (-) True hdlbpa
XM_043241419.1 mRNA upstream 264985 11973465 ~ 11997910 (-) False hdlbpa
XM_043242753.1 mRNA upstream 347412 12055892 ~ 12062418 (-) False stk25a
XR_006251151.1 other downstream 626190 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 626191 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 978907 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 1550501 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1668013 10025578 ~ 10027635 (-) False c6h17orf67
unassigned_transcript_1087 other upstream 264000 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 264229 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1262603 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 1262998 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1712167 13420647 ~ 13420718 (-) True trnaa-cgc

Expression Profile